Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000906

Physical Location & Seq

Genomic Coordinates Reverse (-)

35053699 .. 35060620

Gene Structure 6922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3375 bp

ATGGAAGAGAGTAAACATAAATCTAGGAAGGAAGGGGAAACTAAGAGGAGTCATCGAGATCGGGATCGGGATCGTGAGAAGGAGAAGAAAGTAGATAGACATAGAGAAAAAGATAGAGGAGATAAGAGTCGTGACAGCCGACGATATGAGCGAGAAAAGAGTTCTGATTCTGAGGAGAGGTACGTGAGAGAGAAGCATCGAGATAAGGAGGTTGATAGCATACGAAGCAGAGATGATGAACGAGAGAGAAGCAAAGATAGGAAAAGGGATAAAGATAAAGAGAGGGACAAGGAGAGGGAGAGGGAGAAAGTCAAAGAAAAGGAGAAGAGGGAGCGGAAGGAGAGGGAAAGAGAAAAAGAGAGGGAGAGAAGGGAACGTGAAAGGGAGGCAGAAGAGAGGGCGAGGGAGAAGAGGGAGAGGGAAAAGGAAAAAGATCGAGAGAGGAGGATAAGGGAGAGGGAGAGGCATAGGGATGTTGATACTGATGATTCTGGGGATGATCATAGGGAGCGTGGTAGGAAGCGGCAGAAGAAGAGTGATAGCGAGTACAAGGAGAGAGATCGGGAAAGGAGTATTAGTAGGTCAAACAGACATAGGGATGATGGAATTGAGAGCCCAAGAAAGAGGAGTGTTGAAGATGATTCAGATAAAAAGGAGAAGCCAACCCGTGAGGAGGAGTTAGAGGACGAACAACGGAAATTGGATGAGGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGTTAAAGAGAAAGAAGGAAGAAGATGAGAGAGAGAAGCGTGGGGAAGATAATGTTGATGACACCAAGTCTGGTAAGACCTGGACTCTTGATGGAGAATCTGATGACGAAGAAGCAGGCAAATCAGAGACAGGTATGGACGTTGATAGGGAGGTCAATGGGGATGATCTTACTGATGGAGAAGTTGTAGATGCCATCGTGCCAGATATTAATACAACAGATGCTGCAGGGAATGAGGAAGTTGATCCATTAGAAGCTTTTATGCAATCTGTGGTGATGCCCGAAGTTGCTAAGCTGAATGCTACTGTGAAACCCTCAATTGTTGATGACAAGAACAAGGATAAAAAGGTTGATACAAGTAATGGTGAAAAGCTGAGGGCAGGTTCAAATAAATCTATTGGCAGAATAATTCCTGGGGAGGATTCTGACTCGGATTACGGGGACCTGGAGAATGATGACGATCCTTTAGAAAATGAAGATGATGATGAGTTCATAAAAAGGGTGAAAAAGACGAAAGCTGAGAAACTTTCCTTAGTTGACCACTCCAAGATAGATTATATACCATTCCGTAAAAATTTTTATATCGAGGTGAAGGAGATCTCAAGGATGACGCCAGATGAGGTTGGTGCATACCGGAAACAATTGGAATTGAAGATACATGGTAAGGATGTGCCAAAGCCCATAAAGAGCTGGCACCAAACTGGACTTACAAGTAAAATCTTGGATATAATAAAGAAGCTCAACTATGAAAAGCCAATGCCAATTCAAGCTCAGGCACTGCCCATAATTATGAGTGGTCGAGACTGCATTGGCGTTGGAAAAACTGGATCAGGCAAAACCCTTGCATTTGTACTGCCAATGCTGAGGCATATCAAGGACCAGCCACCTGTGGTAGCTGGGGATGGGCCTATTGGGCTTATTATGGCACCAACCAGGGAGCTTGTTCAGCAGATTCACAGTGATATCAAAAAGTTTGCCAAGGTTCTGGGTCTCAGGTGTGTGCCTGTATACGGAGGTTCAGGTGTTGCACAACAAATTAGTGAACTGAAGCGGGGTGCTGAAATTGTTGTCTGTACTCCTGGTAGGATGATTGACATACTTTGCACAAGTGGAGGAAAAATTACAAATCTGCGTAGAGTAACTTATTTGGTCATGGATGAAGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACTCGAATTGTTCAAAATATTCGTCCAGATCGCCAAACTGTATTATTTTCTGCCACTTTCCCTCGGCAGGTTGAAGTTTTGGCTCGTAAAGTCTTAGATAAACCTGTGGAAATACAAGTTGGCGGAAGGAGTGTTGTGAATAAGGACATCATGCAATTGGTCGAAGTGAGGCAGGAACATGAAAGGTTCTTGAGATTGTTAGAGTTACTTGGAGAATGGTATGAAAAAGGAAAAATTTTGATATTTGTACAATCGCAGGACAATTGTGATGCTTTATTTAGAGATCTGCTTAAGCATGGATATCCTTGTCTCTCACTTCATGGGGCCAAAGATCAAACAGATCGTGAGTCCACCATAGCTGATTTTAAGAGCAATGTTTGTAATTTGTTGATTGCAACCAGTGTTGCTGCTAGAGGGCTAGATGTCAAGGAGCTTGAACTGGTGATAAATTTTGATGTCCCAAATCACTATGAGGACTATGTTCACCGTGTTGGACGTACTGGCCGTGCTGGCCGGAAAGGCTGTGCTATAACTTTTGTCTCTGAGGAAGATGCTAGATATGCTCCAGATCTTGTGAAAGCATTGGAACTTTCTGAGCAAGTTGTTCCAGATGACTTGAAATCTCTTGCTGATAATTTTATGTCAAAAGTAAATCAGGGACTTGCACAAGCCCATGGGACTGGTTATGGGGGAAGTGGCTTTAAATTTAATGTAGAGGAAGATGAAGTAAGGAGAGCGGCAAAGAAAGCACAGGCCAAAGAATATGGTTTTGAGGAAGACAAATCAGATTCAGAAGATGAAGATGAAGGTATTCGAAAAGCAGGGGGTGATATCTCTCAGCAGGCTGCTCTTGCTCAGATAGCTGCTATTGCTGCTGCCTCCAAAGCTACTACAGCAATGCAGACTCCTGCTTCTGCTGCCCAACTGCTTCCCAACGGTGGACTGCCTGTCGCTCTTCCAGGCGTCGGTGGTGTAGGTGCATTACCAGGAACAGCAGCAGTTGTGCCTGGGACTGGTCTGCCTCTTGTTGGCAGTGATGGGGCAGCTCGGGCTGCAGCACTTGCGGCTGCCATGAACTTACAGCATAACCTGGCAAAGATCCACGCTGATGCAATGCCTGAACACTATGAAGCAGAGTTGGAGATAAATGATTTTCCCCAGAATGCTAGATGGAAAGTCACCCACAAGGAAACGTTGGGCCCTATATCAGAGTGGACTGGAGCTGCTATTACTACCAGGGGTCAGTATTTCCCACCAGGGAAGGTTCCAGGACCAGGAGATCGCAAGCTGTACTTGTTTATTGAGGGCCCTACCGAACAGTCTGTCAAGAGAGCTAAAGCAGAATTAAAAGGTGTTTTGGAAGAGATCTCAAATCAGGCATTATCACTCCCTGGAGGAAATCAGCAAGGCAGATATCAAGTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

1124

Amino Acids

127.56

Weight (kDa)

6.05

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	503 - 674	1.6e-49	DEAD/DEAH box helicase
Helicase_C	PF00271	714 - 820	2.5e-29	Helicase conserved C-terminal domain
KH_12	PF23469	1026 - 1102	4.6e-14	KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT3G09620 AT3G09620
fragaria_vesca	FvH4_3g27090 FvH4_4g11730 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270
malus_domestica	MD06G1002800.v1.1 MD09G1086200.v1.1
prunus_persica	Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1
