DEAD-box ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 257 - 473 | 4.4e-08 | Endonuclease/Exonuclease/phosphatase family |
| RVT_1 | PF00078 | 751 - 951 | 2.3e-28 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| zf-RVT | PF13966 | 1235 - 1318 | 2.9e-19 | zinc-binding in reverse transcriptase |
| RVT_3 | PF13456 | 1445 - 1519 | 2.6e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2399 |
| Acc36I | ACCTGC | 2 cut(s) | 2614, 3212 |
| AccB1I | GGYRCC | 1 cut(s) | 3771 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 966, 2526 |
| AccBSI | CCGCTC | 1 cut(s) | 2409 |
| AccI | GTMKAC | 3 cut(s) | 1099, 3019, 3211 |
| AccII | CGCG | 4 cut(s) | 2572, 3109, 3415, 4466 |
| AccIII | TCCGGA | 1 cut(s) | 2970 |
| AclI | AACGTT | 2 cut(s) | 3280, 4045 |
| AclWI | GGATC | 8 cut(s) | 11, 130, 1941, 2466, 3058, 3557, 3576, 3921 |
| AcoI | YGGCCR | 3 cut(s) | 190, 3104, 3410 |
| AcsI | RAATTY | 5 cut(s) | 1873, 2308, 3145, 3722, 4651 |
| AcuI | CTGAAG | 3 cut(s) | 29, 3243, 4416 |
| AcyI | GRCGYC | 3 cut(s) | 2950, 3317, 3453 |
| AflIII | ACRYGT | 3 cut(s) | 269, 1251, 1830 |
| AgeI | ACCGGT | 2 cut(s) | 361, 1991 |
| AjiI | CACGTC | 1 cut(s) | 1833 |
| AjnI | CCWGG | 9 cut(s) | 384, 1442, 1501, 1658, 2673, 2889, 2944, 3391, 4490 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 300, 332, 3624, 3656 |
| AleI | CACNNNNGTG | 2 cut(s) | 398, 1231 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 114, 146, 656, 688, 3905, 3937 |
| Alw21I | GWGCWC | 5 cut(s) | 543, 1195, 1591, 2113, 4279 |
| Alw26I | GTCTC | 9 cut(s) | 280, 691, 1057, 1298, 2380, 2838, 3324, 3899, 4573 |
| AlwI | GGATC | 8 cut(s) | 11, 130, 1941, 2466, 3058, 3557, 3576, 3921 |
| Ama87I | CYCGRG | 2 cut(s) | 783, 2233 |
| Aor13HI | TCCGGA | 1 cut(s) | 2970 |
| ApaI | GGGCCC | 1 cut(s) | 817 |
| ApeKI | GCWGC | 7 cut(s) | 180, 1582, 1810, 2363, 2774, 3035, 3847 |
| ApoI | RAATTY | 5 cut(s) | 1873, 2308, 3145, 3722, 4651 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 59, 91, 3844, 3876 |
| AseI | ATTAAT | 2 cut(s) | 2448, 3050 |
| AsiGI | ACCGGT | 2 cut(s) | 361, 1991 |
| AspA2I | CCTAGG | 1 cut(s) | 647 |
| AspLEI | GCGC | 1 cut(s) | 2779 |
| AsuC2I | CCSGG | 5 cut(s) | 443, 498, 784, 785, 2115 |
| AsuII | TTCGAA | 1 cut(s) | 4521 |
| AsuNHI | GCTAGC | 2 cut(s) | 1535, 2761 |
| AvaI | CYCGRG | 2 cut(s) | 783, 2233 |
| AvaII | GGWCC | 7 cut(s) | 344, 1151, 1392, 1714, 2680, 3163, 3664 |
| AvrII | CCTAGG | 1 cut(s) | 647 |
