Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Forward (+)

41987409 .. 41991247

Gene Structure 3839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG283500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGAAAGGCTCCTCGTGATTCTTCTGTCGAGCATTATATTCAGCCAGGATCCCTCTCAGTGATTGAGGCCGTGACGGATGAAATAAATTCCAGGAATGTAGACTCTGTCTTCCACATTGGAGATATAAGCTATGCCACTGGGTTTTTAGTTGAATGGGATTTTTTCCTTCACCAAATCAACCCTATTGCTTCTCGAGTTTCATACATGACAGCTATCGGGAACCATAAGAGGGACTATATAGACTCTGGATCAGTGTACATTCTTGCAGATTCAGGTGGGGAAGTTGGAGTTCCCTATGAGACTTACTTTCCAATGCCAACCCCAGCAAAGGATAAACCATGGTATTCCATAGAACGAGGAAGCGTCCACATCACGATGATTTCAACAGAGCATGACTGGACCAAAAATTCTGAGCAGTATCAATGGATGAAAAAGGACATGGCTTCAGTTGATCGATCTAAAACTCCTTGGTTGATATTTATGGGGCATAGACCAATGTATACATCTGCCCCTGGATTCCTGAGTGTTGATGAGAAATTCGTTGACAAAGTTGAACCATTACTTCTGGCAAGCAAAGTTGATCTGGCGCTCAACTACAGTGCCCCAGTGCAAGCCATAATTGGAATGGCTGGCTTTTCCTTGGACAAGTTTCCCAGTGCTATTAACAATAGTTGGAGTTTATCAAGGCATTCTGAATATGGTTATCTCAGAGCGCATGCAACAAGGACAGATATCAAATTAGAGTTTGTGAATGCAGACACAAGAAAAGTTGACGACAGCTTCCACATTACAAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

267

Amino Acids

30.1

Weight (kDa)

