Rorug07G0164900

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
13221792 .. 13222418
627 bp
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UTR
Exon/CDS
Intron
Rorug07G0164900.1

Sequence Viewer

Length: 246 bp
ATGGAGGGCCTTGAAGGCGGTTATGTGGGTTTACTGTATGATGAGGTTTCCCTGCAGAATGTGTTAGACATGATAGCTGATTGGACTCCTGAAGAAAGACAGATGCTGAGAGATAAGGTTCCGAAAATGGGTCTAAAGACACCATTTCGTGATGGATTACTCAAGCAAGTTGCCGAAGATGTAGTAAAGTTTGCAAAGGATGGCCTGGAAAGAAGAGGAAACAACAGATATGCATGGCAGGTGTAA

Protein Analysis

81

Amino Acids

9.33

Weight (kDa)

5.07

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 229
Acc36I ACCTGC 1 cut(s) 229
AciI CCGC 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 2 cut(s) 7, 202
AspS9I GGNCC 1 cut(s) 7
BccI CCATC 2 cut(s) 146, 194
BciT130I CCWGG 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 229
BglI GCCNNNNNGGC 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 98
BshFI GGCC 2 cut(s) 9, 204
BslI CCNNNNNNNGG 1 cut(s) 128
BsnI GGCC 2 cut(s) 9, 204
BspACI CCGC 1 cut(s) 18
BspANI GGCC 2 cut(s) 9, 204
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 53
BsuRI GGCC 2 cut(s) 9, 204
BtsCI GGATG 1 cut(s) 205
BveI ACCTGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 7
CviAII CATG 2 cut(s) 70, 234
CviJI RGCY 3 cut(s) 9, 77, 204
CviKI_1 RGCY 3 cut(s) 9, 77, 204
DdeI CTNAG 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 2 cut(s) 73, 237
FaiI YATR 5 cut(s) 24, 39, 71, 231, 235
FatI CATG 2 cut(s) 69, 233
FokI GGATG 1 cut(s) 212
HaeIII GGCC 2 cut(s) 9, 204
Hin1II CATG 2 cut(s) 73, 237
HinfI GANTC 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 89, 149
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 55, 194, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 2 cut(s) 73, 237
LpnPI CCDG 5 cut(s) 65, 102, 191, 218, 224
LweI GCATC 1 cut(s) 93
MboII GAAGA 3 cut(s) 104, 188, 225
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 2 cut(s) 37, 209
Mph1103I ATGCAT 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 15
NlaIII CATG 2 cut(s) 73, 237
NlaIV GGNNCC 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 235
PaqCI CACCTGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 206
SetI ASST 4 cut(s) 48, 79, 120, 243
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 53
SgeI CNNG 9 cut(s) 23, 64, 82, 101, 161, 175, 179, 217, 218
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SsiI CCGC 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.