Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000906

Physical Location & Seq

Genomic Coordinates Forward (+)

32754613 .. 32757993

Gene Structure 3381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3381 bp

ATGGAAGAGAGCAAACATAAATCTAGGAAGGAAGGGGAAGCTAAGAGGAGTCATCGAGATCGGGAGCGGGATCGTGAGAAGGAGAAGAAAGTAGATAGACACAGAGAAAAAGATAGAGGAGATAAGAGTCGTGACAGCCGAAGATATGAGCGAGAAAAGAGTTCTGATTCTGAGGAGAGGTACGTGAGAGAGAAGCATCGAGATAAGGAGGTTGATAGCATACGAGGCAGAGATGATGAACGAGAGAGAAGCAAAGATAGGAAAAGGGATAAAGATAAAGAGAGGGACAAGGAGAGGGAGAGGGAGAGAGTCAAAGAAAAGGAGAAGAGGGAGCGGAAGGAGAGGGAAAGAGAAAAAGAGAGGGAGAGAAGGGAACGTGAAAGGGAGGCAGAAGAGAGGGCGAGGGAGAAGAGGGAGAGGGAAAAGGAAAAAGATCGAGAGAGGAGGATAAGGGAGAGGGAGAGGGAGAAGCATAGGGATGTTGATACTGATGATTCTGAGGATGATCTTAAGGAGCGTGGTAGGAAGCGGCATAAGAAGAGTGATAGCGAGTACAAGGAGAGAGATCGGGAAAGGAGTATTAGTAGGTCAAACAGACATAGGGATGATGGAATTGAGAGCCCAAGAAAGAGGAGTGTTGAAGATGATTCAGATAAAAAGGAGAAGCCAACCCGTGAGGAGGAGTTAGAGGACGAACAACGGAAATTGGATGAGGAAATGGAAAAGCGGAGGAGGAGAGTTCAGGAGTGGCAAGAGTTAAAGAGAAAGAAGGAAGAAGATGAGAGAGAGAAGCGTGGGGAAGATAATGTTGATGACACCAAGTCTGGAAAGACCTGGACTCTTGATGGAGAATCTGATGACGAAGAAGCAGGCAAATCAGAGTCAGGTATGGACGTTGATAGGGAGGTCAATGGGGATGATCTTACTGATGGAGAAGTTGTAGATGCCATTGTGCCAGATGTTAATACAACAGCTGCTGCAGGGAATGAGGAAGATGATCCATTCGAAGCTTTTATGCAGTCTGTGGTGATGCCCGAAGTTGCGAAGCTGAATGCTACTGTGGAAGCCTCAATTGTTGATGACAAGAACAAGGAGAAAAAGGTTGATACAAGTAATGGTGAAAAGCTGAGGGCAGGTTCAAATAAATCTATTGGCAGAATAATTCCTGGGGAGGATTCTGACTCGGATTACGGGGACCTTGAGAATGATGACGATCCTTTAGAAAATGAAGATGATGATGAGTTCATAAAAAGAGTGAAAAAGACGAAAGCTGAGAAACTTTCCTTAGTTGACCACTCGAAGATAGATTATATACCATTCCGTAAAAATTTTTATATCGAGGTGAAGGAGATCTCAAGGATGATGCCAGATGAGGTTGGTGCATACCGGAAACAATTGGAATTGAAGATACATGGTAAGGATGTGCCAAAGCCCATAAAGAGCTGGCACCAAACTGGACTTACAAGTAAAATCTTGGATATAATAAAGAAGCTCAACTATGAAAAGCCAATGCCAATTCAAGCTCAGGCACTGCCCATAATTATGAGTGGTCGAGACTGCATTGGCGTTGGAAAAACTGGATCAGGCAAAACCCTTGCATTTGTACTGCCAATGCTGAGGCATATCAAGGACCAGCCACCTGTGGTAGCTGGGGATGGGCCTATTGGGCTTATTATGGCACCAACCAGGGAGCTTGTTCAGCAGATTCACGGTGATATCAAAAAGTTTGCCAAGGTTCTGGGTCTCAGGTGTGTGCCTGTATACGGAGGTTCAGGTGTTGCACAACAAATTAGTGAACTGAAGCGGGGTGCTGAAATTGTTGTCTGTACTCCTGGTAGGATGATTGACATACTTTGCACAAGTGGAGGAAAAATTACAAATCTGCGTAGAGTTACTTATTTGGTCATGGATGAAGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACTCGAATTGTTCAAAATATTCGTCCAGATCGCCAAACCGTATTATTTTCTGCCACTTTCCCTCGGCAGGTTGAAGTTTTGGCTCGTAAAGTCTTAGATAAACCTGTGGAAATACAAGTTGGCGGAAGGAGTGTTGTGAATAAGGACATCATGCAATTGGTCGAAGTGAGGCAGGAACATGAAAGGTTCTTGAGATTGTTAGAGTTACTTGGAGAATGGTATGAAAAAGGAAAAATTTTGATATTTGTACAATCACAGGACAAATGTGATGCTTTATTTAGAGATCTGCTTAAGCATGGATATCCTTGTCTCTCACTTCATGGGGCCAAAGATCAAACAGATCGTGAGTCCACCATAGCTGATTTTAAGAGCAATGTTTGTAATTTGTTGATTGCAACCAGTGTTGCTGCTAGAGGGCTAGATGTCAAGGAGCTTGAACTGGTGATAAATTTTGATGTCCCAAATCACTATGAGGACTATGTTCACCGTGTTGGACGTACCGGCCGTGCTGGCCGGAAAGGCTGTGCTATAACTTTTGTCTCTGAGGAAGATGCTAGATATGCTCCAGATCTTGTGAAAGCATTGGAACTTTCTGAGCAAGTTGTTCCAGATGACTTGAAATCTCTTGCTGATAATTTTATGTCAAAAGTAAATCAGGGACTTGCACAAGCCCATGGGACTGGTTATGGGGGAAGTGGCTTTAAATTTAATGTAGAGGAAGATGAAGTAAGGAGGGCGGCAAAGAAAGCACAGGCTAAAGAATATGGTTTTGAGGAAGACAAGTCAGATTCAGAAGATGAAGATGAAGGTATTCGAAAAGCAGGGGGTGATATCTCTCAGCAGGCTGCTCTTGCTCAGATAGCTGCTATTGCTGCTGCCTCCAAAGCTACTACAGCAATGCAGACTCCTGCTTCTGCTGCCCAACTGCTTCCCAACGGTGGACTGCCTGTCGCTCTTCCAGGCGTTGGTGGTGTAGGTGCATTACCAGGCACAGCAGCAGTTGTGCCTGGGACTGGTCTGCCTCTTGTTGGCAGTGATGGGGCAGCTCGGGCTGCAGCACTTGCGGCTGCCATGAACTTACAGCATAACCTGGCAAAGATCCACGCTGATGCAATGCCTGAACACTATGAAGCAGAGTTGGAGATAAATGATTTTCCCCAGAATGCTAGATGGAAAGTCACCCACAAGGAAACGTTGGGCCCTATATCAGAGTGGACTGGAGCTGCGATTACTACCAGGGGTCAGTATTTCCCACCAGGGAAGGTTCCAGGACCAGGAGATCGCAAGCTCTACTTGTTTATTGAGGGCCCTACCGAACAGTCTGTCAAGAGAGCTAAAGCAGAATTAAAAGGTGTTTTGGAAGAGATCTCAAATCAGGCATTATCACTCCCTGGAGGAAATCAGCAAGGCAGATATCAAGTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

1126

Amino Acids

127.81

Weight (kDa)

5.97

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	505 - 676	4.1e-49	DEAD/DEAH box helicase
Helicase_C	PF00271	716 - 822	2e-29	Helicase conserved C-terminal domain
KH_12	PF23469	1028 - 1104	4.6e-14	KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT3G09620 AT3G09620
fragaria_vesca	FvH4_3g27090 FvH4_4g11730 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270
malus_domestica	MD06G1002800.v1.1 MD09G1086200.v1.1
prunus_persica	Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1
