Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Reverse (-)

2369779 .. 2370474

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1028500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGACAGCGATAGGAAACCATGAGAGGGACTATATAGACACTGGATCAGTTTATATTTTACCAGATTCAGGTGGAGAATCTGGAGTCCCTTATGAGACTTACTTTCCTATGCCAACGTCAGCAAAGGATAAGCCATGGTATTCCATAGAACAAGCAAGTGTTCATATTACGGTGATTTCAACAGAGCATGACTGGTCCACAAATTCTGAGCAGGTAAAGATGAATCAGCACTTCTGCATTTGCTTAATCATATCATTAATTCAAGCAACTATACTCTCAGTTTATTCGATGCTTTTATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

101

Amino Acids

11.3

Weight (kDa)

4.69

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AclWI	GGATC	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	202
AfiI	CCNNNNNNNGG	2 cut(s)	25, 68
AgsI	TTSAA	2 cut(s)	180, 263
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	202
AseI	ATTAAT	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmsI	GCATC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 68
Bse1I	ACTGG	2 cut(s)	46, 197
BseDI	CCNNGG	1 cut(s)	134
BseLI	CCNNNNNNNGG	2 cut(s)	25, 68
BseMII	CTCAG	2 cut(s)	198, 291
BseNI	ACTGG	2 cut(s)	46, 197
BslFI	GGGAC	2 cut(s)	41, 71
BslI	CCNNNNNNNGG	2 cut(s)	25, 68
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	41, 71
Bsp143I	GATC	1 cut(s)	44
Bsp19I	CCATGG	1 cut(s)	134
BspCNI	CTCAG	2 cut(s)	199, 290
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	46, 197
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	207, 277
BstDSI	CCRYGG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	195
CviAII	CATG	3 cut(s)	20, 135, 188
CviJI	RGCY	1 cut(s)	133
CviKI_1	RGCY	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	207, 277
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	3 cut(s)	23, 138, 191
FaqI	GGGAC	2 cut(s)	41, 71
FatI	CATG	3 cut(s)	19, 134, 187
GsuI	CTGGAG	1 cut(s)	102
Hin1II	CATG	3 cut(s)	23, 138, 191
HinfI	GANTC	4 cut(s)	65, 77, 84, 223
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	2 cut(s)	207, 277
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	3 cut(s)	23, 138, 191
Kzo9I	GATC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	27, 54, 66, 75, 178, 197
LweI	GCATC	1 cut(s)	279
MaeII	ACGT	1 cut(s)	116
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MluCI	AATT	2 cut(s)	202, 258
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	1 cut(s)	18
MseI	TTAA	2 cut(s)	245, 257
NcoI	CCATGG	1 cut(s)	134
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	23, 138, 191
PfeI	GAWTC	3 cut(s)	65, 77, 223
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	245, 257
Sau3AI	GATC	1 cut(s)	44
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	93
SetI	ASST	3 cut(s)	73, 119, 216
SfaNI	GCATC	1 cut(s)	279
SinI	GGWCC	1 cut(s)	195
Sse9I	AATT	2 cut(s)	202, 258
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	287
TasI	AATT	2 cut(s)	202, 258
TfiI	GAWTC	3 cut(s)	65, 77, 223
Tru1I	TTAA	2 cut(s)	245, 257
Tru9I	TTAA	2 cut(s)	245, 257
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	152, 236
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	195
VspI	ATTAAT	1 cut(s)	257
XapI	RAATTY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.