| AxyI | CCTNAGG | 1 cut(s) | 3691 |
| BaeGI | GKGCMC | 1 cut(s) | 817 |
| BanI | GGYRCC | 1 cut(s) | 3771 |
| BanII | GRGCYC | 2 cut(s) | 817, 3583 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 202, 234 |
| BauI | CACGAG | 1 cut(s) | 252 |
| BbsI | GAAGAC | 2 cut(s) | 1156, 2903 |
| Bbv12I | GWGCWC | 5 cut(s) | 543, 1195, 1591, 2113, 4279 |
| BbvCI | CCTCAGC | 1 cut(s) | 2067 |
| BbvI | GCAGC | 7 cut(s) | 192, 1569, 1797, 2350, 2786, 3047, 3834 |
| BceAI | ACGGC | 2 cut(s) | 1834, 2712 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 169, 203, 3880, 3914, 3956, 3990, 4598, 4632 |
| BciT130I | CCWGG | 9 cut(s) | 386, 1444, 1503, 1660, 2675, 2891, 2946, 3393, 4492 |
| BclI | TGATCA | 2 cut(s) | 1414, 1915 |
| BcnI | CCSGG | 5 cut(s) | 443, 498, 784, 785, 2115 |
| BcoDI | GTCTC | 9 cut(s) | 280, 691, 1057, 1298, 2380, 2838, 3324, 3899, 4573 |
| BfmI | CTRYAG | 4 cut(s) | 225, 1750, 1769, 3926 |
| BfoI | RGCGCY | 1 cut(s) | 2780 |
| BfuAI | ACCTGC | 2 cut(s) | 2614, 3212 |
| BglII | AGATCT | 2 cut(s) | 113, 260 |
| BlnI | CCTAGG | 1 cut(s) | 647 |
| BlpI | GCTNAGC | 3 cut(s) | 324, 591, 2723 |
| BmcAI | AGTACT | 2 cut(s) | 3007, 3816 |
| Bme18I | GGWCC | 7 cut(s) | 344, 1151, 1392, 1714, 2680, 3163, 3664 |
| BmeT110I | CYCGRG | 2 cut(s) | 783, 2233 |
| BmgBI | CACGTC | 1 cut(s) | 1833 |
| BmrI | ACTGGG | 2 cut(s) | 50, 3690 |
| BmtI | GCTAGC | 2 cut(s) | 1539, 2765 |
| BmuI | ACTGGG | 2 cut(s) | 50, 3690 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2174 |
| BpiI | GAAGAC | 2 cut(s) | 1156, 2903 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 530, 562 |
| BpmI | CTGGAG | 3 cut(s) | 1642, 4084, 4493 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1742, 2067, 2382, 4425 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 324, 591, 2723 |
| Bpu14I | TTCGAA | 1 cut(s) | 4521 |
| BpuEI | CTTGAG | 2 cut(s) | 86, 1853 |
| BpuMI | CCSGG | 5 cut(s) | 443, 498, 784, 785, 2115 |
| Bsa29I | ATCGAT | 1 cut(s) | 4449 |
| BsaAI | YACGTR | 2 cut(s) | 833, 1549 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1638 |
| BsaHI | GRCGYC | 3 cut(s) | 2950, 3317, 3453 |
| BsaI | GGTCTC | 1 cut(s) | 1298 |
| BsaWI | WCCGGW | 4 cut(s) | 361, 1991, 2753, 2970 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 533, 563, 4057, 4087 |
| Bse118I | RCCGGY | 4 cut(s) | 361, 679, 1991, 2638 |
| Bse21I | CCTNAGG | 1 cut(s) | 3691 |
| Bse3DI | GCAATG | 5 cut(s) | 351, 426, 1089, 2295, 3454 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1638 |
