Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Reverse (-)

33138591 .. 33140366

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008606

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAACTCAAATTTCTTGCATTTGGCGACATGGGAAAGGCTCCTTGTGATTCTTCTGTCGAGCATTATATTCAGGGACTATATAGACTCTGGATCAGTGTACATTCTTGCAGATTCAGGTGGGAAAGTTGGAGTTCCCTATGAGACTTACTTTCCAATGCCAACCCCAGCAAAGGATAAACCATGGTATTCCATAGAACAAGGAAGCATCCACATCACGATGATTTCAACAGAGCATGACTGGACCAAAAATTCTGAGCAGGTTGATCTGGCGCTGTTTGGTCATGTCCATAACTACAAGCGAACCTGCTCCATTTATAAGAGCCAATGCATGAAATTGCCTTGCAAAGATGAGGCTGGGATCGACACATATGATCACAGCAACTACAGTGCCCCAGTGCAAGCCATAATTGGAATGGCTGGCTTTTCCTTGGACAAGTTTCCCAGTGGTGTAAGTCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

155

Amino Acids

17.25

Weight (kDa)

5.8

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
Acc36I	ACCTGC	2 cut(s)	250, 314
AclWI	GGATC	2 cut(s)	100, 368
AcsI	RAATTY	2 cut(s)	10, 250
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	100, 368
ApoI	RAATTY	2 cut(s)	10, 250
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	275
BfuAI	ACCTGC	2 cut(s)	250, 314
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	41
BmrI	ACTGGG	2 cut(s)	389, 438
BmsI	GCATC	1 cut(s)	216
BmuI	ACTGGG	2 cut(s)	389, 438
BsaJI	CCNNGG	2 cut(s)	182, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	3 cut(s)	245, 395, 444
BseDI	CCNNGG	2 cut(s)	182, 429
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	245, 395, 444
BseSI	GKGCMC	1 cut(s)	394
BseYI	CCCAGC	2 cut(s)	166, 356
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	92, 265, 360, 373
Bsp19I	CCATGG	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	41
BspMI	ACCTGC	2 cut(s)	250, 314
BspPI	GGATC	2 cut(s)	100, 368
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	3 cut(s)	245, 395, 444
BssECI	CCNNGG	2 cut(s)	182, 429
BssMI	GATC	4 cut(s)	92, 265, 360, 373
BssT1I	CCWWGG	2 cut(s)	182, 429
Bst4CI	ACNGT	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	402, 421
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	4 cut(s)	95, 268, 363, 376
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	92, 265, 360, 373
BstSFI	CTRYAG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	4 cut(s)	102, 394, 402, 451
BveI	ACCTGC	2 cut(s)	250, 314
Cac8I	GCNNGC	2 cut(s)	402, 421
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	5 cut(s)	30, 183, 236, 284, 331
CviJI	RGCY	6 cut(s)	40, 324, 356, 404, 419, 423
CviKI_1	RGCY	6 cut(s)	40, 324, 356, 404, 419, 423
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	4 cut(s)	94, 267, 362, 375
DpnII	GATC	4 cut(s)	92, 265, 360, 373
Eco130I	CCWWGG	2 cut(s)	182, 429
Eco47I	GGWCC	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	182, 429
EcoT22I	ATGCAT	1 cut(s)	332
ErhI	CCWWGG	2 cut(s)	182, 429
FaeI	CATG	5 cut(s)	33, 186, 239, 287, 334
FalI	AAGNNNNNCTT	1 cut(s)	445
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	5 cut(s)	29, 182, 235, 283, 330
FauNDI	CATATG	1 cut(s)	370
FbaI	TGATCA	1 cut(s)	373
FokI	GGATG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	273
GsaI	CCCAGC	2 cut(s)	170, 360
HaeII	RGCGCY	1 cut(s)	275
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	5 cut(s)	33, 186, 239, 287, 334
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	3 cut(s)	49, 86, 113
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	3 cut(s)	90, 217, 462
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	5 cut(s)	19, 110, 330, 345, 400
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	33, 186, 239, 287, 334
HspAI	GCGC	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	92, 265, 360, 373
LmnI	GCTCC	2 cut(s)	45, 314
LweI	GCATC	1 cut(s)	216
MalI	GATC	4 cut(s)	94, 267, 362, 375
MboI	GATC	4 cut(s)	92, 265, 360, 373
MboII	GAAGA	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	4 cut(s)	10, 250, 335, 408
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	1 cut(s)	346
Mph1103I	ATGCAT	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	4 cut(s)	92, 265, 360, 373
NlaIII	CATG	5 cut(s)	33, 186, 239, 287, 334
NlaIV	GGNNCC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	49, 113
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PsiI	TTATAA	1 cut(s)	318
PspFI	CCCAGC	2 cut(s)	166, 356
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	243
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	218
Sau3AI	GATC	4 cut(s)	92, 265, 360, 373
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	3 cut(s)	121, 264, 308
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	4 cut(s)	10, 250, 335, 408
StyI	CCWWGG	2 cut(s)	182, 429
TaaI	ACNGT	1 cut(s)	389
TaqI	TCGA	2 cut(s)	59, 363
TasI	AATT	4 cut(s)	10, 250, 335, 408
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	49, 113
TscAI	CASTG	4 cut(s)	102, 394, 402, 451
TspDTI	ATGAA	2 cut(s)	17, 347
TspRI	CASTG	4 cut(s)	102, 394, 402, 451
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	2 cut(s)	10, 250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.