5.78

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	15 - 172	1.2e-09	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	202 - 261	6.2e-11	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	102, 503
AclWI	GGATC	3 cut(s)	45, 58, 259
AcsI	RAATTY	3 cut(s)	88, 409, 539
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	232, 331
AgsI	TTSAA	3 cut(s)	155, 387, 557
AjnI	CCWGG	3 cut(s)	46, 92, 514
AluBI	AGCT	3 cut(s)	132, 215, 783
AluI	AGCT	3 cut(s)	132, 215, 783
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	3 cut(s)	45, 58, 259
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	1 cut(s)	69
ApoI	RAATTY	3 cut(s)	88, 409, 539
AspLEI	GCGC	2 cut(s)	592, 718
AspS9I	GGNCC	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	402
BaeGI	GKGCMC	1 cut(s)	607
BamHI	GGATCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	3 cut(s)	48, 94, 516
BcoDI	GTCTC	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	598
BfoI	RGCGCY	1 cut(s)	593
Bme1390I	CCNGG	3 cut(s)	48, 94, 516
Bme18I	GGWCC	1 cut(s)	402
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	402
BmiI	GGNNCC	3 cut(s)	12, 52, 224
BmrFI	CCNGG	3 cut(s)	48, 94, 516
BmrI	ACTGGG	3 cut(s)	150, 602, 651
BmuI	ACTGGG	3 cut(s)	150, 602, 651
BpiI	GAAGAC	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	457
BsaJI	CCNNGG	4 cut(s)	341, 470, 514, 642
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 331
Bse1I	ACTGG	4 cut(s)	145, 404, 608, 657
BseBI	CCWGG	3 cut(s)	48, 94, 516
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	4 cut(s)	341, 470, 514, 642
BseGI	GGATG	2 cut(s)	85, 435
BseLI	CCNNNNNNNGG	2 cut(s)	232, 331
BseMII	CTCAG	4 cut(s)	72, 405, 515, 724
BseNI	ACTGG	4 cut(s)	145, 404, 608, 657
BseSI	GKGCMC	1 cut(s)	607
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	457
BsiHKCI	CYCGRG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	232, 331
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	2 cut(s)	691, 760
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	5 cut(s)	50, 251, 454, 458, 583
Bsp19I	CCATGG	1 cut(s)	341
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	4 cut(s)	71, 406, 516, 723
BspDI	ATCGAT	1 cut(s)	457
BspLI	GGNNCC	3 cut(s)	12, 52, 224
BspPI	GGATC	3 cut(s)	45, 58, 259
BsrGI	TGTACA	1 cut(s)	258
BsrI	ACTGG	4 cut(s)	145, 404, 608, 657
BssECI	CCNNGG	4 cut(s)	341, 470, 514, 642
BssMI	GATC	5 cut(s)	50, 251, 454, 458, 583
BssNAI	GTATAC	1 cut(s)	504
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	3 cut(s)	341, 470, 642
Bst1107I	GTATAC	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	3 cut(s)	48, 94, 516
Bst4CI	ACNGT	1 cut(s)	602
BstAUI	TGTACA	1 cut(s)	258
BstC8I	GCNNGC	4 cut(s)	574, 615, 634, 720
BstDEI	CTNAG	4 cut(s)	58, 414, 524, 710
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	85, 435
BstH2I	RGCGCY	1 cut(s)	593
BstHHI	GCGC	2 cut(s)	592, 718
BstKTI	GATC	5 cut(s)	53, 254, 457, 461, 586
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	5 cut(s)	50, 251, 454, 458, 583
BstNI	CCWGG	3 cut(s)	48, 94, 516
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	3 cut(s)	46, 92, 514
BstSFI	CTRYAG	1 cut(s)	598
BstSLI	GKGCMC	1 cut(s)	607
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BstZ17I	GTATAC	1 cut(s)	504
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	85, 435
BtsIMutI	CAGTG	6 cut(s)	66, 138, 261, 607, 615, 664
Cac8I	GCNNGC	4 cut(s)	574, 615, 634, 720
CfoI	GCGC	2 cut(s)	592, 718
Cfr13I	GGNCC	1 cut(s)	402
ClaI	ATCGAT	1 cut(s)	457
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	5 cut(s)	208, 342, 395, 442, 719
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	4 cut(s)	58, 414, 524, 710
DpnI	GATC	5 cut(s)	52, 253, 456, 460, 585
DpnII	GATC	5 cut(s)	50, 251, 454, 458, 583
Eco130I	CCWWGG	3 cut(s)	341, 470, 642
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	195
EcoRII	CCWGG	3 cut(s)	46, 92, 514
EcoRV	GATATC	1 cut(s)	736
EcoT14I	CCWWGG	3 cut(s)	341, 470, 642
ErhI	CCWWGG	3 cut(s)	341, 470, 642
FaeI	CATG	5 cut(s)	211, 345, 398, 445, 722
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	5 cut(s)	207, 341, 394, 441, 718
FblI	GTMKAC	2 cut(s)	102, 503
FokI	GGATG	2 cut(s)	92, 442
GlaI	GCGC	2 cut(s)	591, 717
GsaI	CCCAGC	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	593
HaeIII	GGCC	1 cut(s)	71
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	2 cut(s)	592, 718
Hin1II	CATG	5 cut(s)	211, 345, 398, 445, 722
Hin6I	GCGC	2 cut(s)	590, 716
HinP1I	GCGC	2 cut(s)	590, 716
HincII	GTYRAC	2 cut(s)	547, 775
HindII	GTYRAC	2 cut(s)	547, 775
HinfI	GANTC	5 cut(s)	20, 104, 245, 272, 519
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	6 cut(s)	103, 259, 370, 504, 547, 775
Hpy188I	TCNGA	3 cut(s)	415, 697, 713
Hpy188III	TCNNGA	6 cut(s)	17, 195, 220, 249, 376, 523
Hpy8I	GTNNAC	6 cut(s)	103, 259, 370, 504, 547, 775
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	602
HpyCH4V	TGCA	4 cut(s)	269, 613, 722, 758
HpyF3I	CTNAG	4 cut(s)	58, 414, 524, 710
Hsp92II	CATG	5 cut(s)	211, 345, 398, 445, 722
HspAI	GCGC	2 cut(s)	590, 716
Kzo9I	GATC	5 cut(s)	50, 251, 454, 458, 583
LmnI	GCTCC	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	5 cut(s)	52, 253, 456, 460, 585
MboI	GATC	5 cut(s)	50, 251, 454, 458, 583
MboII	GAAGA	2 cut(s)	15, 103
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	5 cut(s)	88, 409, 539, 621, 740
MlyI	GAGTC	2 cut(s)	98, 239
MmeI	TCCRAC	2 cut(s)	268, 656
MnlI	CCTC	5 cut(s)	24, 61, 65, 225, 353
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	1 cut(s)	377
MspR9I	CCNGG	3 cut(s)	48, 94, 516
Mva1269I	GAATGC	2 cut(s)	691, 760
MvaI	CCWGG	3 cut(s)	48, 94, 516
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	5 cut(s)	50, 251, 454, 458, 583
NlaIII	CATG	5 cut(s)	211, 345, 398, 445, 722
NlaIV	GGNNCC	3 cut(s)	12, 52, 224
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	722
PaeI	GCATGC	1 cut(s)	722
PaeR7I	CTCGAG	1 cut(s)	195
PctI	GAATGC	2 cut(s)	691, 760
PfeI	GAWTC	3 cut(s)	20, 272, 519
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	92
PleI	GAGTC	2 cut(s)	98, 239
PpsI	GAGTC	2 cut(s)	98, 239
Psp6I	CCWGG	3 cut(s)	46, 92, 514
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	3 cut(s)	46, 92, 514
PspN4I	GGNNCC	3 cut(s)	12, 52, 224
PspPI	GGNCC	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	50
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	666
Sau3AI	GATC	5 cut(s)	50, 251, 454, 458, 583
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	2 cut(s)	98, 239
ScrFI	CCNGG	3 cut(s)	48, 94, 516
SduI	GDGCHC	1 cut(s)	607
SetI	ASST	4 cut(s)	134, 217, 280, 785
SfcI	CTRYAG	1 cut(s)	598
Sfr274I	CTCGAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	402
SlaI	CTCGAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
SphI	GCATGC	1 cut(s)	722
Sse9I	AATT	5 cut(s)	88, 409, 539, 621, 740
StyD4I	CCNGG	3 cut(s)	46, 92, 514
StyI	CCWWGG	3 cut(s)	341, 470, 642
TaaI	ACNGT	1 cut(s)	602
TaqI	TCGA	3 cut(s)	30, 196, 457
TasI	AATT	5 cut(s)	88, 409, 539, 621, 740
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	3 cut(s)	20, 272, 519
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	6 cut(s)	66, 145, 261, 607, 615, 664
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	96, 192, 446
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	6 cut(s)	66, 145, 261, 607, 615, 664
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	3 cut(s)	88, 409, 539
XceI	RCATGY	1 cut(s)	722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XhoI	CTCGAG	1 cut(s)	195
XmiI	GTMKAC	2 cut(s)	102, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.