| BseAI | TCCGGA | 1 cut(s) | 2970 |
| BseBI | CCWGG | 9 cut(s) | 386, 1444, 1503, 1660, 2675, 2891, 2946, 3393, 4492 |
| BseCI | ATCGAT | 1 cut(s) | 4449 |
| BseJI | GATNNNNATC | 1 cut(s) | 1638 |
| BseMI | GCAATG | 5 cut(s) | 351, 426, 1089, 2295, 3454 |
| BseRI | GAGGAG | 6 cut(s) | 298, 466, 469, 535, 538, 2729 |
| BseSI | GKGCMC | 1 cut(s) | 817 |
| BseXI | GCAGC | 7 cut(s) | 192, 1569, 1797, 2350, 2786, 3047, 3834 |
| BseYI | CCCAGC | 2 cut(s) | 1017, 3988 |
| BsgI | GTGCAG | 1 cut(s) | 199 |
| Bsh1236I | CGCG | 4 cut(s) | 2572, 3109, 3415, 4466 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1825 |
| BshNI | GGYRCC | 1 cut(s) | 3771 |
| BshTI | ACCGGT | 2 cut(s) | 361, 1991 |
| BshVI | ATCGAT | 1 cut(s) | 4449 |
| BsiEI | CGRYCG | 1 cut(s) | 1825 |
| BsiHKAI | GWGCWC | 5 cut(s) | 543, 1195, 1591, 2113, 4279 |
| BsiHKCI | CYCGRG | 2 cut(s) | 783, 2233 |
| BslFI | GGGAC | 5 cut(s) | 930, 961, 2693, 3176, 4196 |
| BsmAI | GTCTC | 9 cut(s) | 280, 691, 1057, 1298, 2380, 2838, 3324, 3899, 4573 |
| BsmFI | GGGAC | 5 cut(s) | 930, 961, 2693, 3176, 4196 |
| BsmI | GAATGC | 2 cut(s) | 784, 901 |
| Bso31I | GGTCTC | 1 cut(s) | 1298 |
| BsoBI | CYCGRG | 2 cut(s) | 783, 2233 |
| Bsp119I | TTCGAA | 1 cut(s) | 4521 |
| Bsp120I | GGGCCC | 1 cut(s) | 813 |
| Bsp1286I | GDGCHC | 7 cut(s) | 543, 817, 1195, 1591, 2113, 3583, 4279 |
| Bsp13I | TCCGGA | 1 cut(s) | 2970 |
| Bsp1407I | TGTACA | 4 cut(s) | 451, 3081, 3369, 3430 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 324, 591, 2723 |
| Bsp19I | CCATGG | 3 cut(s) | 2094, 3820, 4319 |
| BspDI | ATCGAT | 1 cut(s) | 4449 |
| BspEI | TCCGGA | 1 cut(s) | 2970 |
| BspFNI | CGCG | 4 cut(s) | 2572, 3109, 3415, 4466 |
| BspHI | TCATGA | 2 cut(s) | 1431, 1912 |
| BspMAI | CTGCAG | 1 cut(s) | 3930 |
| BspMI | ACCTGC | 2 cut(s) | 2614, 3212 |
| BspOI | GCTAGC | 2 cut(s) | 1539, 2765 |
| BspPI | GGATC | 8 cut(s) | 11, 130, 1941, 2466, 3058, 3557, 3576, 3921 |
| BspQI | GCTCTTC | 2 cut(s) | 1963, 4228 |
| BspT104I | TTCGAA | 1 cut(s) | 4521 |
| BspT107I | GGYRCC | 1 cut(s) | 3771 |
| BspTNI | GGTCTC | 1 cut(s) | 1298 |
| BsrBI | CCGCTC | 1 cut(s) | 2409 |
| BsrDI | GCAATG | 5 cut(s) | 351, 426, 1089, 2295, 3454 |
| BsrFI | RCCGGY | 4 cut(s) | 361, 679, 1991, 2638 |
| BsrGI | TGTACA | 4 cut(s) | 451, 3081, 3369, 3430 |
| BssAI | RCCGGY | 4 cut(s) | 361, 679, 1991, 2638 |
| BssNI | GRCGYC | 3 cut(s) | 2950, 3317, 3453 |
