Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013777.1

Orthogroup ID

OG0000906

Physical Location & Seq

Genomic Coordinates Reverse (-)

21321 .. 22409

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013777.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atggaagagggcaaacataagtcgaggaaggagggagaatccaagaggagtcaccgagatcgggatcgcgagaaggagagcaataaacagaaacacagggataaagatagagataagagagaccgtggtgctcgacgttctgagaaagagaagagttatgattctgaagaaaggtttgataaagagaagcatcgagacaaggacagtgatagggcgcgtagccgagatgatgaaagaaagaaaacaagagaaaggaagagggataacaataaagagaaggacaaggagagggagggggagaaagacaaagaaaaggagaagagggagagggttagagagaaggaaagagaaggagaaagagacaaggagagggagagggagagaagagaacgagaaagagaggttgaagatagggtgagagagaagagggagcatgagagggaaaatgataaagatcgagagaggaggataagagagagggagaggcatagggatgctgataccgatgatattgatgatcatgttagggatcgtgataggaagcggcataggaatgataaaaatgagtacaaggagacagagcgggaaaggagtagtagtagggtaaagacacatatggatgatggagatgagagcccacaaaagaaaagtgatgaagattcagttcagaagccaacccgtgaggaggagttagagaatgaacaaaggaaattggatgaggagatggaaaaacgaaggaggagagttcaggagtggcaagagttaaagagaaagaaggaagaagatgagagagatcatggggaagggcatgttgatgaaccgatgtccagaaagacctggactcttgaaggagaatctgatgacgaagaagttcatccctcagggacatcagagccaggtacaaacctcaatggagaaggcaatcttattgacaaagaagatggagatttcatggtagattctgacaacgaaacagctgcacttgctttaccaaatggagctgataatgctagcggggatgaggagactgatccgttagatgcttttatgaattctatggtattgcctgaagttgagaaatataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

362

Amino Acids

44.09

Weight (kDa)