pyrus_communis	pycom06g00290 pycom09g01160
rosa_chinensis	RchiOBHm_Chr5g0049651 RchiOBHm_Chr7g0217001
rosa_laevigata	RLG00000002515 RLG00000034630
rosa_multiflora	Rmu_co8441089.1_g000001 Rmu_sc0001725.1_g000004 Rmu_sc0002114.1_g000002 Rmu_sc0013777.1_g000004 Rmu_sc0013777.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032010 Rroxscaffold_3G00242640
rosa_rugosa	Rorug05G0249600 Rorug05G0249700 Rorug05G0249800 Rorug05G0249900 Rorug05G0250000 Rorug05G0250100 Rorug05G0250200 Rorug07G0164800 Rorug07G0164900 Rorug07G0165000 Rorug07G0165100 Rorug07G0165200 Rorug07G0165300 Rorug07G0165400.1 Rorug07G0165500.1 Rorug07G0165600
rosa_samantha	Rh5AG326000 Rh5BG337300 Rh5CG362000 Rh5DG349500 Rh7AG305000 Rh7BG296500 Rh7CG324100 Rh7DG305100
rosa_wichuraiana	Rw5G030810 Rw7G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1118, 2005
AccB1I	GGYRCC	2 cut(s)	1440, 1672
AccBSI	CCGCTC	2 cut(s)	334, 2684
AccI	GTMKAC	1 cut(s)	1755
AciI	CCGC	7 cut(s)	334, 523, 721, 1798, 2070, 2684, 3011
AclI	AACGTT	1 cut(s)	3140
AclWI	GGATC	6 cut(s)	72, 78, 986, 1202, 1582, 3040
AcoI	YGGCCR	2 cut(s)	2449, 2458
AcsI	RAATTY	4 cut(s)	1321, 2181, 2395, 2651
AcuI	CTGAAG	1 cut(s)	1814
AcyI	GRCGYC	2 cut(s)	1358, 2910
AfaI	GTAC	7 cut(s)	182, 548, 1599, 1822, 2196, 2446, 3239
AfiI	CCNNNNNNNGG	8 cut(s)	673, 1757, 2014, 2885, 2912, 2960, 2975, 3221
AflII	CTTAAG	1 cut(s)	2237
AhdI	GACNNNNNGTC	2 cut(s)	814, 2894
AjuI	GAANNNNNNNTTGG	2 cut(s)	2049, 2081
Alw26I	GTCTC	5 cut(s)	869, 1542, 1742, 2261, 2491
AlwI	GGATC	6 cut(s)	72, 78, 986, 1202, 1582, 3040
AlwNI	CAGNNNCTG	2 cut(s)	971, 1525
Ama87I	CYCGRG	1 cut(s)	2994
AoxI	GGCC	7 cut(s)	1652, 2271, 2449, 2458, 2700, 3145, 3253
ApaI	GGGCCC	2 cut(s)	3149, 3257
ApoI	RAATTY	4 cut(s)	1321, 2181, 2395, 2651
ArsI	GACNNNNNNTTYG	6 cut(s)	1916, 1948, 1954, 1986, 3255, 3287
AseI	ATTAAT	1 cut(s)	957
Asp700I	GAANNNNTTC	1 cut(s)	2757
AspS9I	GGNCC	9 cut(s)	1189, 1624, 1652, 2271, 3145, 3146, 3218, 3253, 3254
AsuHPI	GGTGA	8 cut(s)	1033, 1124, 1261, 1348, 2401, 2423, 2786, 3118
AsuII	TTCGAA	1 cut(s)	2761
AvaI	CYCGRG	1 cut(s)	2994
AvaII	GGWCC	3 cut(s)	1189, 1624, 3218
BaeGI	GKGCMC	2 cut(s)	3149, 3257
