Rroxscaffold_1G00032010

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
45500450 .. 45506220
5771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032010.1

Sequence Viewer

Length: 3417 bp
ATGGAAGAGGGCAAACATAAGTCGAGGAAGGAGGGAGAATCCAAGAGGAGTCACCGAGATCGGGATCGCGAGAAGGAAAGCAATAAACAGAAACACAGGGATAAAGATAGAGATAAGAGAGACCGTGGTACTCGACGTTCTGAGAAAGAAAAGAGTTATGATTCTGAGGAAAGGTATGATAAAGAAAAGCATCGAGACAAGGACAGTGATAGGGCGCGTAGCCGAGATGATGAAAGAAAGAAAACAAGAGAAAGGAAGAGGGATAGCAATAAAGAGAAGGACAAGGAGAGGGAGGGGGAGAAAGACAAAGAAAATGAGAAGAGGGAGAGGGTTAGAGAGAAGGAAAGAGAAGGAGAAAGAGACAAGGAGAGGGAGAGGGAGAGGGAGAGAAGAGAACGAGAAAGAGAGGTTGAAGATAGGGTGAGAGAGAAGAGGGAGCATGAGAGGGAAAATGATAAAGATCGAGAGAGGAGGATAAGAGAGAGGGAGAGGCATAGGGATGCTGATACCGATGATATTGATGATCATGTTAGGGATCGTGATAGGAAGCGGCATAGGAATGATAAAAATGAGTACAAGGAGAAAGAGCGGGAGAGGAGTAGTAGTAGGGTAAAGACACATATGGATAATGGAGATGAGAGCCCACAAAAGAAAAGTGATGAAGATTCAGTTAAGAAGCCAACCCGTGAGGAGGAGTTAGAGAATGAACAAAGGAAATTGGATGAGGAAATGGAAAAACGAAGGAGGAGAGTTCAGGAGTGGCAAGAGTTAAAGAGAAAGAAGGAAGAAGATGAGAGAGATCATGGGGAAGGGCATGCTGATGAACCTATGTCCAGAAAGACCTGGACTCTTGAAGGAGAATCTGATGACGAAGAAGTTCATCCCTCAGGGACATCAGAGCCAGGTACAAACCTCAATGGAGAAGGCAATCTTATTGACAAAGAAGATGGAAATTTCATGGTAGATTCTGACAACGAAACAGCTGCACTTGCTTTACCAAATGGAGCTGATAACGCTAGCGGGGATGAGGAGACTGATCCATTAGATGCTTTTATGAATTCTATGGTATTGCCTGAAGTTGAAAAGCTGGACAGTGCTGCAGACACATCAATTTCTGATGCGAAGAACGATAAAAAGGATGGTCGAAGTAATGGTGAACAGCAGAGGAGAGGTTTTAATAAATCTATGGGAAGAATTATTCCTGGGGAGGATTCGGATTCCGATTTTGGGGACCTTGAGAATGATGACAATGTTTTAGAAGATGAAAATGATGACGAGTTCATCAAAAGGGTGAAAAAAACAAAAGCTGAGAAACTTTCTTTAGTTGATCACTCTAAGATAGATTATGAACCATTCCGCAAAAATTTTTATATTGAGGTGAAGGAGATCTCAAGGATGAGTCCAGAAGAGGTGGGTGCATGCCGGAAACAATTGGAATTGAAGATACACGGTAAGGATGTGCCGAAGCCCATTAAGACCTGGCATCAAACAGGACTTACCAGTAAAATTTTGGAAATAATAAAGAAACTGAACTTTGAAAAGCCTATGCCAATTCAGGCTCAGGCATTACCTGTAGTTATGAGTGGTCGAGACTGCATCGGCGTTGGGAAAACTGGATCAGGGAAAACCCTTGCATTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCCGTAGAAGCTGGAGATGGGCCTATTGGGCTTATAATGGCTCCAACGAGGGAACTTGTTCAGCAGATCCACAGCGATATTAAAAGGTTTGCCAAGGTACTGGGTCTCAGGTGTGTGCCTGTATATGGAGGTTCTGGTGTTGCTCAACAGATTAGTGAATTAAAGCGGGGTGCTGAAATTGTTGTATGCACCCCTGGTAGGATGATTGACATACTTTGCACAAGTGGAGGGAAAATAACAAATCTGCGTAGAGTAACTTTTTTGGTCATGGATGAAGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACTAGAATTGTTCAAAATATTCGGCCAAGCCGTCAAACTGTTTTGTTTTCAGCCACTTTCCCTCGCCAGGTTGAAGTCTTGGCGCGTAAAGTGTTGGACAAACCTGTGGAAATACAGGTTGGTGGCAGGAGTGTTGTGAATAAGGACATAATGCAAATGGTTGAAATGAGGCAGGAAAATGAAAGATTCCTGAGATTGTTAGAGTTGCTCGGTGAATGGAATGAGAAAGGTAAGATTTTGATATTTGTTCAGTCCCAGGACAAATGTGATGCTTTGTTCCGGGATCTGCTTAGGCATGGATATGCTTGTCTCTCACTTCATGGGGCCAAAGATCAAACAGATCGTGAGTCCACAATATCTGATTTTAAGAGTGATGTTTGTAATTTGTTGATTGCAACAAGTGTTGCTGCCAGAGGATTAGATGTCAAGGAGCTTGAACTAGTGATCAACTTTCATGTCCCAAATCATTACGAGGACTATGTACACCGTGTTGGACGTACAGGCCGAGCTGGCCGGAAAGGATGTGCTATAACGTTTATCTCTGAGGAAGATGCTAGATATGCTCCAGATCTTGTTAAAGCATTGGAACTTTCTGAGCAAGTTGTTCCGGATGACCTGAAATCTCTTGCTGATAATTTCATGGCAAAAGTAACTCAGGGACTCGAGCAAGCCCATGGAACTGGTTATGGAGGAAGTGGTTTTAAATTTAATGAGGAGGAAGATGAAGTGAGGAGAGCAGCAAAGAAAGCTCAGGCTAAAGAATATGGTTTTGAGGATGACAAGTCTGATTCAGAAGATGACGATGAAGGTATCCGAAAGGCAGGGGGCGACATCTCTCAGCAGGCTGCCCTTGCTCAGATAGCAGCTATTACTGCTGCCTCCAAAGCTAGTACAGCCTCAATGCAGACCCCTGCCTCTGCTGCCCAACCGCTTCCCAACGGTGGACTGTCTGTTTCTCTTCCAGGTGTCCTTGGTCAAGCATTACCAGGAACAGCATCAGTTTTCCCTGGGACTGGTTTGCCTCTTGCTAGCAATGATGGGGCAGCTCGGGCTGCTGCGATTGCTGCAGCCATGAACTTGCAGCATAACCTGGCAAAGATTCAAGCTGATGCAATGCCTGAACATTATGAAGCAGAGTTAGAGATAAATGATTTTCCTCAGAATGCTAGATGGAAGGTTACCCACAAGGAAACTTGGGGTGCCATATCAGATTGGACTGGAGCGGCCATCACCACCAGGGGTCAGTATTTCCCACCTGGGAAGGTTGCAGGACCTGGAGATCGCAAGCTCTACTTGTTTATCGAGGGCCCTACTGAACAGTCTGTCAAGAGAGCTAAATCGGAGTTAAAGCGGGTTTTGGAAGACATCTCAAATCATGCATTCTCACTTCCTGGTGGAGCTCAGCAAGGCAGATATCAAGTTATATAA

Protein Analysis

1138

Amino Acids

129.34

Weight (kDa)

5.85

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 517 - 688 4e-49 DEAD/DEAH box helicase
Helicase_C PF00271 727 - 834 1.6e-28 Helicase conserved C-terminal domain
KH_12 PF23469 1040 - 1117 1.2e-14 KH-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1709
AccB1I GGYRCC 1 cut(s) 3188
AccBSI CCGCTC 2 cut(s) 589, 3212
AccII CGCG 3 cut(s) 69, 217, 2074
AccIII TCCGGA 1 cut(s) 2596
AciI CCGC 8 cut(s) 550, 589, 1020, 1357, 1840, 2918, 3212, 3340
AclI AACGTT 1 cut(s) 2522
AclWI GGATC 7 cut(s) 72, 543, 1031, 1624, 1674, 1735, 2280
AcoI YGGCCR 3 cut(s) 2012, 2500, 3213
AcsI RAATTY 5 cut(s) 952, 1057, 1363, 1506, 2693