| BssSI | CACGAG | 1 cut(s) | 252 |
| BssT1I | CCWWGG | 9 cut(s) | 647, 912, 1154, 2094, 2954, 3820, 4319, 4396, 4574 |
| Bst2BI | CACGAG | 1 cut(s) | 252 |
| Bst2UI | CCWGG | 9 cut(s) | 386, 1444, 1503, 1660, 2675, 2891, 2946, 3393, 4492 |
| Bst4CI | ACNGT | 7 cut(s) | 466, 523, 708, 1030, 2086, 3575, 4343 |
| Bst6I | CTCTTC | 7 cut(s) | 231, 648, 1963, 3061, 4008, 4228, 4264 |
| BstACI | GRCGYC | 3 cut(s) | 2950, 3317, 3453 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2771 |
| BstAUI | TGTACA | 4 cut(s) | 451, 3081, 3369, 3430 |
| BstBAI | YACGTR | 2 cut(s) | 833, 1549 |
| BstBI | TTCGAA | 1 cut(s) | 4521 |
| BstDSI | CCRYGG | 4 cut(s) | 2094, 2728, 3820, 4319 |
| BstFNI | CGCG | 4 cut(s) | 2572, 3109, 3415, 4466 |
| BstH2I | RGCGCY | 1 cut(s) | 2780 |
| BstHHI | GCGC | 1 cut(s) | 2779 |
| BstMAI | GTCTC | 9 cut(s) | 280, 691, 1057, 1298, 2380, 2838, 3324, 3899, 4573 |
| BstMCI | CGRYCG | 1 cut(s) | 1825 |
| BstNI | CCWGG | 9 cut(s) | 386, 1444, 1503, 1660, 2675, 2891, 2946, 3393, 4492 |
| BstNSI | RCATGY | 3 cut(s) | 1255, 2769, 3545 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2174 |
| BstSFI | CTRYAG | 4 cut(s) | 225, 1750, 1769, 3926 |
| BstSLI | GKGCMC | 1 cut(s) | 817 |
| BstSNI | TACGTA | 1 cut(s) | 833 |
| BstUI | CGCG | 4 cut(s) | 2572, 3109, 3415, 4466 |
| BstV1I | GCAGC | 7 cut(s) | 192, 1569, 1797, 2350, 2786, 3047, 3834 |
| BstV2I | GAAGAC | 2 cut(s) | 1156, 2903 |
| BstX2I | RGATCY | 4 cut(s) | 16, 113, 122, 260 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4299 |
| BstYI | RGATCY | 4 cut(s) | 16, 113, 122, 260 |
| Bsu15I | ATCGAT | 1 cut(s) | 4449 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3691 |
| BsuTUI | ATCGAT | 1 cut(s) | 4449 |
| BtgI | CCRYGG | 4 cut(s) | 2094, 2728, 3820, 4319 |
| BtgZI | GCGATG | 1 cut(s) | 2467 |
| BtrI | CACGTC | 1 cut(s) | 1833 |
| BtsI | GCAGTG | 5 cut(s) | 86, 243, 1417, 3935, 4212 |
| BveI | ACCTGC | 2 cut(s) | 2614, 3212 |
| CciI | TCATGA | 2 cut(s) | 1431, 1912 |
| CfoI | GCGC | 1 cut(s) | 2779 |
| Cfr10I | RCCGGY | 4 cut(s) | 361, 679, 1991, 2638 |
| Cfr9I | CCCGGG | 1 cut(s) | 783 |
| ClaI | ATCGAT | 1 cut(s) | 4449 |
| CseI | GACGC | 5 cut(s) | 521, 2939, 3306, 3404, 3442 |
| CspAI | ACCGGT | 2 cut(s) | 361, 1991 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 541, 576, 2727, 2762 |
| DraI | TTTAAA | 3 cut(s) | 1480, 3399, 4156 |
| EaeI | YGGCCR | 3 cut(s) | 190, 3104, 3410 |
