Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000361.1

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Reverse (-)

88223 .. 92979

Gene Structure 4757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000361.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgctcatgcctccgcggtacccccccctcacgagctctaacgctcaagccttccggcacccccgagcttccccctcacgagctctccacctatgccttcccggcaaccccgagctctcagctcatgccttcccggcaaccccgagctctcagctcatgccttcccgctccttctccaacctgagctgttctctgcgttcagctctttctttctcgctcttctctgaaaccctagcgctctcctcccttgcctgctctctttccacggctactgtctctccctcattgaactactgcttccgtcccctcacctgcgccatcgcctctgccggtgcttctcttgcaacgccaccacgtcgttgctcagagatacgaaccccaactggtccaacctgcctccaaggagtttatccttctcgattggtggactatatagaatctggatcagtgtacattcttgcagattcaggtggggaagttggagttccctatgagacttactttccctatgagacttactttccaatgccaaccccagcaaaggataaaccatggtattccatagaacaaggaagcgtccacatcacgatgatttcaacaaagcatgactggaccaaaaattctgagcagtatcaatggatgaaaagggacatggcttcagttgatcgatctgaaactccttggttgatatttatggggcatagaccaatgtatacatctgcccctggattcctgagtgttgatgagaaattcgttgacaaagttgaaccattacttctggcaagcaaagtaacatcccagaccttcacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

270

Amino Acids

29.76

Weight (kDa)

