RLG00000002515

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
35547024 .. 35569895
22872 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002515

Sequence Viewer

Length: 4152 bp
ATGGAAACGTTGAACCGTTTTGGAAACGGCAGCGGCGGGTCTCCGTCAGGCCGAGTCCAAAAATTGTTTAACGCCGGTGGACGGTGGGTGGAGGACGGAAGAAGACAAAAGTTCACCAAGGCGGGGATGATTTATGAAATCGATTCACTGACAGCAAAGAGTAAAAGGTTTCTGTTTAGTCTGGAGTTTGTATATATTGAAGTTAGTACAGCGAATCTTGATATTATTGCTGGTGTGGCTGCTCTAATTTTGGGATCCAAGAAGTTACCTGAATTGGGCAAGAGACAAATTTGTCATTCGGCTCTGAGTTCTTTGCTTTGGTTGCACGCACTAAAAGAGACAACTAAGATCTTTAGTTACATCCCTGCCATTCAGTCTGGACTTCACAACAATCAGCTTTTGGAGAAAGCACTGGAAGAATGTGGTGATGGCTTGGATTTAGCAATTAGACGCTTGAATCAGCTATACTTTTGTTTGGCTGCAAATAAATATGGTGTGCTGTCAGAAGCAGGTTTCCAATCCCAGCCTGAAGAGGGTCAACTGAAGGGTGATAAAATGTCCAAGCCTGAACTATTTGTGACAGCAAAACATCCAGAAGCGCCAGCGCCAACTCTGAAGAGTGCCTCTCAGGATTCCAATTCAGATTTCTCGTTCTGCAATAAGACACCCCTTCTAGGGTTTCCTGACGAAGCAATGGAAGAGAGCAAACATAAATCTAGGAAGGAAGGGGAAGCTAAGAGGAGTCATCGAGATCGGGATCGTGAGAAGGAGAAGAAAGTAGATAGACACAGAGAAAAAGATAGAGGAGATAAGAGTCGTGACAGCCGACGATATGAGCGAGAAAAGAGTTCTGATTCTGAGGAGAGGTACGTGAGAGAGAAGCATCGTGATAAGGAGGTTGATAGCATACGAAGCAGAGATGATGAACGAGAGAGAAGCAAAGATAGGAAAAGGGATAAAGATAAAGAGAGGGACAAGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGTCAAAGAAAAGGAGAAGAGGGAGCGGAAGGAGAGGGAAAGAGAAAAAGAGAGGGAGAGAAGGGAACGTGAAAGGGATGCAGAAGAGAGGGCGAGGGAGAAGAGGGAGAGGGAAAAGGAAAAAGATCGAGAGAGGAGGATAAGGGAGAGGGAGAGGGAGCGGCATAGAGATGTTGATACTGATGATTCCGAGGATGATCTTAGGGAGCGTAGTAGGAAGCGGCATAAGAAGAGTGATAGCGATTACAAGGAGAGAGATCGGGAAAGGAGTATTAGTAGGTCAAACAGACATAGGGACGATGGAATTGAAAGCCCAAGAAAGAGGAGTGTTGAAGATGATTCGGATAAAAAGGAGAAGCCAACCCGTGAGGAGGAGTTAGAGGACGAACAACGGAAATTGGATGAGGAAATGGAAAAGCGGAGGAGGAGAGTTCAGGAGTGGCAAGAGTTAAAGAGAAAGAAGGAAGAAGATGAGAGAGAGAAGCGTGGGGAAGATAATGTTGCCGACAACAAGTCTGGAAAGACCTGGACTCTTGATGGAGAATCTGATGACGAAGAAGCAGGCAAATCAGAGACAGGTATGGACGTTGATAGGGAGGTCAATGGGGATGATCTTACTGATGGAGAAGTTGTAGATGCCATCATGCCAGATATTAATAAAACAGCTGCTGCAGGGAATGAGGAAGTTGATCCATTAGAAGCTTTTATGCAATCTGTGGTGATGCCCGAAGTTGCAAAGCTGAATGCTACTGTGGAACCCTCAATTGTTGATGACAAGAACAAGGAGAAAAAGGTTGATACAAGTAATGGTGAAAAGCTGAGGGCAGGTTCAAATAAATCTATTGGCAGAATAATTCCTGGGGAGGATTCTGACTCGGATTACGGGGACCTTGAGAATGATGACGATCCTTTAGAAAATGAAGATGATGATGAGTTCATAAAAAGGGTGAAAAAGACGAAAGCTGAGAAACTTTCCTTAGTTGACCACTCGAAGATAGATTATATACCATTCCGTAAAAATTTTTATATCGAGGTGAAGGAGATCTCAAGGATGACGCCAGATGAGGTTGGTGCATACAGGAAACAATTGGAATTGAAGATACATGGTAAGGATGTGCCAAAGCCCATAAAGAGCTGGCACCAAACTGGACTTACAAGTAAAATTTTGGATATAATAAAGAAGCTCAACTATGAAATGCCAATGCCAATTCAAGCTCAGGCACTGCCCATAATTATGAGTGGTCGAGACTGCATTGGTGTTGGAAAAACTGGATCAGGCAAAACCCTTGCATTTGTACTGCCAATGCTGAGGCATATCAAGGACCAGCCAGCTGTGGTAGCTGGGGATGGGCCCATTGGGCTTATTATGGCACCAACCAGGGAGCTTGTTCAGCAGATTCACAGTGATATCAAAAAGTTTGCCAAGGTTCTGGGTCTCAGGTGTGTGCCTGTATATGGAGGTTCAGGTGTTGCACAACAAATTAGTGAACTGAAGCGGGGTGCTGAAATTGTTGTCTGTACTCCTGGTAGGATGATTGACATACTTTGCACAAGTGGAGGAAAAATTACAAATCTGCGTAGAGTAACTTATTTGGTCATGGATGAAGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACTCGAATTGTTCAAAATATTCGTCCAGATCGCCAAACCGTATTATTTTCTGCCACTTTCCCTCGGCAGGTTGAAGTTTTGGCTCGTAAAGTCTTAGATAAACCTGTGGAAATACAAGTTGGCGGAAGGAGTGTTGTGAATAAGGACATCATGCAATTGGTCGAAGTGAGGCAGGAACATGAAAGGTTCTTGAGATTGTTAGAGTTGCTTGGAGAATGGTATGAAAAAGGAAAAATTTTGATATTTGTACAATCACAGGACAAATGTGATGCTTTATTTAGAGATCTGCTTAAGCATGGATATCCTTGTCTCTCACTTCATGGGGCCAAAGATCAAACAGATCGTGAGTCCACCATAGCTGATTTTAAGAGCAATGTTTGTAATTTGTTGATAGCAACCAGTGTTGCTGCCAGAGGGCTAGATGTCAAGGAGCTTGAACTGGTGATAAATTTTGATGTCCCAAATCACTATGAGGACTATGTTCACCGTGTTGGACGTACTGGCCGTGCTGGCCGGAAAGGCTGTGCTATAACTTTTATCTCTGAGGAAGATGCTAGATATGCTCCAGATCTTGTGAAAGCATTGGAACTTTCTGAGCAAGTTGTTCCAGATGACTTGAAATCTCTTGCTGATAATTTTATGTCAAAAGTAAATCAGGGACTTGCTCAAGCCCATGGGACTGGTTATGGGGGAAGTGGCTTTAAATTTAATGTAGAGGAAGATGAAGTAAGGAGAGCGGCAAAGAAAGCACAGGCCAAAGAATATGGTTTTGAGGAAGACAAGTCAGATTCAGAAGATGAAGATGAAGGTATTCGAAAAGCAGGGGGTGATATCTCTCAGCAGGCTGCTCTTGCTCAGATAGCTGCTATTGCTGCTGCCTCCAAAGCTACTACAGCAATGCAGACTCCTGCTTCTGCTGCCCAATTGCTTCCCAACGGTGGACTGCCTGTTGCTCTTCCAGGCGTCGGTGGTGTAGGTGCATTACCAGGAACAGCAGCAGTTGTGCCTGGGACTGGTCTGCCTCTTGTTGGCAGTGATGGGGCAGCTCGGGCTGCAGCACTTGCAGCTGCCATGAACTTACAGCATAACCTGGCAAAGATCCACGCTGATGCAATGCCTGAACACTATGAAGCAGAGTTGGAGATAAATGATTTTCCCCAGAATGCTAGATGGAAAGTCACCCACAAGGAAACGTTGGGCCCTATATCAGAGTGGACTGGAGCTGCGATTACTACCAGGGGTCAGTATTTCCCACCAGGAAAGAGATCTCAAATCAGGCATTATCACTCCCTGGAGGAAATCAGCAAGGCAGATATCAAGTTATATAAGCTTGAGAACTTAATCCCAACTCTAGGCTGTCTGGAAATTCCTTGTTGGAAGCAACTGCTACTATATACGTGCTTCCTTGCTACATCAGTGAACTCCTTATTACAGAGATCACTAGCCCTGCGCCTTCTGCTTTGTTGGCATGCTGCGTCACTGTTTCAAATCCGTAGTTGA

