Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Forward (+)

42990010 .. 42998388

Gene Structure 8379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACGGATGAAATAAATTCCAGGAATGTAGACTCTGTCTTCCACATTGGAGATATAAGCTATGCCACTGGGTTTTTAGTTGAATGGGATTTTTTCCTTCACCAAATCAACCCTATTGCTTCTCGAGTTTCATACATGACAGCTATCGGGAACCATGAGAGGGACTATATAGACTCTGGATCAGTGTACATTCTTGCAGATTCAGGTGGGGAAGTTGGAGTTCCCTATGAGACTTACTTTCCAATGCCAACCCCAGCAAAGGATAAACCATGGTATTCCATAGAACAAGGAAGCGTCCACATCATGATGATTTCAACAGAGCATGACTGGACCAAAAATTCTGAGCAGGTAAAGATGATTAAGCACTGGTCTATAGTATTCTACAGCTGTGCACCGCACTTCTATTTGCATTTGATGTTTTTTTATATGCTCTTGCAGTATCAATGGATGAAAAAGGACATGGCTTCAGTTGATCGATCTAAAACTCCTTGGTTGATATTTATGGGGGCTCTGCTACTACAGAAAGTGCTTTTCCTCCACGCATTTCCTCAGCAAAAGTATGGCACACCAGAACAGGATGCACTGAGAAGGGATCTAACTATTAACAGGTATATGTCTTCTCCAAGAATTTGCCGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

213

Amino Acids

24.97

Weight (kDa)