pyrus_communis	pycom06g00290 pycom09g01160
rosa_chinensis	RchiOBHm_Chr5g0049651 RchiOBHm_Chr7g0217001
rosa_laevigata	RLG00000002515 RLG00000034630
rosa_multiflora	Rmu_co8441089.1_g000001 Rmu_sc0001725.1_g000004 Rmu_sc0002114.1_g000002 Rmu_sc0013777.1_g000004 Rmu_sc0013777.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032010 Rroxscaffold_3G00242640
rosa_rugosa	Rorug05G0249600 Rorug05G0249700 Rorug05G0249800 Rorug05G0249900 Rorug05G0250000 Rorug05G0250100 Rorug05G0250200 Rorug07G0164800 Rorug07G0164900 Rorug07G0165000 Rorug07G0165100 Rorug07G0165200 Rorug07G0165300 Rorug07G0165400.1 Rorug07G0165500.1 Rorug07G0165600
rosa_samantha	Rh5AG326000 Rh5BG337300 Rh5CG362000 Rh5DG349500 Rh7AG305000 Rh7BG296500 Rh7CG324100 Rh7DG305100
rosa_wichuraiana	Rw5G030810 Rw7G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1124, 2011
AccB1I	GGYRCC	2 cut(s)	1446, 1678
AccB7I	CCANNNNNTGG	1 cut(s)	2918
AccBSI	CCGCTC	2 cut(s)	67, 334
AccI	GTMKAC	1 cut(s)	1761
AciI	CCGC	8 cut(s)	67, 334, 529, 727, 1804, 2076, 2690, 3017
AclI	AACGTT	1 cut(s)	3146
AclWI	GGATC	5 cut(s)	78, 992, 1208, 1588, 3046
AcoI	YGGCCR	2 cut(s)	2455, 2464
AcsI	RAATTY	4 cut(s)	1327, 2187, 2401, 2657
AcuI	CTGAAG	1 cut(s)	1820
AfaI	GTAC	6 cut(s)	182, 554, 1605, 1828, 2202, 2452
AfiI	CCNNNNNNNGG	8 cut(s)	679, 1763, 2020, 2891, 2918, 2966, 2981, 3227
AflII	CTTAAG	2 cut(s)	509, 2243
AgsI	TTSAA	9 cut(s)	641, 1140, 1405, 1520, 1943, 1967, 2027, 2390, 2572
AhdI	GACNNNNNGTC	2 cut(s)	820, 2900
AjuI	GAANNNNNNNTTGG	2 cut(s)	2055, 2087
Alw26I	GTCTC	4 cut(s)	1548, 1748, 2267, 2497
AlwI	GGATC	5 cut(s)	78, 992, 1208, 1588, 3046
AlwNI	CAGNNNCTG	2 cut(s)	977, 1531
Ama87I	CYCGRG	1 cut(s)	3000
AoxI	GGCC	6 cut(s)	1658, 2277, 2455, 2464, 3151, 3259
ApaI	GGGCCC	2 cut(s)	3155, 3263
ApoI	RAATTY	4 cut(s)	1327, 2187, 2401, 2657
ArsI	GACNNNNNNTTYG	6 cut(s)	1922, 1954, 1960, 1992, 3261, 3293
Asp700I	GAANNNNTTC	1 cut(s)	2763
AspS9I	GGNCC	9 cut(s)	1195, 1630, 1658, 2277, 3151, 3152, 3224, 3259, 3260
AsuHPI	GGTGA	8 cut(s)	1039, 1130, 1354, 1724, 2407, 2429, 2792, 3124
AsuII	TTCGAA	2 cut(s)	1005, 2767
AvaI	CYCGRG	1 cut(s)	3000