Protein Analysis

1384

Amino Acids

156.71

Weight (kDa)

6.44

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 738 - 909 2.2e-49 DEAD/DEAH box helicase
Helicase_C PF00271 949 - 1055 2.6e-29 Helicase conserved C-terminal domain
KH_12 PF23469 1261 - 1307 6e-08 KH-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
Acc36I ACCTGC 3 cut(s) 500, 1823, 2710
AccB1I GGYRCC 2 cut(s) 2145, 2377
AccBSI CCGCTC 3 cut(s) 1033, 1168, 3389
AclI AACGTT 2 cut(s) 8, 3845
AclWI GGATC 7 cut(s) 249, 262, 765, 1691, 1907, 2287, 3745
AcoI YGGCCR 2 cut(s) 3154, 3163
AcsI RAATTY 7 cut(s) 288, 2026, 2169, 2886, 3100, 3356, 4017
AcuI CTGAAG 4 cut(s) 549, 563, 635, 2519
AcyI GRCGYC 2 cut(s) 2063, 3615
AfaI GTAC 6 cut(s) 208, 869, 2304, 2527, 2901, 3151
AflII CTTAAG 1 cut(s) 2942
AhdI GACNNNNNGTC 1 cut(s) 1519
AjuI GAANNNNNNNTTGG 4 cut(s) 629, 661, 2754, 2786
Alw26I GTCTC 7 cut(s) 45, 277, 332, 1574, 2247, 2447, 2966
AlwI GGATC 7 cut(s) 249, 262, 765, 1691, 1907, 2287, 3745
AlwNI CAGNNNCTG 2 cut(s) 1676, 2230
Ama87I CYCGRG 1 cut(s) 3699
AoxI GGCC 7 cut(s) 49, 2357, 2976, 3154, 3163, 3405, 3850
ApaI GGGCCC 2 cut(s) 2361, 3854
ApoI RAATTY 7 cut(s) 288, 2026, 2169, 2886, 3100, 3356, 4017
ArsI GACNNNNNNTTYG 4 cut(s) 2621, 2653, 2659, 2691
AseI ATTAAT 1 cut(s) 1662
Asp700I GAANNNNTTC 1 cut(s) 3462
AspLEI GCGC 3 cut(s) 601, 607, 4104
AspS9I GGNCC 7 cut(s) 1894, 2329, 2357, 2358, 2976, 3850, 3851
AsuII TTCGAA 1 cut(s) 3466
AvaI CYCGRG 1 cut(s) 3699
AvaII GGWCC 2 cut(s) 1894, 2329
BaeGI GKGCMC 2 cut(s) 2361, 3854
BamHI GGATCC 1 cut(s) 254
BanI GGYRCC 2 cut(s) 2145, 2377
BanII GRGCYC 2 cut(s) 2361, 3854
BbsI GAAGAC 2 cut(s) 109, 3435
BbvCI CCTCAGC 2 cut(s) 1826, 2315
BccI CCATC 8 cut(s) 422, 1301, 1538, 1622, 1655, 2348, 3683, 3816
BceAI ACGGC 2 cut(s) 43, 3141