6.49

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	2 cut(s)	395, 634
AclWI	GGATC	2 cut(s)	187, 600
AcsI	RAATTY	3 cut(s)	16, 337, 627
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	160, 259
AgsI	TTSAA	2 cut(s)	83, 315
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	60, 143, 387
AluI	AGCT	3 cut(s)	60, 143, 387
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	187, 600
Ama87I	CYCGRG	1 cut(s)	123
ApaLI	GTGCAC	1 cut(s)	390
ApoI	RAATTY	3 cut(s)	16, 337, 627
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	31, 609
Bbv12I	GWGCWC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	549
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	224
BfmI	CTRYAG	3 cut(s)	372, 382, 518
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	1 cut(s)	634
BlsI	GCNGC	1 cut(s)	635
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	22
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	568
BmuI	ACTGGG	1 cut(s)	78
BpiI	GAAGAC	2 cut(s)	31, 609
Bpu10I	CCTNAGC	1 cut(s)	549
Bsa29I	ATCGAT	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	269, 488
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 259
Bse1I	ACTGG	3 cut(s)	73, 332, 371
BseBI	CCWGG	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	475
BseDI	CCNNGG	2 cut(s)	269, 488
BseGI	GGATG	3 cut(s)	13, 453, 583
BseLI	CCNNNNNNNGG	2 cut(s)	160, 259
BseMII	CTCAG	3 cut(s)	333, 563, 575
BseNI	ACTGG	3 cut(s)	73, 332, 371
BseSI	GKGCMC	1 cut(s)	394
BseYI	CCCAGC	1 cut(s)	253
BshVI	ATCGAT	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	160, 259
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	394, 511
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	179, 472, 476, 592
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	2 cut(s)	395, 634
BspCNI	CTCAG	3 cut(s)	334, 562, 576
BspDI	ATCGAT	1 cut(s)	475
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	152
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	187, 600
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	3 cut(s)	73, 332, 371
BssECI	CCNNGG	2 cut(s)	269, 488
BssMI	GATC	4 cut(s)	179, 472, 476, 592
BssT1I	CCWWGG	2 cut(s)	269, 488
Bst2UI	CCWGG	1 cut(s)	22
BstAUI	TGTACA	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	342, 549, 584
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	3 cut(s)	13, 453, 583
BstKTI	GATC	4 cut(s)	182, 475, 479, 595
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	179, 472, 476, 592
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	3 cut(s)	372, 382, 518
BstSLI	GKGCMC	1 cut(s)	394
BstV2I	GAAGAC	2 cut(s)	31, 609
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
Bsu15I	ATCGAT	1 cut(s)	475
BsuTUI	ATCGAT	1 cut(s)	475
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	13, 453, 583
BtsIMutI	CAGTG	4 cut(s)	66, 189, 364, 581
BveI	ACCTGC	1 cut(s)	337
CciI	TCATGA	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	330
ClaI	ATCGAT	1 cut(s)	475
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	6 cut(s)	136, 155, 270, 304, 323, 460
CviJI	RGCY	5 cut(s)	60, 143, 387, 464, 509
CviKI_1	RGCY	5 cut(s)	60, 143, 387, 464, 509
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	342, 549, 584
DpnI	GATC	4 cut(s)	181, 474, 478, 594
DpnII	GATC	4 cut(s)	179, 472, 476, 592
Eco130I	CCWWGG	2 cut(s)	269, 488
Eco24I	GRGCYC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	269, 488
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	2 cut(s)	269, 488
FaeI	CATG	6 cut(s)	139, 158, 273, 307, 326, 463
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	6 cut(s)	135, 154, 269, 303, 322, 459
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	634
FokI	GGATG	3 cut(s)	20, 460, 590
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	1 cut(s)	634
GluI	GCNGC	1 cut(s)	634
GsaI	CCCAGC	1 cut(s)	257
HgaI	GACGC	1 cut(s)	283
Hin1II	CATG	6 cut(s)	139, 158, 273, 307, 326, 463
HinfI	GANTC	3 cut(s)	32, 173, 200
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	4 cut(s)	31, 187, 298, 392
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	4 cut(s)	123, 148, 177, 304
Hpy8I	GTNNAC	4 cut(s)	31, 187, 298, 392
HpyAV	CCTTC	2 cut(s)	107, 582
HpyCH4V	TGCA	5 cut(s)	197, 392, 409, 436, 581
HpyF3I	CTNAG	3 cut(s)	342, 549, 584
Hsp92II	CATG	6 cut(s)	139, 158, 273, 307, 326, 463
Kzo9I	GATC	4 cut(s)	179, 472, 476, 592
LweI	GCATC	1 cut(s)	568
MalI	GATC	4 cut(s)	181, 474, 478, 594
MboI	GATC	4 cut(s)	179, 472, 476, 592
MboII	GAAGA	2 cut(s)	31, 609
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	2 cut(s)	394, 511
MluCI	AATT	3 cut(s)	16, 337, 627
MlyI	GAGTC	2 cut(s)	26, 167
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	153, 545, 558
MseI	TTAA	2 cut(s)	360, 603
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	4 cut(s)	179, 472, 476, 592
NlaIII	CATG	6 cut(s)	139, 158, 273, 307, 326, 463
NlaIV	GGNNCC	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	123
PagI	TCATGA	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	200
PflFI	GACNNNGTC	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	635
PleI	GAGTC	2 cut(s)	26, 167
PpsI	GAGTC	2 cut(s)	26, 167
Psp6I	CCWGG	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	592
PsyI	GACNNNGTC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	387
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	360, 603
SatI	GCNGC	1 cut(s)	634
Sau3AI	GATC	4 cut(s)	179, 472, 476, 592
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	2 cut(s)	26, 167
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	394, 511
SetI	ASST	6 cut(s)	62, 145, 208, 351, 389, 611
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	3 cut(s)	372, 382, 518
Sfr274I	CTCGAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	330
SlaI	CTCGAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	3 cut(s)	16, 337, 627
SsiI	CCGC	2 cut(s)	395, 634
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	2 cut(s)	269, 488
TaqI	TCGA	2 cut(s)	124, 475
TasI	AATT	3 cut(s)	16, 337, 627
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	636
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	360, 603
Tru9I	TTAA	2 cut(s)	360, 603
TscAI	CASTG	4 cut(s)	73, 189, 371, 588
TspDTI	ATGAA	3 cut(s)	24, 120, 464
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	4 cut(s)	73, 189, 371, 588
Tth111I	GACNNNGTC	1 cut(s)	35
VneI	GTGCAC	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	3 cut(s)	16, 337, 627
XhoI	CTCGAG	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.