| Eam1104I | CTCTTC | 7 cut(s) | 231, 648, 1963, 3061, 4008, 4228, 4264 |
| EarI | CTCTTC | 7 cut(s) | 231, 648, 1963, 3061, 4008, 4228, 4264 |
| EciI | GGCGGA | 3 cut(s) | 295, 567, 2660 |
| Eco105I | TACGTA | 1 cut(s) | 833 |
| Eco130I | CCWWGG | 9 cut(s) | 647, 912, 1154, 2094, 2954, 3820, 4319, 4396, 4574 |
| Eco24I | GRGCYC | 2 cut(s) | 817, 3583 |
| Eco31I | GGTCTC | 1 cut(s) | 1298 |
| Eco47I | GGWCC | 7 cut(s) | 344, 1151, 1392, 1714, 2680, 3163, 3664 |
| Eco57I | CTGAAG | 3 cut(s) | 29, 3243, 4416 |
| Eco81I | CCTNAGG | 1 cut(s) | 3691 |
| Eco88I | CYCGRG | 2 cut(s) | 783, 2233 |
| EcoO109I | RGGNCCY | 4 cut(s) | 814, 1151, 2680, 3163 |
| EcoRI | GAATTC | 2 cut(s) | 1873, 3722 |
| EcoRII | CCWGG | 9 cut(s) | 384, 1442, 1501, 1658, 2673, 2889, 2944, 3391, 4490 |
| EcoT14I | CCWWGG | 9 cut(s) | 647, 912, 1154, 2094, 2954, 3820, 4319, 4396, 4574 |
| EcoT22I | ATGCAT | 1 cut(s) | 1762 |
| EcoT38I | GRGCYC | 2 cut(s) | 817, 3583 |
| ErhI | CCWWGG | 9 cut(s) | 647, 912, 1154, 2094, 2954, 3820, 4319, 4396, 4574 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2895, 2927 |
| FaqI | GGGAC | 5 cut(s) | 930, 961, 2693, 3176, 4196 |
| FauI | CCCGC | 1 cut(s) | 4095 |
| FauNDI | CATATG | 1 cut(s) | 4566 |
| FbaI | TGATCA | 2 cut(s) | 1414, 1915 |
| FblI | GTMKAC | 3 cut(s) | 1099, 3019, 3211 |
| FriOI | GRGCYC | 2 cut(s) | 817, 3583 |
| GlaI | GCGC | 1 cut(s) | 2778 |
| GsaI | CCCAGC | 2 cut(s) | 1021, 3992 |
| GsuI | CTGGAG | 3 cut(s) | 1642, 4084, 4493 |
| HaeII | RGCGCY | 1 cut(s) | 2780 |
| HgaI | GACGC | 5 cut(s) | 521, 2939, 3306, 3404, 3442 |
| HhaI | GCGC | 1 cut(s) | 2779 |
| Hin1I | GRCGYC | 3 cut(s) | 2950, 3317, 3453 |
| Hin6I | GCGC | 1 cut(s) | 2777 |
| HinP1I | GCGC | 1 cut(s) | 2777 |
| HincII | GTYRAC | 6 cut(s) | 391, 1901, 2419, 3177, 3201, 4360 |
| HindII | GTYRAC | 6 cut(s) | 391, 1901, 2419, 3177, 3201, 4360 |
| HindIII | AAGCTT | 5 cut(s) | 2194, 2492, 2854, 3796, 4135 |
| Hpy99I | CGWCG | 2 cut(s) | 3950, 4343 |
| HpyAV | CCTTC | 8 cut(s) | 659, 728, 1462, 1919, 2808, 2897, 3218, 3321 |
| HpyCH4III | ACNGT | 7 cut(s) | 466, 523, 708, 1030, 2086, 3575, 4343 |
| Hsp92I | GRCGYC | 3 cut(s) | 2950, 3317, 3453 |
| HspAI | GCGC | 1 cut(s) | 2777 |
| KflI | GGGWCCC | 2 cut(s) | 2680, 3163 |
| Kpn2I | TCCGGA | 1 cut(s) | 2970 |
| Ksp22I | TGATCA | 2 cut(s) | 1414, 1915 |
| LguI | GCTCTTC | 2 cut(s) | 1963, 4228 |
| LmnI | GCTCC | 8 cut(s) | 253, 580, 738, 1043, 1190, 1806, 2116, 4282 |