BcoDI GTCTC 7 cut(s) 45, 277, 332, 1574, 2247, 2447, 2966
BfaI CTAG 7 cut(s) 674, 717, 3071, 3207, 3819, 4004, 4094
BfmI CTRYAG 3 cut(s) 1677, 3543, 3705
BfoI RGCGCY 2 cut(s) 602, 608
BfrI CTTAAG 1 cut(s) 2942
BfuAI ACCTGC 3 cut(s) 500, 1823, 2710
BglI GCCNNNNNGGC 3 cut(s) 2365, 3162, 3171
BglII AGATCT 5 cut(s) 348, 2049, 2935, 3220, 3917
Bme18I GGWCC 2 cut(s) 1894, 2329
BmeRI GACNNNNNGTC 1 cut(s) 1519
BmeT110I CYCGRG 1 cut(s) 3699
BmgT120I GGNCC 7 cut(s) 1894, 2329, 2357, 2358, 2976, 3850, 3851
BmiI GGNNCC 8 cut(s) 256, 1764, 1895, 2147, 2359, 2379, 2977, 3852
BmsI GCATC 7 cut(s) 892, 1075, 1633, 1719, 2911, 3193, 3751
BpiI GAAGAC 2 cut(s) 109, 3435
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpmI CTGGAG 4 cut(s) 203, 3201, 3891, 3965
Bpu10I CCTNAGC 3 cut(s) 1826, 2223, 2315
Bpu14I TTCGAA 1 cut(s) 3466
BpuEI CTTGAG 5 cut(s) 1919, 2038, 2863, 3303, 4004
Bsa29I ATCGAT 1 cut(s) 141
BsaAI YACGTR 2 cut(s) 871, 4050
BsaBI GATNNNNATC 2 cut(s) 756, 1911
BsaHI GRCGYC 2 cut(s) 2063, 3615
BsaI GGTCTC 2 cut(s) 45, 2447
BsaXI ACNNNNNCTCC 4 cut(s) 1267, 1297, 1623, 1653
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 9 cut(s) 417, 2158, 2281, 3051, 3096, 3157, 3337, 3670, 3874
Bse3DI GCAATG 4 cut(s) 699, 3031, 3555, 3771
Bse8I GATNNNNATC 2 cut(s) 756, 1911
BseCI ATCGAT 1 cut(s) 141
BseJI GATNNNNATC 2 cut(s) 756, 1911
BseMI GCAATG 4 cut(s) 699, 3031, 3555, 3771
BseNI ACTGG 9 cut(s) 417, 2158, 2281, 3051, 3096, 3157, 3337, 3670, 3874
BseRI GAGGAG 9 cut(s) 754, 819, 875, 1156, 1345, 1391, 1394, 1444, 1447
BseSI GKGCMC 2 cut(s) 2361, 3854
BseYI CCCAGC 2 cut(s) 522, 2348
BshFI GGCC 7 cut(s) 51, 2359, 2978, 3156, 3165, 3407, 3852
BshNI GGYRCC 2 cut(s) 2145, 2377
BshVI ATCGAT 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 3699
BsiSI CCGG 2 cut(s) 75, 3166
BslFI GGGAC 7 cut(s) 986, 1316, 1907, 3095, 3324, 3343, 3676
BsmAI GTCTC 7 cut(s) 45, 277, 332, 1574, 2247, 2447, 2966
BsmFI GGGAC 7 cut(s) 986, 1316, 1907, 3095, 3324, 3343, 3676
BsmI GAATGC 2 cut(s) 1756, 3820
BsnI GGCC 7 cut(s) 51, 2359, 2978, 3156, 3165, 3407, 3852