BanI	GGYRCC	2 cut(s)	1440, 1672
BanII	GRGCYC	3 cut(s)	617, 3149, 3257
BbsI	GAAGAC	1 cut(s)	2730
BbvCI	CCTCAGC	2 cut(s)	1121, 1610
BccI	CCATC	7 cut(s)	596, 833, 917, 950, 1643, 2978, 3111
BceAI	ACGGC	1 cut(s)	2436
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	5 cut(s)	869, 1542, 1742, 2261, 2491
BfaI	CTAG	5 cut(s)	24, 2358, 2366, 2502, 3114
BfmI	CTRYAG	3 cut(s)	972, 2838, 3000
BfrI	CTTAAG	1 cut(s)	2237
BfuAI	ACCTGC	2 cut(s)	1118, 2005
BglI	GCCNNNNNGGC	3 cut(s)	1660, 2457, 2466
BglII	AGATCT	4 cut(s)	1344, 2230, 2515, 3312
BlpI	GCTNAGC	1 cut(s)	1038
Bme18I	GGWCC	3 cut(s)	1189, 1624, 3218
BmeRI	GACNNNNNGTC	2 cut(s)	814, 2894
BmeT110I	CYCGRG	1 cut(s)	2994
BmgT120I	GGNCC	9 cut(s)	1189, 1624, 1652, 2271, 3145, 3146, 3218, 3253, 3254
BmiI	GGNNCC	7 cut(s)	1190, 1442, 1674, 2272, 3147, 3213, 3255
BmsI	GCATC	7 cut(s)	205, 928, 958, 1014, 2206, 2488, 3046
BpiI	GAAGAC	1 cut(s)	2730
BpmI	CTGGAG	4 cut(s)	1214, 2496, 3186, 3360
Bpu10I	CCTNAGC	3 cut(s)	1121, 1518, 1610
Bpu1102I	GCTNAGC	1 cut(s)	1038
Bpu14I	TTCGAA	1 cut(s)	2761
BpuEI	CTTGAG	2 cut(s)	1333, 2158
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	3 cut(s)	63, 69, 1206
BsaHI	GRCGYC	2 cut(s)	1358, 2910
BsaI	GGTCTC	1 cut(s)	1742
BsaJI	CCNNGG	9 cut(s)	1160, 1680, 1725, 2009, 2620, 2954, 3183, 3203, 3337
BsaWI	WCCGGW	1 cut(s)	1380
BsaXI	ACNNNNNCTCC	4 cut(s)	562, 592, 918, 948
Bsc4I	CCNNNNNNNGG	8 cut(s)	673, 1757, 2014, 2885, 2912, 2960, 2975, 3221
Bse1I	ACTGG	8 cut(s)	1453, 1576, 2346, 2391, 2452, 2632, 2965, 3169
Bse3DI	GCAATG	3 cut(s)	2326, 2850, 3066
Bse8I	GATNNNNATC	3 cut(s)	63, 69, 1206
BseDI	CCNNGG	9 cut(s)	1160, 1680, 1725, 2009, 2620, 2954, 3183, 3203, 3337
BseJI	GATNNNNATC	3 cut(s)	63, 69, 1206
BseLI	CCNNNNNNNGG	8 cut(s)	673, 1757, 2014, 2885, 2912, 2960, 2975, 3221
BseMI	GCAATG	3 cut(s)	2326, 2850, 3066
BseNI	ACTGG	8 cut(s)	1453, 1576, 2346, 2391, 2452, 2632, 2965, 3169
BseRI	GAGGAG	9 cut(s)	61, 132, 188, 457, 640, 686, 689, 739, 742
BseSI	GKGCMC	2 cut(s)	3149, 3257
BseYI	CCCAGC	1 cut(s)	1643
BshFI	GGCC	7 cut(s)	1654, 2273, 2451, 2460, 2702, 3147, 3255
BshNI	GGYRCC	2 cut(s)	1440, 1672
BsiHKCI	CYCGRG	1 cut(s)	2994
