Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000906

Physical Location & Seq

Genomic Coordinates Forward (+)

27404154 .. 27406251

Gene Structure 2098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0249900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTTCGAGAGTCGTTGATCAACAACAAGCCAGAGCCTTTTTACGAAATGGTTGGCTGCTTTACCTCACAGCAATATCGTATTCTTCCTTACAGAGAATTCATCCGGGTCTGTGGGATTTTTGTGGTTGCATTTTGCAAAAGACAATGATGGGTAGGATGATATTGAATAATGCATTGAGAGCAATAGTGAATGTAGAGAAAAGGCAGAAAGCTACGGTGGAGTTGCAACCTATCTCCACAGTCATGTCATCTTTTCTCAAAATTATGAAAAATCGAGGATATATTAAGGATTTTGAAGTTTTTGAGCCACATAGAGTGGGGAAAATTACAGTTCAACTACAAGGCAGGGTTTATGATTGTCGAGCTCTTACTTACAGGCAAGACGTCAAGGCAAGAGATATTGAAGAGTATAAAAAGCGTAAGCTTCCAACGCACCAGCTAGTTCTCAACTCATTGGCACATATTTTTGCAAGGTTCATTGACAGCTACACCAAGGACTGGAAACTCAAGTTACAAAAGACTTCAATCTTGTTCTTTTCTTTTGCTGTTGTATATGGAGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

189

Amino Acids

22.1

Weight (kDa)

9.97

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	56 - 141	2.9e-09	Ribosomal protein S8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT3G09620 AT3G09620
fragaria_vesca	FvH4_3g27090 FvH4_4g11730 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270
malus_domestica	MD06G1002800.v1.1 MD09G1086200.v1.1
prunus_persica	Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1
pyrus_communis	pycom06g00290 pycom09g01160
rosa_chinensis	RchiOBHm_Chr5g0049651 RchiOBHm_Chr7g0217001
rosa_laevigata	RLG00000002515 RLG00000034630
rosa_multiflora	Rmu_co8441089.1_g000001 Rmu_sc0001725.1_g000004 Rmu_sc0002114.1_g000002 Rmu_sc0013777.1_g000004 Rmu_sc0013777.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032010 Rroxscaffold_3G00242640
rosa_rugosa	Rorug05G0249600 Rorug05G0249700 Rorug05G0249800 Rorug05G0249900 Rorug05G0250000 Rorug05G0250100 Rorug05G0250200 Rorug07G0164800 Rorug07G0164900 Rorug07G0165000 Rorug07G0165100 Rorug07G0165200 Rorug07G0165300 Rorug07G0165400.1 Rorug07G0165500.1 Rorug07G0165600
rosa_samantha	Rh5AG326000 Rh5BG337300 Rh5CG362000 Rh5DG349500 Rh7AG305000 Rh7BG296500 Rh7CG324100 Rh7DG305100
rosa_wichuraiana	Rw5G030810 Rw7G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
AccB7I	CCANNNNNTGG	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	501
AgsI	TTSAA	5 cut(s)	169, 299, 338, 407, 528
AluBI	AGCT	5 cut(s)	215, 368, 427, 442, 489
AluI	AGCT	5 cut(s)	215, 368, 427, 442, 489
Alw21I	GWGCWC	1 cut(s)	370
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	108
BfaI	CTAG	1 cut(s)	443
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse1I	ACTGG	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	2 cut(s)	103, 165
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	506
BseXI	GCAGC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	506
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	1 cut(s)	19
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	3 cut(s)	220, 244, 334
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	387
BstF5I	GGATG	2 cut(s)	103, 165
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 433
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	103, 165
CviAII	CATG	1 cut(s)	247
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	368
EcoRI	GAATTC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	1 cut(s)	250
FaiI	YATR	9 cut(s)	248, 269, 285, 315, 357, 414, 465, 556, 558
FatI	CATG	1 cut(s)	246
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	90, 172
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	1 cut(s)	59
HapII	CCGG	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	107
Hpy188III	TCNNGA	1 cut(s)	9
HpyCH4III	ACNGT	3 cut(s)	220, 244, 334
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	5 cut(s)	132, 139, 176, 229, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 433
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	6 cut(s)	46, 120, 334, 364, 452, 487
Lsp1109I	GCAGC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	2 cut(s)	78, 419
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	3 cut(s)	99, 264, 327
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	2 cut(s)	77, 272
Mph1103I	ATGCAT	1 cut(s)	178
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	182, 433
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	501
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp124BI	GAGCTC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	9 cut(s)	69, 217, 235, 370, 390, 429, 444, 479, 491
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	3 cut(s)	99, 264, 327
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	3 cut(s)	220, 244, 334
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	3 cut(s)	8, 277, 364
TasI	AATT	3 cut(s)	99, 264, 327
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	92, 284, 469
Van91I	CCANNNNNTGG	1 cut(s)	501
XapI	RAATTY	1 cut(s)	99
XspI	CTAG	1 cut(s)	443
ZraI	GACGTC	1 cut(s)	388
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.