8.14

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	2 cut(s)	320, 401
Acc65I	GGTACC	1 cut(s)	18
AccB1I	GGYRCC	2 cut(s)	18, 57
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	713
AccII	CGCG	1 cut(s)	16
AciI	CCGC	3 cut(s)	14, 16, 166
AclWI	GGATC	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	619, 749
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	2 cut(s)	20, 452
AfeI	AGCGCT	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	541
AgsI	TTSAA	3 cut(s)	289, 597, 767
AjiI	CACGTC	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	724
AluBI	AGCT	9 cut(s)	36, 68, 83, 115, 122, 147, 154, 186, 203
AluI	AGCT	9 cut(s)	36, 68, 83, 115, 122, 147, 154, 186, 203
Alw21I	GWGCWC	4 cut(s)	38, 85, 117, 149
Alw26I	GTCTC	3 cut(s)	280, 488, 506
AlwI	GGATC	1 cut(s)	451
Ama87I	CYCGRG	3 cut(s)	63, 110, 142
Aor51HI	AGCGCT	1 cut(s)	237
ApoI	RAATTY	2 cut(s)	619, 749
Asp718I	GGTACC	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	238, 317
AspS9I	GGNCC	2 cut(s)	386, 612
AsuC2I	CCSGG	2 cut(s)	102, 134
AsuHPI	GGTGA	2 cut(s)	301, 799
AvaI	CYCGRG	3 cut(s)	63, 110, 142
AvaII	GGWCC	2 cut(s)	386, 612
BanI	GGYRCC	2 cut(s)	18, 57
BanII	GRGCYC	4 cut(s)	38, 85, 117, 149
BauI	CACGAG	2 cut(s)	31, 78
Bbv12I	GWGCWC	4 cut(s)	38, 85, 117, 149
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	726
BcnI	CCSGG	2 cut(s)	102, 134
BcoDI	GTCTC	3 cut(s)	280, 488, 506
BfaI	CTAG	2 cut(s)	233, 811
BfoI	RGCGCY	1 cut(s)	239
BfuAI	ACCTGC	2 cut(s)	320, 401
BglI	GCCNNNNNGGC	2 cut(s)	102, 134
Bme1390I	CCNGG	3 cut(s)	102, 134, 726
Bme18I	GGWCC	2 cut(s)	386, 612
BmeT110I	CYCGRG	3 cut(s)	63, 110, 142
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	386, 612
BmiI	GGNNCC	2 cut(s)	20, 59
BmrFI	CCNGG	3 cut(s)	102, 134, 726
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	30
BpuMI	CCSGG	2 cut(s)	102, 134
Bsa29I	ATCGAT	1 cut(s)	667
BsaJI	CCNNGG	6 cut(s)	14, 264, 400, 551, 680, 724
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 262, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	388, 614
BseBI	CCWGG	1 cut(s)	726
BseCI	ATCGAT	1 cut(s)	667
BseDI	CCNNGG	6 cut(s)	14, 264, 400, 551, 680, 724
BseGI	GGATG	2 cut(s)	645, 794
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMII	CTCAG	6 cut(s)	132, 164, 173, 378, 615, 725
BseNI	ACTGG	2 cut(s)	388, 614
BseRI	GAGGAG	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	535
Bsh1236I	CGCG	1 cut(s)	16
BshNI	GGYRCC	2 cut(s)	18, 57
BshVI	ATCGAT	1 cut(s)	667
BsiHKAI	GWGCWC	4 cut(s)	38, 85, 117, 149
BsiHKCI	CYCGRG	3 cut(s)	63, 110, 142
BsiSI	CCGG	4 cut(s)	55, 102, 134, 330
BslFI	GGGAC	2 cut(s)	288, 662
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	3 cut(s)	280, 488, 506
BsmFI	GGGAC	2 cut(s)	288, 662
BsoBI	CYCGRG	3 cut(s)	63, 110, 142
Bsp1286I	GDGCHC	4 cut(s)	38, 85, 117, 149
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	3 cut(s)	443, 664, 668
Bsp19I	CCATGG	1 cut(s)	551
BspACI	CCGC	3 cut(s)	14, 16, 166
BspCNI	CTCAG	6 cut(s)	131, 163, 174, 377, 616, 726
BspDI	ATCGAT	1 cut(s)	667
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	20, 59
BspMI	ACCTGC	2 cut(s)	320, 401
BspPI	GGATC	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	224
BspT107I	GGYRCC	2 cut(s)	18, 57
BsrBI	CCGCTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	329
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	388, 614
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	6 cut(s)	14, 264, 400, 551, 680, 724
BssMI	GATC	3 cut(s)	443, 664, 668
BssNAI	GTATAC	1 cut(s)	714
BssSI	CACGAG	2 cut(s)	31, 78
BssT1I	CCWWGG	3 cut(s)	400, 551, 680
Bst1107I	GTATAC	1 cut(s)	714
Bst2BI	CACGAG	2 cut(s)	31, 78
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	224
BstAUI	TGTACA	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	253, 784
BstDEI	CTNAG	6 cut(s)	118, 150, 182, 364, 624, 734
BstDSI	CCRYGG	3 cut(s)	14, 264, 551
BstF5I	GGATG	2 cut(s)	645, 794
BstFNI	CGCG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	238, 317
BstKTI	GATC	3 cut(s)	446, 667, 671
BstMAI	GTCTC	3 cut(s)	280, 488, 506
BstMBI	GATC	3 cut(s)	443, 664, 668
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 134, 341
BstNI	CCWGG	1 cut(s)	726
BstSCI	CCNGG	3 cut(s)	100, 132, 724
BstUI	CGCG	1 cut(s)	16
BstZ17I	GTATAC	1 cut(s)	714
Bsu15I	ATCGAT	1 cut(s)	667
BsuTUI	ATCGAT	1 cut(s)	667
BtgI	CCRYGG	3 cut(s)	14, 264, 551
BtgZI	GCGATG	1 cut(s)	304
BtrI	CACGTC	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	645, 794
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	2 cut(s)	320, 401
Cac8I	GCNNGC	2 cut(s)	253, 784
CfoI	GCGC	2 cut(s)	238, 317