BsiSI	CCGG	2 cut(s)	1381, 2461
BslFI	GGGAC	6 cut(s)	299, 1202, 2390, 2619, 2638, 2971
BslI	CCNNNNNNNGG	8 cut(s)	673, 1757, 2014, 2885, 2912, 2960, 2975, 3221
BsmAI	GTCTC	5 cut(s)	869, 1542, 1742, 2261, 2491
BsmFI	GGGAC	6 cut(s)	299, 1202, 2390, 2619, 2638, 2971
BsmI	GAATGC	2 cut(s)	1051, 3115
BsnI	GGCC	7 cut(s)	1654, 2273, 2451, 2460, 2702, 3147, 3255
Bso31I	GGTCTC	1 cut(s)	1742
BsoBI	CYCGRG	1 cut(s)	2994
Bsp119I	TTCGAA	1 cut(s)	2761
Bsp120I	GGGCCC	2 cut(s)	3145, 3253
Bsp1286I	GDGCHC	3 cut(s)	617, 3149, 3257
Bsp1407I	TGTACA	1 cut(s)	2194
Bsp1720I	GCTNAGC	1 cut(s)	1038
Bsp19I	CCATGG	1 cut(s)	2620
BspACI	CCGC	7 cut(s)	334, 523, 721, 1798, 2070, 2684, 3011
BspANI	GGCC	7 cut(s)	1654, 2273, 2451, 2460, 2702, 3147, 3255
BspLI	GGNNCC	7 cut(s)	1190, 1442, 1674, 2272, 3147, 3213, 3255
BspMAI	CTGCAG	2 cut(s)	976, 3004
BspMI	ACCTGC	2 cut(s)	1118, 2005
BspPI	GGATC	6 cut(s)	72, 78, 986, 1202, 1582, 3040
BspQI	GCTCTTC	1 cut(s)	2907
BspT104I	TTCGAA	1 cut(s)	2761
BspT107I	GGYRCC	2 cut(s)	1440, 1672
BspTI	CTTAAG	1 cut(s)	2237
BspTNI	GGTCTC	1 cut(s)	1742
BsrBI	CCGCTC	2 cut(s)	334, 2684
BsrDI	GCAATG	3 cut(s)	2326, 2850, 3066
BsrGI	TGTACA	1 cut(s)	2194
BsrI	ACTGG	8 cut(s)	1453, 1576, 2346, 2391, 2452, 2632, 2965, 3169
BssECI	CCNNGG	9 cut(s)	1160, 1680, 1725, 2009, 2620, 2954, 3183, 3203, 3337
BssNAI	GTATAC	1 cut(s)	1756
BssNI	GRCGYC	2 cut(s)	1358, 2910
BssT1I	CCWWGG	2 cut(s)	1725, 2620
Bst1107I	GTATAC	1 cut(s)	1756
Bst4CI	ACNGT	6 cut(s)	1054, 1706, 1987, 2435, 2885, 3267
Bst6I	CTCTTC	6 cut(s)	320, 387, 404, 527, 2907, 3303
BstACI	GRCGYC	2 cut(s)	1358, 2910
BstAFI	CTTAAG	1 cut(s)	2237
BstAPI	GCANNNNNTGC	1 cut(s)	3008
BstAUI	TGTACA	1 cut(s)	2194
BstBAI	YACGTR	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	2761
BstC8I	GCNNGC	5 cut(s)	865, 1439, 2458, 2790, 3233
BstDSI	CCRYGG	1 cut(s)	2620
BstMAI	GTCTC	5 cut(s)	869, 1542, 1742, 2261, 2491
BstSFI	CTRYAG	3 cut(s)	972, 2838, 3000
BstSLI	GKGCMC	2 cut(s)	3149, 3257
BstV2I	GAAGAC	1 cut(s)	2730
BstX2I	RGATCY	5 cut(s)	1344, 2230, 2515, 3045, 3312
BstXI	CCANNNNNNTGG	2 cut(s)	1732, 2627
BstYI	RGATCY	5 cut(s)	1344, 2230, 2515, 3045, 3312
