Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000906

Physical Location & Seq

Genomic Coordinates Reverse (-)

27407190 .. 27410364

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0250000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACTGCTGAAGCTTTGCAAGTTGCTAAGGCATACCGCCACCTTCTCAAAGCTGTCAAGAACCACGTTTCCAAAGAAGACACTAAGCGGCATTTCAGAGATTATGTATTTGAGCAATTATGGTTCCAGGGTAGTGGTAAACAATTCTGGTGTGGAAGAAAACAAGGAAAAGACAGTGGTTATCTAAAGCTTGACTTCTTTGTTGTTGGTTGGGAATTGCAGGGATCAGCTGTGTATAAGGATACTGCCGCGAATGCTGGTCTACCCGTTCGGAGATTCAAGTTTATACAAGCAGTTCCGGATGCAACTAGTGACCATGAAATTCGGAGGGAATCTGTAGGAGAAGAAGGGAATCCAGATTCAAGCTGTGATAGAGCAATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

128

Amino Acids

14.6

Weight (kDa)

8.55

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT3G09620 AT3G09620
fragaria_vesca	FvH4_3g27090 FvH4_4g11730 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270
malus_domestica	MD06G1002800.v1.1 MD09G1086200.v1.1
prunus_persica	Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1
pyrus_communis	pycom06g00290 pycom09g01160
rosa_chinensis	RchiOBHm_Chr5g0049651 RchiOBHm_Chr7g0217001
rosa_laevigata	RLG00000002515 RLG00000034630
rosa_multiflora	Rmu_co8441089.1_g000001 Rmu_sc0001725.1_g000004 Rmu_sc0002114.1_g000002 Rmu_sc0013777.1_g000004 Rmu_sc0013777.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032010 Rroxscaffold_3G00242640
rosa_rugosa	Rorug05G0249600 Rorug05G0249700 Rorug05G0249800 Rorug05G0249900 Rorug05G0250000 Rorug05G0250100 Rorug05G0250200 Rorug07G0164800 Rorug07G0164900 Rorug07G0165000 Rorug07G0165100 Rorug07G0165200 Rorug07G0165300 Rorug07G0165400.1 Rorug07G0165500.1 Rorug07G0165600
rosa_samantha	Rh5AG326000 Rh5BG337300 Rh5CG362000 Rh5DG349500 Rh7AG305000 Rh7BG296500 Rh7CG324100 Rh7DG305100
rosa_wichuraiana	Rw5G030810 Rw7G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	262
AccII	CGCG	1 cut(s)	251
AccIII	TCCGGA	1 cut(s)	298
AciI	CCGC	3 cut(s)	37, 88, 249
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	280, 363
AhlI	ACTAGT	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	126
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	5 cut(s)	14, 53, 190, 230, 366
AluI	AGCT	5 cut(s)	14, 53, 190, 230, 366
AlwI	GGATC	1 cut(s)	232
Aor13HI	TCCGGA	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	235
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	89, 249
BlsI	GCNGC	2 cut(s)	90, 250
Bme1390I	CCNGG	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	259
Bsp13I	TCCGGA	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	224
BspACI	CCGC	3 cut(s)	37, 88, 249
BspEI	TCCGGA	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	384
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	27, 84
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	251
BstKTI	GATC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	181
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	5 cut(s)	14, 53, 190, 230, 366
CviKI_1	RGCY	5 cut(s)	14, 53, 190, 230, 366
DdeI	CTNAG	2 cut(s)	27, 84
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	320
FaiI	YATR	6 cut(s)	34, 105, 121, 237, 287, 318
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	89, 249
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	89, 249
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	2 cut(s)	89, 249
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	1 cut(s)	320
HindIII	AAGCTT	2 cut(s)	12, 188
HinfI	GANTC	4 cut(s)	276, 332, 352, 359
HpaII	CCGG	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	140, 263
Hpy188I	TCNGA	3 cut(s)	98, 273, 327
Hpy188III	TCNNGA	3 cut(s)	58, 299, 356
Hpy8I	GTNNAC	2 cut(s)	140, 263
HpyAV	CCTTC	2 cut(s)	53, 341
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	19, 220, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	27, 84
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	320
Kpn2I	TCCGGA	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	224
LpnPI	CCDG	7 cut(s)	113, 133, 140, 206, 243, 312, 369
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	3 cut(s)	89, 168, 356
MluCI	AATT	4 cut(s)	116, 143, 215, 321
MnlI	CCTC	1 cut(s)	321
MroI	TCCGGA	1 cut(s)	298
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	4 cut(s)	276, 332, 352, 359
PkrI	GCNGC	2 cut(s)	90, 250
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	230
SatI	GCNGC	2 cut(s)	89, 249
Sau3AI	GATC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	7 cut(s)	16, 45, 55, 69, 192, 232, 368
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	336
SpeI	ACTAGT	1 cut(s)	308
Sse9I	AATT	4 cut(s)	116, 143, 215, 321
SsiI	CCGC	3 cut(s)	37, 88, 249
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	1 cut(s)	69
TasI	AATT	4 cut(s)	116, 143, 215, 321
TauI	GCSGC	2 cut(s)	91, 251
TfiI	GAWTC	4 cut(s)	276, 332, 352, 359
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	262
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.