| Lsp1109I | GCAGC | 7 cut(s) | 192, 1569, 1797, 2350, 2786, 3047, 3834 |
| MbiI | CCGCTC | 1 cut(s) | 2409 |
| MfeI | CAATTG | 1 cut(s) | 205 |
| MflI | RGATCY | 4 cut(s) | 16, 113, 122, 260 |
| MhlI | GDGCHC | 7 cut(s) | 543, 817, 1195, 1591, 2113, 3583, 4279 |
| MlyI | GAGTC | 5 cut(s) | 248, 282, 2414, 4178, 4609 |
| MmeI | TCCRAC | 6 cut(s) | 1370, 1665, 1969, 2436, 3466, 3526 |
| Mph1103I | ATGCAT | 1 cut(s) | 1762 |
| MroI | TCCGGA | 1 cut(s) | 2970 |
| MslI | CAYNNNNRTG | 8 cut(s) | 398, 1231, 1917, 2440, 3077, 3365, 4318, 4513 |
| MssI | GTTTAAAC | 1 cut(s) | 1480 |
| MunI | CAATTG | 1 cut(s) | 205 |
| Mva1269I | GAATGC | 2 cut(s) | 784, 901 |
| MvaI | CCWGG | 9 cut(s) | 386, 1444, 1503, 1660, 2675, 2891, 2946, 3393, 4492 |
| MvnI | CGCG | 4 cut(s) | 2572, 3109, 3415, 4466 |
| NciI | CCSGG | 5 cut(s) | 443, 498, 784, 785, 2115 |
| NcoI | CCATGG | 3 cut(s) | 2094, 3820, 4319 |
| NdeI | CATATG | 1 cut(s) | 4566 |
| NheI | GCTAGC | 2 cut(s) | 1535, 2761 |
| NmeAIII | GCCGAG | 4 cut(s) | 1777, 4166, 4343, 4480 |
| NmuCI | GTSAC | 8 cut(s) | 106, 1132, 1169, 1970, 3250, 4294, 4543, 4640 |
| NsiI | ATGCAT | 1 cut(s) | 1762 |
| NspI | RCATGY | 3 cut(s) | 1255, 2769, 3545 |
| NspV | TTCGAA | 1 cut(s) | 4521 |
| OliI | CACNNNNGTG | 2 cut(s) | 398, 1231 |
| PaeI | GCATGC | 2 cut(s) | 2769, 3545 |
| PaeR7I | CTCGAG | 1 cut(s) | 2233 |
| PagI | TCATGA | 2 cut(s) | 1431, 1912 |
| PasI | CCCWGGG | 1 cut(s) | 1502 |
| PciI | ACATGT | 1 cut(s) | 1251 |
| PciSI | GCTCTTC | 2 cut(s) | 1963, 4228 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1480, 4042 |
| PctI | GAATGC | 2 cut(s) | 784, 901 |
| PfeI | GAWTC | 7 cut(s) | 57, 152, 200, 3259, 3839, 4459, 4529 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 966, 2526 |
| PinAI | ACCGGT | 2 cut(s) | 361, 1991 |
| Ple19I | CGATCG | 1 cut(s) | 1825 |
| PleI | GAGTC | 5 cut(s) | 247, 282, 2414, 4178, 4609 |
| PmeI | GTTTAAAC | 1 cut(s) | 1480 |
| PpsI | GAGTC | 5 cut(s) | 247, 282, 2414, 4178, 4609 |
| Ppu21I | YACGTR | 2 cut(s) | 833, 1549 |
| PpuMI | RGGWCCY | 3 cut(s) | 1151, 2680, 3163 |
| PscI | ACATGT | 1 cut(s) | 1251 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2174 |
| PshBI | ATTAAT | 2 cut(s) | 2448, 3050 |
| PsiI | TTATAA | 1 cut(s) | 2399 |
| Psp1406I | AACGTT | 2 cut(s) | 3280, 4045 |
| Psp5II | RGGWCCY | 3 cut(s) | 1151, 2680, 3163 |
| Psp6I | CCWGG | 9 cut(s) | 384, 1442, 1501, 1658, 2673, 2889, 2944, 3391, 4490 |
| PspFI | CCCAGC | 2 cut(s) | 1017, 3988 |