AvaII	GGWCC	3 cut(s)	1195, 1630, 3224
BaeGI	GKGCMC	2 cut(s)	3155, 3263
BanI	GGYRCC	2 cut(s)	1446, 1678
BanII	GRGCYC	3 cut(s)	623, 3155, 3263
BbsI	GAAGAC	1 cut(s)	2736
BbvCI	CCTCAGC	2 cut(s)	1127, 1616
BccI	CCATC	6 cut(s)	602, 839, 923, 1649, 2984, 3117
BceAI	ACGGC	1 cut(s)	2442
BcoDI	GTCTC	4 cut(s)	1548, 1748, 2267, 2497
BfaI	CTAG	5 cut(s)	24, 2364, 2372, 2508, 3120
BfmI	CTRYAG	3 cut(s)	978, 2844, 3006
BfrI	CTTAAG	2 cut(s)	509, 2243
BfuAI	ACCTGC	2 cut(s)	1124, 2011
BglI	GCCNNNNNGGC	3 cut(s)	1666, 2463, 2472
BglII	AGATCT	4 cut(s)	1350, 2236, 2521, 3318
Bme18I	GGWCC	3 cut(s)	1195, 1630, 3224
BmeRI	GACNNNNNGTC	2 cut(s)	820, 2900
BmeT110I	CYCGRG	1 cut(s)	3000
BmgT120I	GGNCC	9 cut(s)	1195, 1630, 1658, 2277, 3151, 3152, 3224, 3259, 3260
BmiI	GGNNCC	7 cut(s)	1196, 1448, 1680, 2278, 3153, 3219, 3261
BmsI	GCATC	7 cut(s)	205, 934, 1020, 1353, 2212, 2494, 3052
BpiI	GAAGAC	1 cut(s)	2736
BpmI	CTGGAG	3 cut(s)	2502, 3192, 3366
Bpu10I	CCTNAGC	3 cut(s)	1127, 1524, 1616
Bpu14I	TTCGAA	2 cut(s)	1005, 2767
BpuEI	CTTGAG	3 cut(s)	1220, 1339, 2164
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	1212
BsaI	GGTCTC	1 cut(s)	1748
BsaJI	CCNNGG	9 cut(s)	1166, 1686, 1731, 2015, 2626, 2960, 3189, 3209, 3343
BsaWI	WCCGGW	1 cut(s)	1386
BsaXI	ACNNNNNCTCC	4 cut(s)	568, 598, 924, 954
Bsc4I	CCNNNNNNNGG	8 cut(s)	679, 1763, 2020, 2891, 2918, 2966, 2981, 3227
Bse118I	RCCGGY	1 cut(s)	2453
Bse1I	ACTGG	7 cut(s)	1459, 1582, 2352, 2397, 2638, 2971, 3175
Bse3DI	GCAATG	3 cut(s)	2332, 2856, 3072
Bse8I	GATNNNNATC	1 cut(s)	1212
BseDI	CCNNGG	9 cut(s)	1166, 1686, 1731, 2015, 2626, 2960, 3189, 3209, 3343
BseJI	GATNNNNATC	1 cut(s)	1212
BseLI	CCNNNNNNNGG	8 cut(s)	679, 1763, 2020, 2891, 2918, 2966, 2981, 3227
BseMI	GCAATG	3 cut(s)	2332, 2856, 3072
BseNI	ACTGG	7 cut(s)	1459, 1582, 2352, 2397, 2638, 2971, 3175
BseRI	GAGGAG	9 cut(s)	61, 132, 188, 457, 646, 692, 695, 745, 748
BseSI	GKGCMC	2 cut(s)	3155, 3263
BseX3I	CGGCCG	1 cut(s)	2455
BseYI	CCCAGC	1 cut(s)	1649
Bsh1285I	CGRYCG	1 cut(s)	2458
BshFI	GGCC	6 cut(s)	1660, 2279, 2457, 2466, 3153, 3261
BshNI	GGYRCC	2 cut(s)	1446, 1678
BsiEI	CGRYCG	1 cut(s)	2458
