Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Reverse (-)

2349492 .. 2351042

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1028200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATCCAGCCTTCATCTAGTTTCTCTTACCTATACGGAAGCAATTCAGTTGGTTGGAGTGATCAAATCCAATTCCGAACTCCACCAGCAGGAGGATCTGATGAACTCAAATTTCTTGCATTTGGCGACATGGGAAAGGCTCCTCGTGATTCTTGGGCGATGCATTACATTCAGCCAGGATCTCTTTCAGTGATTCAAGCTGTGGCCGATGAAATAAATTCCGGGAATGTAGACTCTATCTTCCACATTGGAGACATTAGTTATGCGGCTATGCCACAGGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

96

Amino Acids

10.32

Weight (kDa)

4.33

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	2 cut(s)	103, 187
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	110, 217
AfiI	CCNNNNNNNGG	2 cut(s)	89, 92
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	103, 187
AoxI	GGCC	1 cut(s)	204
ApoI	RAATTY	2 cut(s)	110, 217
Asp700I	GAANNNNTTC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	223
BauI	CACGAG	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	177, 223
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	177, 223
BmsI	GCATC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 92
BseBI	CCWGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	89, 92
BseRI	GAGGAG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	89, 92
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	206
Bsp143I	GATC	4 cut(s)	3, 61, 95, 179
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	103, 187
BssMI	GATC	4 cut(s)	3, 61, 95, 179
BssSI	CACGAG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	177
BstKTI	GATC	4 cut(s)	6, 64, 98, 182
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	4 cut(s)	3, 61, 95, 179
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	175, 221
BstX2I	RGATCY	2 cut(s)	95, 179
BstYI	RGATCY	2 cut(s)	95, 179
BsuRI	GGCC	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	195
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	6 cut(s)	10, 140, 175, 200, 206, 269
CviKI_1	RGCY	6 cut(s)	10, 140, 175, 200, 206, 269
DpnI	GATC	4 cut(s)	5, 63, 97, 181
DpnII	GATC	4 cut(s)	3, 61, 95, 179
EaeI	YGGCCR	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	165
FaeI	CATG	1 cut(s)	133
FaiI	YATR	4 cut(s)	34, 131, 264, 272
FatI	CATG	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	1 cut(s)	133
HinfI	GANTC	3 cut(s)	149, 193, 233
HpaII	CCGG	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	77, 100
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	119, 163
Hsp92II	CATG	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	3, 61, 95, 179
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	7 cut(s)	20, 75, 99, 162, 189, 235, 263
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	18
MalI	GATC	4 cut(s)	5, 63, 97, 181
MboI	GATC	4 cut(s)	3, 61, 95, 179
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	2 cut(s)	95, 179
MluCI	AATT	4 cut(s)	43, 71, 110, 217
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	86, 153
Mph1103I	ATGCAT	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	43
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	177, 223
MvaI	CCWGG	1 cut(s)	177
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	4 cut(s)	3, 61, 95, 179
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	149, 193
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	95, 179
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	4 cut(s)	3, 61, 95, 179
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	177, 223
SetI	ASST	2 cut(s)	33, 202
SfaNI	GCATC	1 cut(s)	150
Sse9I	AATT	4 cut(s)	43, 71, 110, 217
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	175, 221
TasI	AATT	4 cut(s)	43, 71, 110, 217
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	149, 193
TscAI	CASTG	1 cut(s)	195
TspDTI	ATGAA	2 cut(s)	117, 225
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	2 cut(s)	110, 217
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	43
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.