AcuI CTGAAG 1 cut(s) 1095
AfaI GTAC 7 cut(s) 130, 575, 907, 1773, 2472, 2488, 2881
AfiI CCNNNNNNNGG 8 cut(s) 61, 691, 1227, 1799, 1872, 2056, 2930, 3002
AhlI ACTAGT 1 cut(s) 2428
AjuI GAANNNNNNNTTGG 2 cut(s) 2091, 2123
Alw21I GWGCWC 1 cut(s) 3391
Alw26I GTCTC 7 cut(s) 114, 189, 354, 1025, 1584, 1784, 2303
AlwI GGATC 7 cut(s) 72, 543, 1031, 1624, 1674, 1735, 2280
AlwNI CAGNNNCTG 1 cut(s) 3263
Ama87I CYCGRG 2 cut(s) 2651, 3036
Aor13HI TCCGGA 1 cut(s) 2596
AoxI GGCC 7 cut(s) 1694, 2012, 2313, 2491, 2500, 3213, 3295
ApaI GGGCCC 1 cut(s) 3299
ApoI RAATTY 5 cut(s) 952, 1057, 1363, 1506, 2693
ArsI GACNNNNNNTTYG 2 cut(s) 1958, 1990
Asp700I GAANNNNTTC 2 cut(s) 876, 1731
AspLEI GCGC 2 cut(s) 217, 2074
AspS9I GGNCC 6 cut(s) 1231, 1694, 2313, 3260, 3295, 3296
AsuC2I CCSGG 1 cut(s) 2270
AsuHPI GGTGA 7 cut(s) 44, 433, 1166, 1303, 1390, 2213, 3211
AsuNHI GCTAGC 2 cut(s) 1016, 3017
AvaI CYCGRG 2 cut(s) 2651, 3036
AvaII GGWCC 2 cut(s) 1231, 3260
AxyI CCTNAGG 1 cut(s) 886
BaeGI GKGCMC 1 cut(s) 3299
BanI GGYRCC 1 cut(s) 3188
BanII GRGCYC 3 cut(s) 644, 3299, 3391
BbsI GAAGAC 1 cut(s) 3357
Bbv12I GWGCWC 1 cut(s) 3391
BbvCI CCTCAGC 1 cut(s) 1652
BccI CCATC 6 cut(s) 941, 1133, 1685, 3020, 3153, 3224
BceAI ACGGC 1 cut(s) 2004
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciVI GTATCC 1 cut(s) 2810
BclI TGATCA 3 cut(s) 523, 1327, 2433
BcnI CCSGG 1 cut(s) 2270
BcoDI GTCTC 7 cut(s) 114, 189, 354, 1025, 1584, 1784, 2303
BcuI ACTAGT 1 cut(s) 2428
BfaI CTAG 7 cut(s) 1017, 1992, 2429, 2544, 2877, 3018, 3156
BfmI CTRYAG 3 cut(s) 1098, 1572, 3054
BfuI GTATCC 1 cut(s) 2810
BglI GCCNNNNNGGC 2 cut(s) 1702, 2499
BglII AGATCT 2 cut(s) 1386, 2557
BlpI GCTNAGC 1 cut(s) 3390
Bme18I GGWCC 2 cut(s) 1231, 3260
BmeT110I CYCGRG 2 cut(s) 2651, 3036
BmgT120I GGNCC 6 cut(s) 1231, 1694, 2313, 3260, 3295, 3296
BmiI GGNNCC 5 cut(s) 1232, 1716, 2314, 3190, 3297
BmrI ACTGGG 1 cut(s) 1784
BmtI GCTAGC 2 cut(s) 1020, 3021
BmuI ACTGGG 1 cut(s) 1784
BpiI GAAGAC 1 cut(s) 3357
BpmI CTGGAG 4 cut(s) 1707, 2538, 3228, 3285
Bpu10I CCTNAGC 4 cut(s) 1560, 1652, 2279, 2739
Bpu1102I GCTNAGC 1 cut(s) 3390
BpuEI CTTGAG 2 cut(s) 1256, 1375
BpuMI CCSGG 1 cut(s) 2270
BsaBI GATNNNNATC 2 cut(s) 63, 459