BsiHKCI	CYCGRG	1 cut(s)	3000
BsiSI	CCGG	3 cut(s)	1387, 2454, 2467
BslFI	GGGAC	6 cut(s)	299, 1208, 2396, 2625, 2644, 2977
BslI	CCNNNNNNNGG	8 cut(s)	679, 1763, 2020, 2891, 2918, 2966, 2981, 3227
BsmAI	GTCTC	4 cut(s)	1548, 1748, 2267, 2497
BsmFI	GGGAC	6 cut(s)	299, 1208, 2396, 2625, 2644, 2977
BsmI	GAATGC	2 cut(s)	1057, 3121
BsnI	GGCC	6 cut(s)	1660, 2279, 2457, 2466, 3153, 3261
Bso31I	GGTCTC	1 cut(s)	1748
BsoBI	CYCGRG	1 cut(s)	3000
Bsp119I	TTCGAA	2 cut(s)	1005, 2767
Bsp120I	GGGCCC	2 cut(s)	3151, 3259
Bsp1286I	GDGCHC	3 cut(s)	623, 3155, 3263
Bsp1407I	TGTACA	1 cut(s)	2200
Bsp19I	CCATGG	1 cut(s)	2626
BspACI	CCGC	8 cut(s)	67, 334, 529, 727, 1804, 2076, 2690, 3017
BspANI	GGCC	6 cut(s)	1660, 2279, 2457, 2466, 3153, 3261
BspLI	GGNNCC	7 cut(s)	1196, 1448, 1680, 2278, 3153, 3219, 3261
BspMAI	CTGCAG	2 cut(s)	982, 3010
BspMI	ACCTGC	2 cut(s)	1124, 2011
BspPI	GGATC	5 cut(s)	78, 992, 1208, 1588, 3046
BspQI	GCTCTTC	1 cut(s)	2913
BspT104I	TTCGAA	2 cut(s)	1005, 2767
BspT107I	GGYRCC	2 cut(s)	1446, 1678
BspTI	CTTAAG	2 cut(s)	509, 2243
BspTNI	GGTCTC	1 cut(s)	1748
BsrBI	CCGCTC	2 cut(s)	67, 334
BsrDI	GCAATG	3 cut(s)	2332, 2856, 3072
BsrFI	RCCGGY	1 cut(s)	2453
BsrGI	TGTACA	1 cut(s)	2200
BsrI	ACTGG	7 cut(s)	1459, 1582, 2352, 2397, 2638, 2971, 3175
BssAI	RCCGGY	1 cut(s)	2453
BssECI	CCNNGG	9 cut(s)	1166, 1686, 1731, 2015, 2626, 2960, 3189, 3209, 3343
BssNAI	GTATAC	1 cut(s)	1762
BssT1I	CCWWGG	2 cut(s)	1731, 2626
Bst1107I	GTATAC	1 cut(s)	1762
Bst4CI	ACNGT	6 cut(s)	1060, 1712, 1993, 2441, 2891, 3273
Bst6I	CTCTTC	6 cut(s)	320, 387, 404, 533, 2913, 3309
BstAFI	CTTAAG	2 cut(s)	509, 2243
BstAPI	GCANNNNNTGC	1 cut(s)	3014
BstAUI	TGTACA	1 cut(s)	2200
BstBAI	YACGTR	1 cut(s)	184
BstBI	TTCGAA	2 cut(s)	1005, 2767
BstC8I	GCNNGC	5 cut(s)	871, 1445, 2464, 2796, 3239
BstDSI	CCRYGG	1 cut(s)	2626
BstMAI	GTCTC	4 cut(s)	1548, 1748, 2267, 2497
BstMCI	CGRYCG	1 cut(s)	2458
BstSFI	CTRYAG	3 cut(s)	978, 2844, 3006
BstSLI	GKGCMC	2 cut(s)	3155, 3263
BstV2I	GAAGAC	1 cut(s)	2736
BstX2I	RGATCY	5 cut(s)	1350, 2236, 2521, 3051, 3318
BstXI	CCANNNNNNTGG	2 cut(s)	1738, 2633
BstYI	RGATCY	5 cut(s)	1350, 2236, 2521, 3051, 3318