Bso31I GGTCTC 2 cut(s) 45, 2447
BsoBI CYCGRG 1 cut(s) 3699
Bsp119I TTCGAA 1 cut(s) 3466
Bsp120I GGGCCC 2 cut(s) 2357, 3850
Bsp1286I GDGCHC 2 cut(s) 2361, 3854
Bsp1407I TGTACA 1 cut(s) 2899
Bsp19I CCATGG 1 cut(s) 3325
BspANI GGCC 7 cut(s) 51, 2359, 2978, 3156, 3165, 3407, 3852
BspDI ATCGAT 1 cut(s) 141
BspLI GGNNCC 8 cut(s) 256, 1764, 1895, 2147, 2359, 2379, 2977, 3852
BspMAI CTGCAG 2 cut(s) 1681, 3709
BspMI ACCTGC 3 cut(s) 500, 1823, 2710
BspPI GGATC 7 cut(s) 249, 262, 765, 1691, 1907, 2287, 3745
BspQI GCTCTTC 1 cut(s) 3612
BspT104I TTCGAA 1 cut(s) 3466
BspT107I GGYRCC 2 cut(s) 2145, 2377
BspTI CTTAAG 1 cut(s) 2942
BspTNI GGTCTC 2 cut(s) 45, 2447
BsrBI CCGCTC 3 cut(s) 1033, 1168, 3389
BsrDI GCAATG 4 cut(s) 699, 3031, 3555, 3771
BsrFI RCCGGY 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 2899
BsrI ACTGG 9 cut(s) 417, 2158, 2281, 3051, 3096, 3157, 3337, 3670, 3874
BssAI RCCGGY 1 cut(s) 74
BssNI GRCGYC 2 cut(s) 2063, 3615
BssT1I CCWWGG 3 cut(s) 117, 2430, 3325
Bst4CI ACNGT 8 cut(s) 17, 84, 1759, 2411, 2692, 3140, 3590, 4134
Bst6I CTCTTC 8 cut(s) 525, 611, 693, 1019, 1086, 1103, 1232, 3612
BstACI GRCGYC 2 cut(s) 2063, 3615
BstAFI CTTAAG 1 cut(s) 2942
BstAPI GCANNNNNTGC 1 cut(s) 3713
BstAUI TGTACA 1 cut(s) 2899
BstBAI YACGTR 2 cut(s) 871, 4050
BstBI TTCGAA 1 cut(s) 3466
BstC8I GCNNGC 8 cut(s) 327, 603, 1570, 2144, 2337, 3163, 3495, 4122
BstDSI CCRYGG 1 cut(s) 3325
BstH2I RGCGCY 2 cut(s) 602, 608
BstHHI GCGC 3 cut(s) 601, 607, 4104
BstMAI GTCTC 7 cut(s) 45, 277, 332, 1574, 2247, 2447, 2966
BstNSI RCATGY 1 cut(s) 4124
BstSFI CTRYAG 3 cut(s) 1677, 3543, 3705
BstSLI GKGCMC 2 cut(s) 2361, 3854
BstV2I GAAGAC 2 cut(s) 109, 3435
BstX2I RGATCY 7 cut(s) 254, 348, 2049, 2935, 3220, 3750, 3917
BstXI CCANNNNNNTGG 2 cut(s) 2437, 3332
BstYI RGATCY 7 cut(s) 254, 348, 2049, 2935, 3220, 3750, 3917
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 7 cut(s) 51, 2359, 2978, 3156, 3165, 3407, 3852
BsuTUI ATCGAT 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 3325
BtsI GCAGTG 2 cut(s) 2228, 3691