BsaI GGTCTC 2 cut(s) 114, 1784
BsaWI WCCGGW 1 cut(s) 2596
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 8 cut(s) 61, 691, 1227, 1799, 1872, 2056, 2930, 3002
Bse1I ACTGG 6 cut(s) 1500, 1618, 1779, 2674, 3007, 3211
Bse21I CCTNAGG 1 cut(s) 886
Bse3DI GCAATG 2 cut(s) 3028, 3108
Bse8I GATNNNNATC 2 cut(s) 63, 459
BseAI TCCGGA 1 cut(s) 2596
BseJI GATNNNNATC 2 cut(s) 63, 459
BseLI CCNNNNNNNGG 8 cut(s) 61, 691, 1227, 1799, 1872, 2056, 2930, 3002
BseMI GCAATG 2 cut(s) 3028, 3108
BseNI ACTGG 6 cut(s) 1500, 1618, 1779, 2674, 3007, 3211
BseSI GKGCMC 1 cut(s) 3299
BsgI GTGCAG 1 cut(s) 969
Bsh1236I CGCG 3 cut(s) 69, 217, 2074
BshFI GGCC 7 cut(s) 1696, 2014, 2315, 2493, 2502, 3215, 3297
BshNI GGYRCC 1 cut(s) 3188
BsiHKAI GWGCWC 1 cut(s) 3391
BsiHKCI CYCGRG 2 cut(s) 2651, 3036
BsiSI CCGG 4 cut(s) 1423, 2269, 2503, 2597
BslFI GGGAC 6 cut(s) 904, 1244, 2227, 2432, 2661, 3013
BslI CCNNNNNNNGG 8 cut(s) 61, 691, 1227, 1799, 1872, 2056, 2930, 3002
BsmAI GTCTC 7 cut(s) 114, 189, 354, 1025, 1584, 1784, 2303
BsmFI GGGAC 6 cut(s) 904, 1244, 2227, 2432, 2661, 3013
BsmI GAATGC 2 cut(s) 3157, 3368
BsnI GGCC 7 cut(s) 1696, 2014, 2315, 2493, 2502, 3215, 3297
Bso31I GGTCTC 2 cut(s) 114, 1784
BsoBI CYCGRG 2 cut(s) 2651, 3036
Bsp120I GGGCCC 1 cut(s) 3295
Bsp1286I GDGCHC 3 cut(s) 644, 3299, 3391
Bsp13I TCCGGA 1 cut(s) 2596
Bsp1407I TGTACA 1 cut(s) 2470
Bsp1720I GCTNAGC 1 cut(s) 3390
Bsp19I CCATGG 1 cut(s) 2662
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 8 cut(s) 550, 589, 1020, 1357, 1840, 2918, 3212, 3340
BspANI GGCC 7 cut(s) 1696, 2014, 2315, 2493, 2502, 3215, 3297
BspEI TCCGGA 1 cut(s) 2596
BspFNI CGCG 3 cut(s) 69, 217, 2074
BspLI GGNNCC 5 cut(s) 1232, 1716, 2314, 3190, 3297
BspMAI CTGCAG 2 cut(s) 1102, 3058
BspOI GCTAGC 2 cut(s) 1020, 3021
BspPI GGATC 7 cut(s) 72, 543, 1031, 1624, 1674, 1735, 2280
BspT107I GGYRCC 1 cut(s) 3188
BspTNI GGTCTC 2 cut(s) 114, 1784
BsrBI CCGCTC 2 cut(s) 589, 3212
BsrDI GCAATG 2 cut(s) 3028, 3108
BsrGI TGTACA 1 cut(s) 2470
BsrI ACTGG 6 cut(s) 1500, 1618, 1779, 2674, 3007, 3211
BssT1I CCWWGG 3 cut(s) 1767, 2662, 2959
Bst4CI ACNGT 9 cut(s) 125, 206, 1094, 1451, 2029, 2477, 2930, 2937, 3309
Bst6I CTCTTC 6 cut(s) 251, 314, 385, 425, 1401, 2952