BstZ17I	GTATAC	1 cut(s)	1756
BsuRI	GGCC	7 cut(s)	1654, 2273, 2451, 2460, 2702, 3147, 3255
BtgI	CCRYGG	1 cut(s)	2620
BtsI	GCAGTG	2 cut(s)	1523, 2986
BtsIMutI	CAGTG	4 cut(s)	1523, 1711, 2353, 2986
BveI	ACCTGC	2 cut(s)	1118, 2005
Cac8I	GCNNGC	5 cut(s)	865, 1439, 2458, 2790, 3233
CaiI	CAGNNNCTG	2 cut(s)	971, 1525
Cfr13I	GGNCC	9 cut(s)	1189, 1624, 1652, 2271, 3145, 3146, 3218, 3253, 3254
CseI	GACGC	2 cut(s)	1366, 2899
Csp6I	GTAC	7 cut(s)	181, 547, 1598, 1821, 2195, 2445, 3238
CviAII	CATG	9 cut(s)	1406, 1900, 1927, 2098, 2126, 2243, 2267, 2621, 3019
CviQI	GTAC	7 cut(s)	181, 547, 1598, 1821, 2195, 2445, 3238
DraI	TTTAAA	1 cut(s)	2650
DriI	GACNNNNNGTC	2 cut(s)	814, 2894
EaeI	YGGCCR	2 cut(s)	2449, 2458
Eam1104I	CTCTTC	6 cut(s)	320, 387, 404, 527, 2907, 3303
Eam1105I	GACNNNNNGTC	2 cut(s)	814, 2894
EarI	CTCTTC	6 cut(s)	320, 387, 404, 527, 2907, 3303
EciI	GGCGGA	1 cut(s)	2085
Eco130I	CCWWGG	2 cut(s)	1725, 2620
Eco24I	GRGCYC	3 cut(s)	617, 3149, 3257
Eco31I	GGTCTC	1 cut(s)	1742
Eco32I	GATATC	4 cut(s)	1711, 2249, 2779, 3362
Eco47I	GGWCC	3 cut(s)	1189, 1624, 3218
Eco57I	CTGAAG	1 cut(s)	1814
Eco88I	CYCGRG	1 cut(s)	2994
EcoO109I	RGGNCCY	4 cut(s)	1189, 3146, 3253, 3254
EcoRV	GATATC	4 cut(s)	1711, 2249, 2779, 3362
EcoT14I	CCWWGG	2 cut(s)	1725, 2620
EcoT38I	GRGCYC	3 cut(s)	617, 3149, 3257
ErhI	CCWWGG	2 cut(s)	1725, 2620
FaeI	CATG	9 cut(s)	1409, 1903, 1930, 2101, 2129, 2246, 2270, 2624, 3022
FalI	AAGNNNNNCTT	2 cut(s)	3224, 3256
FaqI	GGGAC	6 cut(s)	299, 1202, 2390, 2619, 2638, 2971
FatI	CATG	9 cut(s)	1405, 1899, 1926, 2097, 2125, 2242, 2266, 2620, 3018
FauI	CCCGC	1 cut(s)	1791
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	1755
FriOI	GRGCYC	3 cut(s)	617, 3149, 3257
FspBI	CTAG	5 cut(s)	24, 2358, 2366, 2502, 3114
GsaI	CCCAGC	1 cut(s)	1647
GsuI	CTGGAG	4 cut(s)	1214, 2496, 3186, 3360
HaeIII	GGCC	7 cut(s)	1654, 2273, 2451, 2460, 2702, 3147, 3255
HapII	CCGG	2 cut(s)	1381, 2461
HgaI	GACGC	2 cut(s)	1366, 2899
Hin1I	GRCGYC	2 cut(s)	1358, 2910
Hin1II	CATG	9 cut(s)	1409, 1903, 1930, 2101, 2129, 2246, 2270, 2624, 3022
HincII	GTYRAC	1 cut(s)	1285
HindII	GTYRAC	1 cut(s)	1285
HindIII	AAGCTT	1 cut(s)	1002