BtsIMutI CAGTG 8 cut(s) 146, 410, 2228, 2416, 3058, 3691, 4074, 4130
BveI ACCTGC 3 cut(s) 500, 1823, 2710
Cac8I GCNNGC 8 cut(s) 327, 603, 1570, 2144, 2337, 3163, 3495, 4122
CaiI CAGNNNCTG 2 cut(s) 1676, 2230
CfoI GCGC 3 cut(s) 601, 607, 4104
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 7 cut(s) 1894, 2329, 2357, 2358, 2976, 3850, 3851
ClaI ATCGAT 1 cut(s) 141
CseI GACGC 4 cut(s) 459, 2071, 3604, 4116
Csp6I GTAC 6 cut(s) 207, 868, 2303, 2526, 2900, 3150
CviQI GTAC 6 cut(s) 207, 868, 2303, 2526, 2900, 3150
DraI TTTAAA 1 cut(s) 3355
DrdI GACNNNNNNGTC 1 cut(s) 291
DriI GACNNNNNGTC 1 cut(s) 1519
DseDI GACNNNNNNGTC 1 cut(s) 291
EaeI YGGCCR 2 cut(s) 3154, 3163
Eam1104I CTCTTC 8 cut(s) 525, 611, 693, 1019, 1086, 1103, 1232, 3612
Eam1105I GACNNNNNGTC 1 cut(s) 1519
EarI CTCTTC 8 cut(s) 525, 611, 693, 1019, 1086, 1103, 1232, 3612
EciI GGCGGA 1 cut(s) 2790
Eco130I CCWWGG 3 cut(s) 117, 2430, 3325
Eco24I GRGCYC 2 cut(s) 2361, 3854
Eco31I GGTCTC 2 cut(s) 45, 2447
Eco32I GATATC 4 cut(s) 2416, 2954, 3484, 3967
Eco47I GGWCC 2 cut(s) 1894, 2329
Eco57I CTGAAG 4 cut(s) 549, 563, 635, 2519
Eco88I CYCGRG 1 cut(s) 3699
EcoO109I RGGNCCY 2 cut(s) 1894, 3851
EcoRV GATATC 4 cut(s) 2416, 2954, 3484, 3967
EcoT14I CCWWGG 3 cut(s) 117, 2430, 3325
EcoT38I GRGCYC 2 cut(s) 2361, 3854
ErhI CCWWGG 3 cut(s) 117, 2430, 3325
FaqI GGGAC 7 cut(s) 986, 1316, 1907, 3095, 3324, 3343, 3676
FauI CCCGC 3 cut(s) 29, 115, 2496
FriOI GRGCYC 2 cut(s) 2361, 3854
FspBI CTAG 7 cut(s) 674, 717, 3071, 3207, 3819, 4004, 4094
GlaI GCGC 3 cut(s) 600, 606, 4103
GsaI CCCAGC 2 cut(s) 526, 2352
GsuI CTGGAG 4 cut(s) 203, 3201, 3891, 3965
HaeII RGCGCY 2 cut(s) 602, 608
HaeIII GGCC 7 cut(s) 51, 2359, 2978, 3156, 3165, 3407, 3852
HapII CCGG 2 cut(s) 75, 3166
HgaI GACGC 4 cut(s) 459, 2071, 3604, 4116
HhaI GCGC 3 cut(s) 601, 607, 4104
Hin1I GRCGYC 2 cut(s) 2063, 3615
Hin6I GCGC 3 cut(s) 599, 605, 4102
HinP1I GCGC 3 cut(s) 599, 605, 4102
HincII GTYRAC 2 cut(s) 539, 1990
HindII GTYRAC 2 cut(s) 539, 1990
HindIII AAGCTT 2 cut(s) 1707, 3980
HpaII CCGG 2 cut(s) 75, 3166