BstAUI TGTACA 1 cut(s) 2470
BstC8I GCNNGC 8 cut(s) 816, 1018, 1420, 2500, 2658, 2832, 3019, 3275
BstDSI CCRYGG 2 cut(s) 124, 2662
BstEII GGTNACC 1 cut(s) 3166
BstFNI CGCG 3 cut(s) 69, 217, 2074
BstHHI GCGC 2 cut(s) 217, 2074
BstMAI GTCTC 7 cut(s) 114, 189, 354, 1025, 1584, 1784, 2303
BstNSI RCATGY 2 cut(s) 818, 1422
BstPI GGTNACC 1 cut(s) 3166
BstSFI CTRYAG 3 cut(s) 1098, 1572, 3054
BstSLI GKGCMC 1 cut(s) 3299
BstUI CGCG 3 cut(s) 69, 217, 2074
BstV2I GAAGAC 1 cut(s) 3357
BstX2I RGATCY 4 cut(s) 1386, 1740, 2272, 2557
BstXI CCANNNNNNTGG 2 cut(s) 1774, 2669
BstYI RGATCY 4 cut(s) 1386, 1740, 2272, 2557
Bsu36I CCTNAGG 1 cut(s) 886
BsuI GTATCC 1 cut(s) 2810
BsuRI GGCC 7 cut(s) 1696, 2014, 2315, 2493, 2502, 3215, 3297
BtgI CCRYGG 2 cut(s) 124, 2662
BtsIMutI CAGTG 2 cut(s) 211, 1099
BtuMI TCGCGA 1 cut(s) 69
Cac8I GCNNGC 8 cut(s) 816, 1018, 1420, 2500, 2658, 2832, 3019, 3275
CaiI CAGNNNCTG 1 cut(s) 3263
CfoI GCGC 2 cut(s) 217, 2074
Cfr13I GGNCC 6 cut(s) 1231, 1694, 2313, 3260, 3295, 3296
Csp6I GTAC 7 cut(s) 129, 574, 906, 1772, 2471, 2487, 2880
CviQI GTAC 7 cut(s) 129, 574, 906, 1772, 2471, 2487, 2880
DraI TTTAAA 1 cut(s) 2692
EaeI YGGCCR 3 cut(s) 2012, 2500, 3213
Eam1104I CTCTTC 6 cut(s) 251, 314, 385, 425, 1401, 2952
EarI CTCTTC 6 cut(s) 251, 314, 385, 425, 1401, 2952
Ecl136II GAGCTC 1 cut(s) 3389
Eco130I CCWWGG 3 cut(s) 1767, 2662, 2959
Eco24I GRGCYC 3 cut(s) 644, 3299, 3391
Eco31I GGTCTC 2 cut(s) 114, 1784
Eco32I GATATC 1 cut(s) 3404
Eco47I GGWCC 2 cut(s) 1231, 3260
Eco53kI GAGCTC 1 cut(s) 3389
Eco57I CTGAAG 1 cut(s) 1095
Eco81I CCTNAGG 1 cut(s) 886
Eco88I CYCGRG 2 cut(s) 2651, 3036
Eco91I GGTNACC 1 cut(s) 3166
EcoICRI GAGCTC 1 cut(s) 3389
EcoO109I RGGNCCY 4 cut(s) 1231, 3260, 3295, 3296
EcoO65I GGTNACC 1 cut(s) 3166
EcoRI GAATTC 1 cut(s) 1057
EcoRV GATATC 1 cut(s) 3404
EcoT14I CCWWGG 3 cut(s) 1767, 2662, 2959
EcoT22I ATGCAT 1 cut(s) 3370
EcoT38I GRGCYC 3 cut(s) 644, 3299, 3391
ErhI CCWWGG 3 cut(s) 1767, 2662, 2959
FalI AAGNNNNNCTT 4 cut(s) 915, 947, 3266, 3298
FaqI GGGAC 6 cut(s) 904, 1244, 2227, 2432, 2661, 3013
FauI CCCGC 4 cut(s) 582, 1013, 1833, 3333
FauNDI CATATG 1 cut(s) 621
FbaI TGATCA 3 cut(s) 523, 1327, 2433
FriOI GRGCYC 3 cut(s) 644, 3299, 3391