HpaII	CCGG	2 cut(s)	1381, 2461
HphI	GGTGA	8 cut(s)	1033, 1124, 1261, 1348, 2401, 2423, 2786, 3118
Hpy166II	GTNNAC	8 cut(s)	14, 1285, 1756, 1790, 2298, 2431, 2888, 3162
Hpy8I	GTNNAC	8 cut(s)	14, 1285, 1756, 1790, 2298, 2431, 2888, 3162
Hpy99I	CGWCG	2 cut(s)	144, 2915
HpyCH4III	ACNGT	6 cut(s)	1054, 1706, 1987, 2435, 2885, 3267
HpyCH4IV	ACGT	5 cut(s)	183, 376, 888, 2443, 3140
HpySE526I	ACGT	5 cut(s)	183, 376, 888, 2443, 3140
Hsp92I	GRCGYC	2 cut(s)	1358, 2910
Hsp92II	CATG	9 cut(s)	1409, 1903, 1930, 2101, 2129, 2246, 2270, 2624, 3022
Ksp22I	TGATCA	1 cut(s)	499
LguI	GCTCTTC	1 cut(s)	2907
LmnI	GCTCC	6 cut(s)	331, 508, 1684, 2377, 2515, 3167
LweI	GCATC	7 cut(s)	205, 928, 958, 1014, 2206, 2488, 3046
MaeI	CTAG	5 cut(s)	24, 2358, 2366, 2502, 3114
MaeII	ACGT	5 cut(s)	183, 376, 888, 2443, 3140
MaeIII	GTNAC	4 cut(s)	131, 1885, 2151, 3124
MbiI	CCGCTC	2 cut(s)	334, 2684
MfeI	CAATTG	4 cut(s)	1065, 1388, 2102, 2209
MflI	RGATCY	5 cut(s)	1344, 2230, 2515, 3045, 3312
MhlI	GDGCHC	3 cut(s)	617, 3149, 3257
MlyI	GAGTC	6 cut(s)	58, 136, 826, 1169, 2303, 2845
MmeI	TCCRAC	3 cut(s)	1543, 2419, 3066
MroXI	GAANNNNTTC	1 cut(s)	2757
MseI	TTAA	7 cut(s)	752, 957, 2238, 2313, 2649, 2655, 3293
MslI	CAYNNNNRTG	4 cut(s)	471, 597, 1535, 3054
MspCI	CTTAAG	1 cut(s)	2237
MspI	CCGG	2 cut(s)	1381, 2461
MunI	CAATTG	4 cut(s)	1065, 1388, 2102, 2209
Mva1269I	GAATGC	2 cut(s)	1051, 3115
NcoI	CCATGG	1 cut(s)	2620
NlaIII	CATG	9 cut(s)	1409, 1903, 1930, 2101, 2129, 2246, 2270, 2624, 3022
NlaIV	GGNNCC	7 cut(s)	1190, 1442, 1674, 2272, 3147, 3213, 3255
NmeAIII	GCCGAG	1 cut(s)	1990
NmuCI	GTSAC	2 cut(s)	131, 3124
NspV	TTCGAA	1 cut(s)	2761
PciSI	GCTCTTC	1 cut(s)	2907
PcsI	WCGNNNNNNNCGW	3 cut(s)	136, 148, 2449
PctI	GAATGC	2 cut(s)	1051, 3115
PdmI	GAANNNNTTC	1 cut(s)	2757
PfeI	GAWTC	7 cut(s)	167, 488, 641, 845, 1169, 1699, 2735
PfoI	TCCNGGA	1 cut(s)	3214
PleI	GAGTC	6 cut(s)	57, 135, 826, 1169, 2302, 2845
PpsI	GAGTC	6 cut(s)	57, 135, 826, 1169, 2302, 2845
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	1189
PshBI	ATTAAT	1 cut(s)	957
Psp1406I	AACGTT	1 cut(s)	3140
Psp5II	RGGWCCY	1 cut(s)	1189
PspFI	CCCAGC	1 cut(s)	1643