5.52

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT3G09620 AT3G09620
fragaria_vesca	FvH4_3g27090 FvH4_4g11730 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270
malus_domestica	MD06G1002800.v1.1 MD09G1086200.v1.1
prunus_persica	Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1
pyrus_communis	pycom06g00290 pycom09g01160
rosa_chinensis	RchiOBHm_Chr5g0049651 RchiOBHm_Chr7g0217001
rosa_laevigata	RLG00000002515 RLG00000034630
rosa_multiflora	Rmu_co8441089.1_g000001 Rmu_sc0001725.1_g000004 Rmu_sc0002114.1_g000002 Rmu_sc0013777.1_g000004 Rmu_sc0013777.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032010 Rroxscaffold_3G00242640
rosa_rugosa	Rorug05G0249600 Rorug05G0249700 Rorug05G0249800 Rorug05G0249900 Rorug05G0250000 Rorug05G0250100 Rorug05G0250200 Rorug07G0164800 Rorug07G0164900 Rorug07G0165000 Rorug07G0165100 Rorug07G0165200 Rorug07G0165300 Rorug07G0165400.1 Rorug07G0165500.1 Rorug07G0165600
rosa_samantha	Rh5AG326000 Rh5BG337300 Rh5CG362000 Rh5DG349500 Rh7AG305000 Rh7BG296500 Rh7CG324100 Rh7DG305100
rosa_wichuraiana	Rw5G030810 Rw7G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	583
AccII	CGCG	2 cut(s)	69, 217
AciI	CCGC	3 cut(s)	544, 583, 1014
AclWI	GGATC	3 cut(s)	72, 537, 1025
AcsI	RAATTY	1 cut(s)	1051
AcuI	CTGAAG	2 cut(s)	186, 1089
AfaI	GTAC	2 cut(s)	569, 901
AfiI	CCNNNNNNNGG	2 cut(s)	61, 685
AgsI	TTSAA	2 cut(s)	407, 848
AjnI	CCWGG	2 cut(s)	836, 895
AluBI	AGCT	2 cut(s)	977, 1001
AluI	AGCT	2 cut(s)	977, 1001
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	5 cut(s)	114, 189, 354, 569, 1019
AlwI	GGATC	3 cut(s)	72, 537, 1025
ApeKI	GCWGC	1 cut(s)	977
ApoI	RAATTY	1 cut(s)	1051
Asp700I	GAANNNNTTC	1 cut(s)	870
AspLEI	GCGC	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	44, 427
AsuNHI	GCTAGC	1 cut(s)	1010
AxyI	CCTNAGG	1 cut(s)	880
BanII	GRGCYC	1 cut(s)	638
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	964
BccI	CCATC	3 cut(s)	617, 718, 935
BcgI	CGANNNNNNTGC	2 cut(s)	959, 993
BciT130I	CCWGG	2 cut(s)	838, 897
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	5 cut(s)	114, 189, 354, 569, 1019
BfaI	CTAG	1 cut(s)	1011
BisI	GCNGC	2 cut(s)	545, 978
BlsI	GCNGC	2 cut(s)	546, 979
Bme1390I	CCNGG	2 cut(s)	838, 897
BmrFI	CCNGG	2 cut(s)	838, 897
BmsI	GCATC	3 cut(s)	199, 484, 1030
BmtI	GCTAGC	1 cut(s)	1014
BsaBI	GATNNNNATC	2 cut(s)	63, 453
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 685
Bse21I	CCTNAGG	1 cut(s)	880
Bse8I	GATNNNNATC	2 cut(s)	63, 453
BseBI	CCWGG	2 cut(s)	838, 897
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	5 cut(s)	499, 625, 721, 874, 1024
BseJI	GATNNNNATC	2 cut(s)	63, 453
BseLI	CCNNNNNNNGG	2 cut(s)	61, 685
BseMII	CTCAG	2 cut(s)	132, 894
BseRI	GAGGAG	7 cut(s)	61, 478, 698, 701, 734, 754, 1037
BseXI	GCAGC	1 cut(s)	964
BsgI	GTGCAG	1 cut(s)	963
Bsh1236I	CGCG	2 cut(s)	69, 217
BsiHKAI	GWGCWC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	898
BslI	CCNNNNNNNGG	2 cut(s)	61, 685
BsmAI	GTCTC	5 cut(s)	114, 189, 354, 569, 1019
BsmFI	GGGAC	1 cut(s)	898
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	133, 638
Bsp143I	GATC	7 cut(s)	58, 64, 454, 517, 529, 793, 1030
Bsp68I	TCGCGA	1 cut(s)	69
BspACI	CCGC	3 cut(s)	544, 583, 1014
BspCNI	CTCAG	2 cut(s)	133, 893
BspFNI	CGCG	2 cut(s)	69, 217
BspOI	GCTAGC	1 cut(s)	1014
BspPI	GGATC	3 cut(s)	72, 537, 1025
BspTNI	GGTCTC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	583
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	7 cut(s)	58, 64, 454, 517, 529, 793, 1030
Bst2UI	CCWGG	2 cut(s)	838, 897
Bst4CI	ACNGT	2 cut(s)	125, 206
Bst6I	CTCTTC	5 cut(s)	146, 251, 314, 379, 419
BstC8I	GCNNGC	1 cut(s)	1012
BstDEI	CTNAG	2 cut(s)	141, 880
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	5 cut(s)	499, 625, 721, 874, 1024
BstFNI	CGCG	2 cut(s)	69, 217
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	7 cut(s)	61, 67, 457, 520, 532, 796, 1033
BstMAI	GTCTC	5 cut(s)	114, 189, 354, 569, 1019
BstMBI	GATC	7 cut(s)	58, 64, 454, 517, 529, 793, 1030
BstMWI	GCNNNNNNNGC	2 cut(s)	983, 1007
BstNI	CCWGG	2 cut(s)	838, 897
BstNSI	RCATGY	1 cut(s)	812
BstSCI	CCNGG	2 cut(s)	836, 895
BstUI	CGCG	2 cut(s)	69, 217
BstV1I	GCAGC	1 cut(s)	964
Bsu36I	CCTNAGG	1 cut(s)	880
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	5 cut(s)	499, 625, 721, 874, 1024
BtsIMutI	CAGTG	1 cut(s)	211