FspBI CTAG 7 cut(s) 1017, 1992, 2429, 2544, 2877, 3018, 3156
GlaI GCGC 2 cut(s) 216, 2073
GsuI CTGGAG 4 cut(s) 1707, 2538, 3228, 3285
HaeIII GGCC 7 cut(s) 1696, 2014, 2315, 2493, 2502, 3215, 3297
HapII CCGG 4 cut(s) 1423, 2269, 2503, 2597
HhaI GCGC 2 cut(s) 217, 2074
Hin6I GCGC 2 cut(s) 215, 2072
HinP1I GCGC 2 cut(s) 215, 2072
HpaII CCGG 4 cut(s) 1423, 2269, 2503, 2597
HphI GGTGA 7 cut(s) 44, 433, 1166, 1303, 1390, 2213, 3211
Hpy166II GTNNAC 4 cut(s) 1157, 2340, 2473, 2933
Hpy8I GTNNAC 4 cut(s) 1157, 2340, 2473, 2933
Hpy99I CGWCG 1 cut(s) 138
HpyCH4III ACNGT 9 cut(s) 125, 206, 1094, 1451, 2029, 2477, 2930, 2937, 3309
HpyCH4IV ACGT 3 cut(s) 136, 2485, 2522
HpySE526I ACGT 3 cut(s) 136, 2485, 2522
HspAI GCGC 2 cut(s) 215, 2072
Kpn2I TCCGGA 1 cut(s) 2596
Ksp22I TGATCA 3 cut(s) 523, 1327, 2433
LmnI GCTCC 7 cut(s) 436, 1004, 1720, 2419, 2557, 3209, 3386
MaeI CTAG 7 cut(s) 1017, 1992, 2429, 2544, 2877, 3018, 3156
MaeII ACGT 3 cut(s) 136, 2485, 2522
MaeIII GTNAC 4 cut(s) 50, 1927, 2638, 3166
MbiI CCGCTC 2 cut(s) 589, 3212
MfeI CAATTG 1 cut(s) 1430
MflI RGATCY 4 cut(s) 1386, 1740, 2272, 2557
MhlI GDGCHC 3 cut(s) 644, 3299, 3391
MlyI GAGTC 5 cut(s) 58, 841, 1408, 2345, 2643
MmeI TCCRAC 3 cut(s) 1742, 2064, 2461
Mph1103I ATGCAT 1 cut(s) 3370
MroI TCCGGA 1 cut(s) 2596
MroXI GAANNNNTTC 2 cut(s) 876, 1731
MslI CAYNNNNRTG 4 cut(s) 498, 558, 819, 2289
MspA1I CMGCKG 1 cut(s) 983
MspI CCGG 4 cut(s) 1423, 2269, 2503, 2597
MunI CAATTG 1 cut(s) 1430
Mva1269I GAATGC 2 cut(s) 3157, 3368
MvnI CGCG 3 cut(s) 69, 217, 2074
NciI CCSGG 1 cut(s) 2270
NcoI CCATGG 1 cut(s) 2662
NdeI CATATG 1 cut(s) 621
NheI GCTAGC 2 cut(s) 1016, 3017
NlaIV GGNNCC 5 cut(s) 1232, 1716, 2314, 3190, 3297
NmeAIII GCCGAG 2 cut(s) 248, 2519
NmuCI GTSAC 1 cut(s) 50
NruI TCGCGA 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 3370
NspI RCATGY 2 cut(s) 818, 1422
PaeI GCATGC 2 cut(s) 818, 1422
PaeR7I CTCGAG 1 cut(s) 2651
PasI CCCWGGG 1 cut(s) 2996
PcsI WCGNNNNNNNCGW 2 cut(s) 2017, 2491
PctI GAATGC 2 cut(s) 3157, 3368
PdmI GAANNNNTTC 2 cut(s) 876, 1731
PfoI TCCNGGA 1 cut(s) 2268
PleI GAGTC 5 cut(s) 57, 841, 1407, 2344, 2643
PpsI GAGTC 5 cut(s) 57, 841, 1407, 2344, 2643