| PspGI | CCWGG | 9 cut(s) | 384, 1442, 1501, 1658, 2673, 2889, 2944, 3391, 4490 |
| PspOMI | GGGCCC | 1 cut(s) | 813 |
| PspPPI | RGGWCCY | 3 cut(s) | 1151, 2680, 3163 |
| PspXI | VCTCGAGB | 1 cut(s) | 2233 |
| PstI | CTGCAG | 1 cut(s) | 3930 |
| PsuI | RGATCY | 4 cut(s) | 16, 113, 122, 260 |
| PvuI | CGATCG | 1 cut(s) | 1825 |
| RseI | CAYNNNNRTG | 8 cut(s) | 398, 1231, 1917, 2440, 3077, 3365, 4318, 4513 |
| SapI | GCTCTTC | 2 cut(s) | 1963, 4228 |
| ScaI | AGTACT | 2 cut(s) | 3007, 3816 |
| SchI | GAGTC | 5 cut(s) | 248, 282, 2414, 4178, 4609 |
| SduI | GDGCHC | 7 cut(s) | 543, 817, 1195, 1591, 2113, 3583, 4279 |
| SfcI | CTRYAG | 4 cut(s) | 225, 1750, 1769, 3926 |
| Sfr274I | CTCGAG | 1 cut(s) | 2233 |
| SfuI | TTCGAA | 1 cut(s) | 4521 |
| SinI | GGWCC | 7 cut(s) | 344, 1151, 1392, 1714, 2680, 3163, 3664 |
| SlaI | CTCGAG | 1 cut(s) | 2233 |
| SmaI | CCCGGG | 1 cut(s) | 785 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 398, 1231, 1917, 2440, 3077, 3365, 4318, 4513 |
| SmlI | CTYRAG | 3 cut(s) | 101, 1868, 2233 |
| SmoI | CTYRAG | 3 cut(s) | 101, 1868, 2233 |
| SnaBI | TACGTA | 1 cut(s) | 833 |
| SphI | GCATGC | 2 cut(s) | 2769, 3545 |
| SspI | AATATT | 3 cut(s) | 2964, 3247, 3514 |
| StyI | CCWWGG | 9 cut(s) | 647, 912, 1154, 2094, 2954, 3820, 4319, 4396, 4574 |
| TaaI | ACNGT | 7 cut(s) | 466, 523, 708, 1030, 2086, 3575, 4343 |
| TatI | WGTACW | 8 cut(s) | 451, 1256, 3005, 3081, 3127, 3369, 3430, 3814 |
| TauI | GCSGC | 6 cut(s) | 1749, 2273, 2409, 3109, 3415, 4380 |
| TfiI | GAWTC | 7 cut(s) | 57, 152, 200, 3259, 3839, 4459, 4529 |
| TseFI | GTSAC | 8 cut(s) | 106, 1132, 1169, 1970, 3250, 4294, 4543, 4640 |
| TseI | GCWGC | 7 cut(s) | 180, 1582, 1810, 2363, 2774, 3035, 3847 |
| Tsp45I | GTSAC | 8 cut(s) | 106, 1132, 1169, 1970, 3250, 4294, 4543, 4640 |
| TspGWI | ACGGA | 4 cut(s) | 135, 1511, 1793, 3562 |
| TspMI | CCCGGG | 1 cut(s) | 783 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 966, 2526 |
| VpaK11BI | GGWCC | 7 cut(s) | 344, 1151, 1392, 1714, 2680, 3163, 3664 |
| VspI | ATTAAT | 2 cut(s) | 2448, 3050 |
| XapI | RAATTY | 5 cut(s) | 1873, 2308, 3145, 3722, 4651 |
| XbaI | TCTAGA | 1 cut(s) | 2660 |
| XceI | RCATGY | 3 cut(s) | 1255, 2769, 3545 |
| XhoI | CTCGAG | 1 cut(s) | 2233 |
| XmaI | CCCGGG | 1 cut(s) | 783 |
| XmaJI | CCTAGG | 1 cut(s) | 647 |
| XmiI | GTMKAC | 3 cut(s) | 1099, 3019, 3211 |
| ZrmI | AGTACT | 2 cut(s) | 3007, 3816 |
| Zsp2I | ATGCAT | 1 cut(s) | 1762 |