BtuMI	TCGCGA	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	1012
CfoI	GCGC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	568, 900
CviAII	CATG	5 cut(s)	434, 521, 797, 809, 952
CviJI	RGCY	6 cut(s)	222, 636, 673, 895, 977, 1001
CviKI_1	RGCY	6 cut(s)	222, 636, 673, 895, 977, 1001
CviQI	GTAC	2 cut(s)	568, 900
DdeI	CTNAG	2 cut(s)	141, 880
DpnI	GATC	7 cut(s)	60, 66, 456, 519, 531, 795, 1032
DpnII	GATC	7 cut(s)	58, 64, 454, 517, 529, 793, 1030
Eam1104I	CTCTTC	5 cut(s)	146, 251, 314, 379, 419
EarI	CTCTTC	5 cut(s)	146, 251, 314, 379, 419
Eco24I	GRGCYC	1 cut(s)	638
Eco31I	GGTCTC	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	186, 1089
Eco81I	CCTNAGG	1 cut(s)	880
EcoRI	GAATTC	1 cut(s)	1051
EcoRII	CCWGG	2 cut(s)	836, 895
EcoT38I	GRGCYC	1 cut(s)	638
FaeI	CATG	5 cut(s)	437, 524, 800, 812, 955
FalI	AAGNNNNNCTT	2 cut(s)	909, 941
FaqI	GGGAC	1 cut(s)	898
FatI	CATG	5 cut(s)	433, 520, 796, 808, 951
FauI	CCCGC	2 cut(s)	576, 1007
FauNDI	CATATG	1 cut(s)	615
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	545, 978
FokI	GGATG	5 cut(s)	506, 632, 728, 861, 1031
FriOI	GRGCYC	1 cut(s)	638
Fsp4HI	GCNGC	2 cut(s)	545, 978
FspBI	CTAG	1 cut(s)	1011
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	545, 978
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	5 cut(s)	437, 524, 800, 812, 955
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	7 cut(s)	38, 49, 161, 659, 841, 854, 959
HphI	GGTGA	2 cut(s)	44, 427
Hpy188I	TCNGA	6 cut(s)	142, 166, 669, 859, 892, 964
Hpy188III	TCNNGA	8 cut(s)	62, 68, 194, 458, 533, 749, 828, 845
Hpy99I	CGWCG	1 cut(s)	138
HpyCH4III	ACNGT	2 cut(s)	125, 206
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	983, 1007
HpyF3I	CTNAG	2 cut(s)	141, 880
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	5 cut(s)	437, 524, 800, 812, 955
HspAI	GCGC	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	7 cut(s)	58, 64, 454, 517, 529, 793, 1030
LmnI	GCTCC	2 cut(s)	430, 998
LpnPI	CCDG	9 cut(s)	82, 734, 823, 841, 850, 867, 882, 909, 1080
Lsp1109I	GCAGC	1 cut(s)	964
LweI	GCATC	3 cut(s)	199, 484, 1030
MaeI	CTAG	1 cut(s)	1011
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	7 cut(s)	60, 66, 456, 519, 531, 795, 1032
MbiI	CCGCTC	1 cut(s)	583
MboI	GATC	7 cut(s)	58, 64, 454, 517, 529, 793, 1030
MhlI	GDGCHC	2 cut(s)	133, 638
MluCI	AATT	2 cut(s)	710, 1051
MlyI	GAGTC	2 cut(s)	58, 835
MroXI	GAANNNNTTC	1 cut(s)	870
MseI	TTAA	1 cut(s)	764
MslI	CAYNNNNRTG	4 cut(s)	492, 552, 618, 813
MspA1I	CMGCKG	1 cut(s)	977
MspR9I	CCNGG	2 cut(s)	838, 897
MvaI	CCWGG	2 cut(s)	838, 897
MvnI	CGCG	2 cut(s)	69, 217
MwoI	GCNNNNNNNGC	2 cut(s)	983, 1007
NdeI	CATATG	1 cut(s)	615
NdeII	GATC	7 cut(s)	58, 64, 454, 517, 529, 793, 1030
NheI	GCTAGC	1 cut(s)	1010
NlaIII	CATG	5 cut(s)	437, 524, 800, 812, 955
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	50
NruI	TCGCGA	1 cut(s)	69
NspI	RCATGY	1 cut(s)	812
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	5 cut(s)	38, 161, 659, 854, 959
PkrI	GCNGC	2 cut(s)	546, 979
PleI	GAGTC	2 cut(s)	57, 835
PpsI	GAGTC	2 cut(s)	57, 835
Psp6I	CCWGG	2 cut(s)	836, 895
PspGI	CCWGG	2 cut(s)	836, 895
PvuII	CAGCTG	1 cut(s)	977
RruI	TCGCGA	1 cut(s)	69
RsaI	GTAC	2 cut(s)	569, 901
RsaNI	GTAC	2 cut(s)	568, 900
RseI	CAYNNNNRTG	4 cut(s)	492, 552, 618, 813
SaqAI	TTAA	1 cut(s)	764
SatI	GCNGC	2 cut(s)	545, 978
Sau3AI	GATC	7 cut(s)	58, 64, 454, 517, 529, 793, 1030
SchI	GAGTC	2 cut(s)	58, 835
ScrFI	CCNGG	2 cut(s)	838, 897
SduI	GDGCHC	2 cut(s)	133, 638
SetI	ASST	8 cut(s)	139, 176, 405, 839, 901, 909, 979, 1003
SfaNI	GCATC	3 cut(s)	199, 484, 1030
SmiMI	CAYNNNNRTG	4 cut(s)	492, 552, 618, 813
Sse9I	AATT	2 cut(s)	710, 1051
SsiI	CCGC	3 cut(s)	544, 583, 1014
SspMI	CTAG	1 cut(s)	1011
StyD4I	CCNGG	2 cut(s)	836, 895
TaaI	ACNGT	2 cut(s)	125, 206
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	4 cut(s)	23, 133, 193, 457
TasI	AATT	2 cut(s)	710, 1051
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	547
TfiI	GAWTC	5 cut(s)	38, 161, 659, 854, 959
Tru1I	TTAA	1 cut(s)	764
Tru9I	TTAA	1 cut(s)	764
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	977
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	7 cut(s)	246, 669, 714, 831, 863, 940, 1064
TspGWI	ACGGA	1 cut(s)	1023
TspRI	CASTG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	1051
XceI	RCATGY	1 cut(s)	812
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.