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	386, 612
Cfr42I	CCGCGG	1 cut(s)	17
ClaI	ATCGAT	1 cut(s)	667
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	2 cut(s)	19, 451
CviAII	CATG	6 cut(s)	7, 125, 157, 552, 605, 652
CviQI	GTAC	2 cut(s)	19, 451
DdeI	CTNAG	6 cut(s)	118, 150, 182, 364, 624, 734
DpnI	GATC	3 cut(s)	445, 666, 670
DpnII	GATC	3 cut(s)	443, 664, 668
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Ecl136II	GAGCTC	4 cut(s)	36, 83, 115, 147
Eco130I	CCWWGG	3 cut(s)	400, 551, 680
Eco24I	GRGCYC	4 cut(s)	38, 85, 117, 149
Eco47I	GGWCC	2 cut(s)	386, 612
Eco47III	AGCGCT	1 cut(s)	237
Eco53kI	GAGCTC	4 cut(s)	36, 83, 115, 147
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	3 cut(s)	63, 110, 142
EcoICRI	GAGCTC	4 cut(s)	36, 83, 115, 147
EcoRII	CCWGG	1 cut(s)	724
EcoT14I	CCWWGG	3 cut(s)	400, 551, 680
EcoT38I	GRGCYC	4 cut(s)	38, 85, 117, 149
ErhI	CCWWGG	3 cut(s)	400, 551, 680
FaeI	CATG	6 cut(s)	10, 128, 160, 555, 608, 655
FaqI	GGGAC	2 cut(s)	288, 662
FatI	CATG	6 cut(s)	6, 124, 156, 551, 604, 651
FauI	CCCGC	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	713
FokI	GGATG	2 cut(s)	652, 781
FriOI	GRGCYC	4 cut(s)	38, 85, 117, 149
FspBI	CTAG	2 cut(s)	233, 811
GlaI	GCGC	2 cut(s)	237, 316
GsaI	CCCAGC	1 cut(s)	539
HaeII	RGCGCY	1 cut(s)	239
HapII	CCGG	4 cut(s)	55, 102, 134, 330
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	2 cut(s)	238, 317
Hin1II	CATG	6 cut(s)	10, 128, 160, 555, 608, 655
Hin6I	GCGC	2 cut(s)	236, 315
HinP1I	GCGC	2 cut(s)	236, 315
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	3 cut(s)	437, 464, 729
HpaII	CCGG	4 cut(s)	55, 102, 134, 330
HphI	GGTGA	2 cut(s)	301, 799
Hpy166II	GTNNAC	5 cut(s)	427, 451, 580, 714, 757
Hpy188I	TCNGA	4 cut(s)	226, 367, 625, 673
Hpy188III	TCNNGA	6 cut(s)	31, 78, 417, 441, 586, 733
Hpy8I	GTNNAC	5 cut(s)	427, 451, 580, 714, 757
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	6 cut(s)	61, 107, 139, 171, 181, 423
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	2 cut(s)	344, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 134, 341
HpyF3I	CTNAG	6 cut(s)	118, 150, 182, 364, 624, 734
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	6 cut(s)	10, 128, 160, 555, 608, 655
HspAI	GCGC	2 cut(s)	236, 315
KpnI	GGTACC	1 cut(s)	22
KspI	CCGCGG	1 cut(s)	17
Kzo9I	GATC	3 cut(s)	443, 664, 668
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	173
MaeI	CTAG	2 cut(s)	233, 811
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	790
MalI	GATC	3 cut(s)	445, 666, 670
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	3 cut(s)	443, 664, 668
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	4 cut(s)	38, 85, 117, 149
MluCI	AATT	2 cut(s)	619, 749
MmeI	TCCRAC	3 cut(s)	201, 413, 460
MnlI	CCTC	8 cut(s)	21, 38, 85, 253, 292, 317, 334, 407
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	4 cut(s)	55, 102, 134, 330
MspR9I	CCNGG	3 cut(s)	102, 134, 726
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	3 cut(s)	102, 134, 341
NciI	CCSGG	2 cut(s)	102, 134
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	3 cut(s)	443, 664, 668
NlaIII	CATG	6 cut(s)	10, 128, 160, 555, 608, 655
NlaIV	GGNNCC	2 cut(s)	20, 59
PaqCI	CACCTGC	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	437, 464, 729
Psp124BI	GAGCTC	4 cut(s)	38, 85, 117, 149
Psp6I	CCWGG	1 cut(s)	724
PspFI	CCCAGC	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	2 cut(s)	20, 59
PspPI	GGNCC	2 cut(s)	386, 612
RsaI	GTAC	2 cut(s)	20, 452
RsaNI	GTAC	2 cut(s)	19, 451
RseI	CAYNNNNRTG	1 cut(s)	587
SacI	GAGCTC	4 cut(s)	38, 85, 117, 149
SacII	CCGCGG	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	224
Sau3AI	GATC	3 cut(s)	443, 664, 668
Sau96I	GGNCC	2 cut(s)	386, 612
ScrFI	CCNGG	3 cut(s)	102, 134, 726
SduI	GDGCHC	4 cut(s)	38, 85, 117, 149
Sfr303I	CCGCGG	1 cut(s)	17
SgrBI	CCGCGG	1 cut(s)	17
SinI	GGWCC	2 cut(s)	386, 612
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	619, 749
SsiI	CCGC	3 cut(s)	14, 16, 166
SspMI	CTAG	2 cut(s)	233, 811
SstI	GAGCTC	4 cut(s)	38, 85, 117, 149
StyD4I	CCNGG	3 cut(s)	100, 132, 724
StyI	CCWWGG	3 cut(s)	400, 551, 680
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	2 cut(s)	418, 667
TasI	AATT	2 cut(s)	619, 749
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	3 cut(s)	437, 464, 729
TscAI	CASTG	1 cut(s)	453
TspDTI	ATGAA	1 cut(s)	656
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	453
VpaK11BI	GGWCC	2 cut(s)	386, 612
XapI	RAATTY	2 cut(s)	619, 749
XmiI	GTMKAC	1 cut(s)	713
XspI	CTAG	2 cut(s)	233, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.