BstZ17I	GTATAC	1 cut(s)	1762
BstZI	CGGCCG	1 cut(s)	2455
BsuRI	GGCC	6 cut(s)	1660, 2279, 2457, 2466, 3153, 3261
BtgI	CCRYGG	1 cut(s)	2626
BtsI	GCAGTG	2 cut(s)	1529, 2992
BtsIMutI	CAGTG	3 cut(s)	1529, 2359, 2992
BveI	ACCTGC	2 cut(s)	1124, 2011
Cac8I	GCNNGC	5 cut(s)	871, 1445, 2464, 2796, 3239
CaiI	CAGNNNCTG	2 cut(s)	977, 1531
Cfr10I	RCCGGY	1 cut(s)	2453
Cfr13I	GGNCC	9 cut(s)	1195, 1630, 1658, 2277, 3151, 3152, 3224, 3259, 3260
Csp6I	GTAC	6 cut(s)	181, 553, 1604, 1827, 2201, 2451
CviAII	CATG	9 cut(s)	1412, 1906, 1933, 2104, 2132, 2249, 2273, 2627, 3025
CviQI	GTAC	6 cut(s)	181, 553, 1604, 1827, 2201, 2451
DraI	TTTAAA	1 cut(s)	2656
DriI	GACNNNNNGTC	2 cut(s)	820, 2900
EaeI	YGGCCR	2 cut(s)	2455, 2464
EagI	CGGCCG	1 cut(s)	2455
Eam1104I	CTCTTC	6 cut(s)	320, 387, 404, 533, 2913, 3309
Eam1105I	GACNNNNNGTC	2 cut(s)	820, 2900
EarI	CTCTTC	6 cut(s)	320, 387, 404, 533, 2913, 3309
EciI	GGCGGA	1 cut(s)	2091
EclXI	CGGCCG	1 cut(s)	2455
Eco130I	CCWWGG	2 cut(s)	1731, 2626
Eco24I	GRGCYC	3 cut(s)	623, 3155, 3263
Eco31I	GGTCTC	1 cut(s)	1748
Eco32I	GATATC	4 cut(s)	1717, 2255, 2785, 3368
Eco47I	GGWCC	3 cut(s)	1195, 1630, 3224
Eco52I	CGGCCG	1 cut(s)	2455
Eco57I	CTGAAG	1 cut(s)	1820
Eco88I	CYCGRG	1 cut(s)	3000
EcoO109I	RGGNCCY	4 cut(s)	1195, 3152, 3259, 3260
EcoRV	GATATC	4 cut(s)	1717, 2255, 2785, 3368
EcoT14I	CCWWGG	2 cut(s)	1731, 2626
EcoT38I	GRGCYC	3 cut(s)	623, 3155, 3263
ErhI	CCWWGG	2 cut(s)	1731, 2626
FaeI	CATG	9 cut(s)	1415, 1909, 1936, 2107, 2135, 2252, 2276, 2630, 3028
FalI	AAGNNNNNCTT	2 cut(s)	3230, 3262
FaqI	GGGAC	6 cut(s)	299, 1208, 2396, 2625, 2644, 2977
FatI	CATG	9 cut(s)	1411, 1905, 1932, 2103, 2131, 2248, 2272, 2626, 3024
FauI	CCCGC	2 cut(s)	60, 1797
FblI	GTMKAC	1 cut(s)	1761
FriOI	GRGCYC	3 cut(s)	623, 3155, 3263
FspBI	CTAG	5 cut(s)	24, 2364, 2372, 2508, 3120
GsaI	CCCAGC	1 cut(s)	1653
GsuI	CTGGAG	3 cut(s)	2502, 3192, 3366
HaeIII	GGCC	6 cut(s)	1660, 2279, 2457, 2466, 3153, 3261
HapII	CCGG	3 cut(s)	1387, 2454, 2467
Hin1II	CATG	9 cut(s)	1415, 1909, 1936, 2107, 2135, 2252, 2276, 2630, 3028
HincII	GTYRAC	1 cut(s)	1291
HindII	GTYRAC	1 cut(s)	1291
HindIII	AAGCTT	1 cut(s)	1008