Hpy99I CGWCG 2 cut(s) 831, 3620
HpyCH4III ACNGT 8 cut(s) 17, 84, 1759, 2411, 2692, 3140, 3590, 4134
HpyCH4IV ACGT 7 cut(s) 8, 870, 1075, 1593, 3148, 3845, 4049
HpySE526I ACGT 7 cut(s) 8, 870, 1075, 1593, 3148, 3845, 4049
Hsp92I GRCGYC 2 cut(s) 2063, 3615
HspAI GCGC 3 cut(s) 599, 605, 4102
LguI GCTCTTC 1 cut(s) 3612
LmnI GCTCC 7 cut(s) 1030, 1165, 1213, 2389, 3082, 3220, 3872
LweI GCATC 7 cut(s) 892, 1075, 1633, 1719, 2911, 3193, 3751
MaeI CTAG 7 cut(s) 674, 717, 3071, 3207, 3819, 4004, 4094
MaeII ACGT 7 cut(s) 8, 870, 1075, 1593, 3148, 3845, 4049
MaeIII GTNAC 7 cut(s) 264, 356, 577, 818, 2590, 3829, 4128
MbiI CCGCTC 3 cut(s) 1033, 1168, 3389
MfeI CAATTG 4 cut(s) 1770, 2093, 2807, 3575
MflI RGATCY 7 cut(s) 254, 348, 2049, 2935, 3220, 3750, 3917
MhlI GDGCHC 2 cut(s) 2361, 3854
MlyI GAGTC 8 cut(s) 63, 751, 823, 1017, 1531, 1874, 3008, 3550
MmeI TCCRAC 4 cut(s) 2248, 3124, 3771, 4007
MroXI GAANNNNTTC 1 cut(s) 3462
MseI TTAA 8 cut(s) 69, 1457, 1662, 2943, 3018, 3354, 3360, 3992
MslI CAYNNNNRTG 3 cut(s) 1176, 2240, 3759
MspA1I CMGCKG 4 cut(s) 33, 1673, 2339, 3719
MspCI CTTAAG 1 cut(s) 2942
MspI CCGG 2 cut(s) 75, 3166
MunI CAATTG 4 cut(s) 1770, 2093, 2807, 3575
Mva1269I GAATGC 2 cut(s) 1756, 3820
NcoI CCATGG 1 cut(s) 3325
NlaIV GGNNCC 8 cut(s) 256, 1764, 1895, 2147, 2359, 2379, 2977, 3852
NmeAIII GCCGAG 2 cut(s) 77, 2695
NmuCI GTSAC 4 cut(s) 577, 818, 3829, 4128
NspI RCATGY 1 cut(s) 4124
NspV TTCGAA 1 cut(s) 3466
PaeI GCATGC 1 cut(s) 4124
PciSI GCTCTTC 1 cut(s) 3612
PcsI WCGNNNNNNNCGW 3 cut(s) 823, 835, 3154
PctI GAATGC 2 cut(s) 1756, 3820
PdmI GAANNNNTTC 1 cut(s) 3462
PleI GAGTC 8 cut(s) 62, 750, 822, 1016, 1531, 1874, 3007, 3550
PpsI GAGTC 8 cut(s) 62, 750, 822, 1016, 1531, 1874, 3007, 3550
Ppu21I YACGTR 2 cut(s) 871, 4050
PpuMI RGGWCCY 1 cut(s) 1894
PshBI ATTAAT 1 cut(s) 1662
Psp1406I AACGTT 2 cut(s) 8, 3845
Psp5II RGGWCCY 1 cut(s) 1894
PspFI CCCAGC 2 cut(s) 522, 2348
PspN4I GGNNCC 8 cut(s) 256, 1764, 1895, 2147, 2359, 2379, 2977, 3852
PspOMI GGGCCC 2 cut(s) 2357, 3850
PspPI GGNCC 7 cut(s) 1894, 2329, 2357, 2358, 2976, 3850, 3851
