Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Reverse (-)

2440918 .. 2441744

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1029100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCAACCTCAGCAAAGGAAAAGCCATGGTATTCCATAGAACAAGCAAGTGTTCACATTACGGTGACTTCAACAGAGCATGACTGGTCCACAAATTCTGAGCAGCGAACTTGTGCGGTTTATAAGAGTGAATGCAAACGATTGCCTCAAAAAGATGAAAATGGGATCGACACATATGATCATAGCAACTGCAGTGCCCCAGTGCACGCTGTAATTGGTATGGCTGGCTTTACCTTGGACGGGTTCTCAAGTGGTATTTCTGAATTTGGTTATCTAAGAGGATATGCGACAAAGAAAGAGATGAAATTAGAGCTTGTGAATGCAGATACAAGAAAGGTTGAAGACAGATTCCACATTACAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

122

Amino Acids

13.64

Weight (kDa)

6.19

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	123
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	94, 263
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	72, 341
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
Alw21I	GWGCWC	1 cut(s)	207
Alw44I	GTGCAC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	173
ApaLI	GTGCAC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	2 cut(s)	94, 263
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	87
BaeGI	GKGCMC	2 cut(s)	199, 207
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	26, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	89, 200
BseDI	CCNNGG	2 cut(s)	26, 234
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	24, 90
BseNI	ACTGG	2 cut(s)	89, 200
BseSI	GKGCMC	2 cut(s)	199, 207
BseXI	GCAGC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmI	GAATGC	2 cut(s)	137, 325
Bsp1286I	GDGCHC	2 cut(s)	199, 207
Bsp143I	GATC	2 cut(s)	165, 178
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	23, 91
BspMAI	CTGCAG	1 cut(s)	194
BspPI	GGATC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	89, 200
BssECI	CCNNGG	2 cut(s)	26, 234
BssMI	GATC	2 cut(s)	165, 178
BssT1I	CCWWGG	2 cut(s)	26, 234
Bst4CI	ACNGT	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	207, 226
BstDEI	CTNAG	3 cut(s)	10, 99, 275
BstDSI	CCRYGG	1 cut(s)	26
BstKTI	GATC	2 cut(s)	168, 181
BstMBI	GATC	2 cut(s)	165, 178
BstSFI	CTRYAG	1 cut(s)	190
BstSLI	GKGCMC	2 cut(s)	199, 207
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	199, 207
Cac8I	GCNNGC	2 cut(s)	207, 226
Cfr13I	GGNCC	1 cut(s)	87
CviAII	CATG	2 cut(s)	27, 80
CviJI	RGCY	4 cut(s)	25, 224, 228, 313
CviKI_1	RGCY	4 cut(s)	25, 224, 228, 313
DdeI	CTNAG	3 cut(s)	10, 99, 275
DpnI	GATC	2 cut(s)	167, 180
DpnII	GATC	2 cut(s)	165, 178
Eco130I	CCWWGG	2 cut(s)	26, 234
Eco47I	GGWCC	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	26, 234
ErhI	CCWWGG	2 cut(s)	26, 234
FaeI	CATG	2 cut(s)	30, 83
FaiI	YATR	9 cut(s)	28, 38, 81, 123, 175, 177, 183, 221, 285
FatI	CATG	2 cut(s)	26, 79
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	30, 83
HinfI	GANTC	1 cut(s)	348
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	3 cut(s)	55, 90, 205
Hpy188I	TCNGA	2 cut(s)	100, 262
Hpy8I	GTNNAC	3 cut(s)	55, 90, 205
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	4 cut(s)	135, 192, 205, 323
HpyF3I	CTNAG	3 cut(s)	10, 99, 275
Hsp92II	CATG	2 cut(s)	30, 83
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	165, 178
LpnPI	CCDG	3 cut(s)	70, 210, 213
Lsp1109I	GCAGC	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	167, 180
MboI	GATC	2 cut(s)	165, 178
MboII	GAAGA	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	199, 207
MluCI	AATT	4 cut(s)	94, 213, 263, 305
MnlI	CCTC	3 cut(s)	19, 156, 272
MslI	CAYNNNNRTG	1 cut(s)	62
Mva1269I	GAATGC	2 cut(s)	137, 325
NcoI	CCATGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	2 cut(s)	165, 178
NlaIII	CATG	2 cut(s)	30, 83
NmuCI	GTSAC	1 cut(s)	64
PctI	GAATGC	2 cut(s)	137, 325
PfeI	GAWTC	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	62
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	2 cut(s)	165, 178
Sau96I	GGNCC	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	199, 207
SetI	ASST	4 cut(s)	11, 236, 315, 339
SfcI	CTRYAG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	4 cut(s)	94, 213, 263, 305
SsiI	CCGC	1 cut(s)	116
StyI	CCWWGG	2 cut(s)	26, 234
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	168
TasI	AATT	4 cut(s)	94, 213, 263, 305
TfiI	GAWTC	1 cut(s)	348
TscAI	CASTG	2 cut(s)	199, 207
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	171, 317
TspRI	CASTG	2 cut(s)	199, 207
VneI	GTGCAC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	87
XapI	RAATTY	2 cut(s)	94, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.