HpaII	CCGG	3 cut(s)	1387, 2454, 2467
HphI	GGTGA	8 cut(s)	1039, 1130, 1354, 1724, 2407, 2429, 2792, 3124
Hpy166II	GTNNAC	7 cut(s)	1291, 1762, 1796, 2304, 2437, 2894, 3168
Hpy8I	GTNNAC	7 cut(s)	1291, 1762, 1796, 2304, 2437, 2894, 3168
HpyCH4III	ACNGT	6 cut(s)	1060, 1712, 1993, 2441, 2891, 3273
HpyCH4IV	ACGT	5 cut(s)	183, 376, 894, 2449, 3146
HpySE526I	ACGT	5 cut(s)	183, 376, 894, 2449, 3146
Hsp92II	CATG	9 cut(s)	1415, 1909, 1936, 2107, 2135, 2252, 2276, 2630, 3028
LguI	GCTCTTC	1 cut(s)	2913
LmnI	GCTCC	7 cut(s)	64, 331, 514, 1690, 2383, 2521, 3173
LweI	GCATC	7 cut(s)	205, 934, 1020, 1353, 2212, 2494, 3052
MaeI	CTAG	5 cut(s)	24, 2364, 2372, 2508, 3120
MaeII	ACGT	5 cut(s)	183, 376, 894, 2449, 3146
MaeIII	GTNAC	4 cut(s)	131, 1891, 2157, 3130
MbiI	CCGCTC	2 cut(s)	67, 334
MfeI	CAATTG	3 cut(s)	1071, 1394, 2108
MflI	RGATCY	5 cut(s)	1350, 2236, 2521, 3051, 3318
MhlI	GDGCHC	3 cut(s)	623, 3155, 3263
MlyI	GAGTC	8 cut(s)	58, 136, 318, 832, 890, 1175, 2309, 2851
MmeI	TCCRAC	3 cut(s)	1549, 2425, 3072
MroXI	GAANNNNTTC	1 cut(s)	2763
MseI	TTAA	8 cut(s)	510, 758, 963, 2244, 2319, 2655, 2661, 3299
MslI	CAYNNNNRTG	4 cut(s)	477, 603, 1541, 3060
MspA1I	CMGCKG	1 cut(s)	974
MspCI	CTTAAG	2 cut(s)	509, 2243
MspI	CCGG	3 cut(s)	1387, 2454, 2467
MunI	CAATTG	3 cut(s)	1071, 1394, 2108
Mva1269I	GAATGC	2 cut(s)	1057, 3121
NcoI	CCATGG	1 cut(s)	2626
NlaIII	CATG	9 cut(s)	1415, 1909, 1936, 2107, 2135, 2252, 2276, 2630, 3028
NlaIV	GGNNCC	7 cut(s)	1196, 1448, 1680, 2278, 3153, 3219, 3261
NmeAIII	GCCGAG	1 cut(s)	1996
NmuCI	GTSAC	2 cut(s)	131, 3130
NspV	TTCGAA	2 cut(s)	1005, 2767
PciSI	GCTCTTC	1 cut(s)	2913
PcsI	WCGNNNNNNNCGW	2 cut(s)	136, 2455
PctI	GAATGC	2 cut(s)	1057, 3121
PdmI	GAANNNNTTC	1 cut(s)	2763
PfeI	GAWTC	7 cut(s)	167, 494, 647, 851, 1175, 1705, 2741
PflMI	CCANNNNNTGG	1 cut(s)	2918
PfoI	TCCNGGA	1 cut(s)	3220
PleI	GAGTC	8 cut(s)	57, 135, 317, 832, 889, 1175, 2308, 2851
PpsI	GAGTC	8 cut(s)	57, 135, 317, 832, 889, 1175, 2308, 2851
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	1195
Psp1406I	AACGTT	1 cut(s)	3146
Psp5II	RGGWCCY	1 cut(s)	1195
PspFI	CCCAGC	1 cut(s)	1649
PspN4I	GGNNCC	7 cut(s)	1196, 1448, 1680, 2278, 3153, 3219, 3261