PpuMI RGGWCCY 2 cut(s) 1231, 3260
PsiI TTATAA 1 cut(s) 1709
Psp124BI GAGCTC 1 cut(s) 3391
Psp1406I AACGTT 1 cut(s) 2522
Psp5II RGGWCCY 2 cut(s) 1231, 3260
PspEI GGTNACC 1 cut(s) 3166
PspN4I GGNNCC 5 cut(s) 1232, 1716, 2314, 3190, 3297
PspOMI GGGCCC 1 cut(s) 3295
PspPI GGNCC 6 cut(s) 1231, 1694, 2313, 3260, 3295, 3296
PspPPI RGGWCCY 2 cut(s) 1231, 3260
PspXI VCTCGAGB 1 cut(s) 2651
PsrI GAACNNNNNNTAC 2 cut(s) 121, 153
PstI CTGCAG 2 cut(s) 1102, 3058
PstNI CAGNNNCTG 1 cut(s) 3263
PsuI RGATCY 4 cut(s) 1386, 1740, 2272, 2557
PvuII CAGCTG 1 cut(s) 983
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 7 cut(s) 130, 575, 907, 1773, 2472, 2488, 2881
RsaNI GTAC 7 cut(s) 129, 574, 906, 1772, 2471, 2487, 2880
RseI CAYNNNNRTG 4 cut(s) 498, 558, 819, 2289
SacI GAGCTC 1 cut(s) 3391
Sau96I GGNCC 6 cut(s) 1231, 1694, 2313, 3260, 3295, 3296
SchI GAGTC 5 cut(s) 58, 841, 1408, 2345, 2643
SduI GDGCHC 3 cut(s) 644, 3299, 3391
SfcI CTRYAG 3 cut(s) 1098, 1572, 3054
SfiI GGCCNNNNNGGCC 1 cut(s) 2499
Sfr274I CTCGAG 1 cut(s) 2651
SinI GGWCC 2 cut(s) 1231, 3260
SlaI CTCGAG 1 cut(s) 2651
SmiMI CAYNNNNRTG 4 cut(s) 498, 558, 819, 2289
SmlI CTYRAG 3 cut(s) 1235, 1390, 2651
SmoI CTYRAG 3 cut(s) 1235, 1390, 2651
SpeI ACTAGT 1 cut(s) 2428
SphI GCATGC 2 cut(s) 818, 1422
SsiI CCGC 8 cut(s) 550, 589, 1020, 1357, 1840, 2918, 3212, 3340
SspI AATATT 1 cut(s) 2008
SspMI CTAG 7 cut(s) 1017, 1992, 2429, 2544, 2877, 3018, 3156
SstI GAGCTC 1 cut(s) 3391
StyI CCWWGG 3 cut(s) 1767, 2662, 2959
TaaI ACNGT 9 cut(s) 125, 206, 1094, 1451, 2029, 2477, 2930, 2937, 3309
TaiI ACGT 3 cut(s) 139, 2488, 2525
TaqI TCGA 9 cut(s) 23, 133, 193, 463, 1144, 1588, 1957, 2652, 3291
TatI WGTACW 3 cut(s) 573, 2470, 2879
TauI GCSGC 2 cut(s) 553, 3215
TscAI CASTG 2 cut(s) 211, 1099
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspRI CASTG 2 cut(s) 211, 1099
VpaK11BI GGWCC 2 cut(s) 1231, 3260
XapI RAATTY 5 cut(s) 952, 1057, 1363, 1506, 2693
XceI RCATGY 2 cut(s) 818, 1422
XcmI CCANNNNNNNNNTGG 1 cut(s) 1507
XhoI CTCGAG 1 cut(s) 2651
XmnI GAANNNNTTC 2 cut(s) 876, 1731
XspI CTAG 7 cut(s) 1017, 1992, 2429, 2544, 2877, 3018, 3156
Zsp2I ATGCAT 1 cut(s) 3370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.