PspN4I	GGNNCC	7 cut(s)	1190, 1442, 1674, 2272, 3147, 3213, 3255
PspOMI	GGGCCC	2 cut(s)	3145, 3253
PspPI	GGNCC	9 cut(s)	1189, 1624, 1652, 2271, 3145, 3146, 3218, 3253, 3254
PspPPI	RGGWCCY	1 cut(s)	1189
PstI	CTGCAG	2 cut(s)	976, 3004
PstNI	CAGNNNCTG	2 cut(s)	971, 1525
PsuI	RGATCY	5 cut(s)	1344, 2230, 2515, 3045, 3312
RsaI	GTAC	7 cut(s)	182, 548, 1599, 1822, 2196, 2446, 3239
RsaNI	GTAC	7 cut(s)	181, 547, 1598, 1821, 2195, 2445, 3238
RseI	CAYNNNNRTG	4 cut(s)	471, 597, 1535, 3054
SapI	GCTCTTC	1 cut(s)	2907
SaqAI	TTAA	7 cut(s)	752, 957, 2238, 2313, 2649, 2655, 3293
Sau96I	GGNCC	9 cut(s)	1189, 1624, 1652, 2271, 3145, 3146, 3218, 3253, 3254
SchI	GAGTC	6 cut(s)	58, 136, 826, 1169, 2303, 2845
SduI	GDGCHC	3 cut(s)	617, 3149, 3257
SfaNI	GCATC	7 cut(s)	205, 928, 958, 1014, 2206, 2488, 3046
SfcI	CTRYAG	3 cut(s)	972, 2838, 3000
SfiI	GGCCNNNNNGGCC	1 cut(s)	2457
SfuI	TTCGAA	1 cut(s)	2761
SinI	GGWCC	3 cut(s)	1189, 1624, 3218
SmiMI	CAYNNNNRTG	4 cut(s)	471, 597, 1535, 3054
SmlI	CTYRAG	3 cut(s)	1348, 2137, 2237
SmoI	CTYRAG	3 cut(s)	1348, 2137, 2237
SsiI	CCGC	7 cut(s)	334, 523, 721, 1798, 2070, 2684, 3011
SspI	AATATT	1 cut(s)	1966
SspMI	CTAG	5 cut(s)	24, 2358, 2366, 2502, 3114
StyI	CCWWGG	2 cut(s)	1725, 2620
TaaI	ACNGT	6 cut(s)	1054, 1706, 1987, 2435, 2885, 3267
TaiI	ACGT	5 cut(s)	186, 379, 891, 2446, 3143
TaqI	TCGA	9 cut(s)	55, 199, 436, 1332, 1546, 1915, 1951, 2109, 2761
TatI	WGTACW	5 cut(s)	546, 1597, 1820, 2194, 3237
TauI	GCSGC	3 cut(s)	526, 2687, 3014
TfiI	GAWTC	7 cut(s)	167, 488, 641, 845, 1169, 1699, 2735
Tru1I	TTAA	7 cut(s)	752, 957, 2238, 2313, 2649, 2655, 3293
Tru9I	TTAA	7 cut(s)	752, 957, 2238, 2313, 2649, 2655, 3293
TscAI	CASTG	4 cut(s)	1530, 1711, 2353, 2986
TseFI	GTSAC	2 cut(s)	131, 3124
Tsp45I	GTSAC	2 cut(s)	131, 3124
TspGWI	ACGGA	3 cut(s)	709, 1304, 1773
TspRI	CASTG	4 cut(s)	1530, 1711, 2353, 2986
Vha464I	CTTAAG	1 cut(s)	2237
VpaK11BI	GGWCC	3 cut(s)	1189, 1624, 3218
VspI	ATTAAT	1 cut(s)	957
XapI	RAATTY	4 cut(s)	1321, 2181, 2395, 2651
XmiI	GTMKAC	1 cut(s)	1755
XmnI	GAANNNNTTC	1 cut(s)	2757
XspI	CTAG	5 cut(s)	24, 2358, 2366, 2502, 3114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.