PspPPI RGGWCCY 1 cut(s) 1894
PstI CTGCAG 2 cut(s) 1681, 3709
PstNI CAGNNNCTG 2 cut(s) 1676, 2230
PsuI RGATCY 7 cut(s) 254, 348, 2049, 2935, 3220, 3750, 3917
PvuII CAGCTG 3 cut(s) 1673, 2339, 3719
RsaI GTAC 6 cut(s) 208, 869, 2304, 2527, 2901, 3151
RsaNI GTAC 6 cut(s) 207, 868, 2303, 2526, 2900, 3150
RseI CAYNNNNRTG 3 cut(s) 1176, 2240, 3759
SapI GCTCTTC 1 cut(s) 3612
SaqAI TTAA 8 cut(s) 69, 1457, 1662, 2943, 3018, 3354, 3360, 3992
Sau96I GGNCC 7 cut(s) 1894, 2329, 2357, 2358, 2976, 3850, 3851
SchI GAGTC 8 cut(s) 63, 751, 823, 1017, 1531, 1874, 3008, 3550
SduI GDGCHC 2 cut(s) 2361, 3854
SfaNI GCATC 7 cut(s) 892, 1075, 1633, 1719, 2911, 3193, 3751
SfcI CTRYAG 3 cut(s) 1677, 3543, 3705
SfiI GGCCNNNNNGGCC 1 cut(s) 3162
SfuI TTCGAA 1 cut(s) 3466
SgrAI CRCCGGYG 1 cut(s) 74
SinI GGWCC 2 cut(s) 1894, 2329
SmiMI CAYNNNNRTG 3 cut(s) 1176, 2240, 3759
SmlI CTYRAG 6 cut(s) 1898, 2053, 2842, 2942, 3318, 3983
SmoI CTYRAG 6 cut(s) 1898, 2053, 2842, 2942, 3318, 3983
SphI GCATGC 1 cut(s) 4124
SspI AATATT 1 cut(s) 2671
SspMI CTAG 7 cut(s) 674, 717, 3071, 3207, 3819, 4004, 4094
StyI CCWWGG 3 cut(s) 117, 2430, 3325
TaaI ACNGT 8 cut(s) 17, 84, 1759, 2411, 2692, 3140, 3590, 4134
TaiI ACGT 7 cut(s) 11, 873, 1078, 1596, 3151, 3848, 4052
TatI WGTACW 4 cut(s) 206, 2302, 2525, 2899
TauI GCSGC 4 cut(s) 36, 1171, 1231, 3392
Tru1I TTAA 8 cut(s) 69, 1457, 1662, 2943, 3018, 3354, 3360, 3992
Tru9I TTAA 8 cut(s) 69, 1457, 1662, 2943, 3018, 3354, 3360, 3992
TscAI CASTG 8 cut(s) 153, 417, 2235, 2416, 3058, 3691, 4074, 4137
TseFI GTSAC 4 cut(s) 577, 818, 3829, 4128
Tsp45I GTSAC 4 cut(s) 577, 818, 3829, 4128
TspGWI ACGGA 5 cut(s) 33, 111, 1414, 2009, 4133
TspRI CASTG 8 cut(s) 153, 417, 2235, 2416, 3058, 3691, 4074, 4137
Vha464I CTTAAG 1 cut(s) 2942
VpaK11BI GGWCC 2 cut(s) 1894, 2329
VspI ATTAAT 1 cut(s) 1662
XapI RAATTY 7 cut(s) 288, 2026, 2169, 2886, 3100, 3356, 4017
XceI RCATGY 1 cut(s) 4124
XmnI GAANNNNTTC 1 cut(s) 3462
XspI CTAG 7 cut(s) 674, 717, 3071, 3207, 3819, 4004, 4094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.