PspOMI	GGGCCC	2 cut(s)	3151, 3259
PspPI	GGNCC	9 cut(s)	1195, 1630, 1658, 2277, 3151, 3152, 3224, 3259, 3260
PspPPI	RGGWCCY	1 cut(s)	1195
PstI	CTGCAG	2 cut(s)	982, 3010
PstNI	CAGNNNCTG	2 cut(s)	977, 1531
PsuI	RGATCY	5 cut(s)	1350, 2236, 2521, 3051, 3318
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	6 cut(s)	182, 554, 1605, 1828, 2202, 2452
RsaNI	GTAC	6 cut(s)	181, 553, 1604, 1827, 2201, 2451
RseI	CAYNNNNRTG	4 cut(s)	477, 603, 1541, 3060
SapI	GCTCTTC	1 cut(s)	2913
SaqAI	TTAA	8 cut(s)	510, 758, 963, 2244, 2319, 2655, 2661, 3299
Sau96I	GGNCC	9 cut(s)	1195, 1630, 1658, 2277, 3151, 3152, 3224, 3259, 3260
SchI	GAGTC	8 cut(s)	58, 136, 318, 832, 890, 1175, 2309, 2851
SduI	GDGCHC	3 cut(s)	623, 3155, 3263
SfaNI	GCATC	7 cut(s)	205, 934, 1020, 1353, 2212, 2494, 3052
SfcI	CTRYAG	3 cut(s)	978, 2844, 3006
SfiI	GGCCNNNNNGGCC	1 cut(s)	2463
SfuI	TTCGAA	2 cut(s)	1005, 2767
SinI	GGWCC	3 cut(s)	1195, 1630, 3224
SmiMI	CAYNNNNRTG	4 cut(s)	477, 603, 1541, 3060
SmlI	CTYRAG	5 cut(s)	509, 1199, 1354, 2143, 2243
SmoI	CTYRAG	5 cut(s)	509, 1199, 1354, 2143, 2243
SsiI	CCGC	8 cut(s)	67, 334, 529, 727, 1804, 2076, 2690, 3017
SspI	AATATT	1 cut(s)	1972
SspMI	CTAG	5 cut(s)	24, 2364, 2372, 2508, 3120
StyI	CCWWGG	2 cut(s)	1731, 2626
TaaI	ACNGT	6 cut(s)	1060, 1712, 1993, 2441, 2891, 3273
TaiI	ACGT	5 cut(s)	186, 379, 897, 2452, 3149
TatI	WGTACW	4 cut(s)	552, 1603, 1826, 2200
TauI	GCSGC	3 cut(s)	532, 2693, 3020
TfiI	GAWTC	7 cut(s)	167, 494, 647, 851, 1175, 1705, 2741
Tru1I	TTAA	8 cut(s)	510, 758, 963, 2244, 2319, 2655, 2661, 3299
Tru9I	TTAA	8 cut(s)	510, 758, 963, 2244, 2319, 2655, 2661, 3299
TscAI	CASTG	3 cut(s)	1536, 2359, 2992
TseFI	GTSAC	2 cut(s)	131, 3130
Tsp45I	GTSAC	2 cut(s)	131, 3130
TspGWI	ACGGA	3 cut(s)	715, 1310, 1779
TspRI	CASTG	3 cut(s)	1536, 2359, 2992
Van91I	CCANNNNNTGG	1 cut(s)	2918
Vha464I	CTTAAG	2 cut(s)	509, 2243
VpaK11BI	GGWCC	3 cut(s)	1195, 1630, 3224
XapI	RAATTY	4 cut(s)	1327, 2187, 2401, 2657
XmiI	GTMKAC	1 cut(s)	1761
XmnI	GAANNNNTTC	1 cut(s)	2763
XspI	CTAG	5 cut(s)	24, 2364, 2372, 2508, 3120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.