Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Reverse (-)

2362088 .. 2365556

Gene Structure 3469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1028400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGTGTCCACTTGTGGTGGTGCATTATCATTTCATGTTATCAACATCAGAACCGACATTGAATTTGTGTTGTTTTCCGGTGGATTTGAGGAACCTTGTATTCTCAAGAAGTCAAACCCTCTGAAATTTACCAATCCGAATAAGCCATTATATGGACATCTCTCAAGCATCGATTCAACTGGAACATCGATGAGATTAACATGGGTTAGTGGACATAAGGAACCTCAGCAAGTGCAATATGGCAACAGAAAAAAACAGACATCAGGAGTTACTACATTTTCACAAGACGATATGAAAAGTTCTGCTCTACCAAGTCCAGCCAAGGACTTCGGCTGGCATGATCCAGGCTTCATTCACACGGTAGTAATGAGAGGACTTAAGCCTTCATCTAGTTTCTCTTATAGATACGGAAGCGATTCAGTTGGTTGGAGTGATCAAATCCAATTCCGAACCCCACCAGCAGGAGGATCTGATGAACTCAAATTTCTTGCATTTGGCGACATGGGAAAGGCTCCTCGTGATTATTCGGCAATGCATTACATTCAGCCAGGATCTCTTTCAGTGATTCAAGCCGTGGCTGATGAAATAAATTCCGGGAATGTAGACTCTATCTTCCACATTGGAGACATTAGCTATGCCACAGGATTTTTAGTTGAATGGGATCTTTTCCTTCAACAAATCAGTCCAGTCGCTTCTCGAGTTTCTTACATGACAGCGATAGGAAACCATGAGAGGGACTATATAGACACTGGATCAGTTTATATTCTTCCAGATTCAGGTGGAGAATCTGGAGTTCCTTATGAGAATTACTTTCCTATGCCAACCTCAGCAAAGGATAAGCCATGGTATTCCATAGAACAAGCAAGTGTTCACATCACGGTGATTTCAACAGAGCATGACTGGTCCACAAATTCTGAGCAGTATCAATGGATGAGAAAGGACATGGCTTCAGTTGATCGATCTAAAACTCCTTGGTTGATTTTTATGGGGCATAGACCCATGTATTCCTCCTCACCTGGATTCCTCAATGTTGATAAAATATTTGTCAACGAGGTGGAACCATTACTGCTCGAGAGCAAAGTTGATTTAGTCCTATTTGGTCATGTCCATAACTACGAGAGAACTTGTGCGGTTTATAAGAGTGAATGCAAAGGATTGCCTCAAAAAAATGAAAATGGGATCGACACATATGATCATAGCAACTACAGTGCCCCAGTGCACACTGTAATTGGTATGGCTGGCTTTACCTTGGACGGGTTCTCAAGTGGTGTAAGATTTTCATACCGTTCTTTACATGGAATTGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

437

Amino Acids

48.48

Weight (kDa)

5.87

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_PAP	PF17808	2 - 45	1.4e-13	Fn3-like domain from Purple Acid Phosphatase
Pur_ac_phosph_N	PF16656	51 - 151	5.6e-16	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	160 - 372	1.8e-18	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1137
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	1 cut(s)	1130
AclWI	GGATC	6 cut(s)	335, 475, 559, 669, 760, 1187
AcsI	RAATTY	5 cut(s)	62, 125, 482, 589, 910
AcuI	CTGAAG	1 cut(s)	933
AfiI	CCNNNNNNNGG	6 cut(s)	152, 461, 464, 733, 776, 1254
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	6 cut(s)	62, 177, 569, 656, 674, 888
AjnI	CCWGG	3 cut(s)	343, 547, 1015
AluBI	AGCT	1 cut(s)	633
AluI	AGCT	1 cut(s)	633
Alw21I	GWGCWC	1 cut(s)	1221
Alw26I	GTCTC	1 cut(s)	618
Alw44I	GTGCAC	1 cut(s)	1217
AlwI	GGATC	6 cut(s)	335, 475, 559, 669, 760, 1187
Ama87I	CYCGRG	2 cut(s)	696, 1070
ApaLI	GTGCAC	1 cut(s)	1217
ApoI	RAATTY	5 cut(s)	62, 125, 482, 589, 910
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	903
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	892, 1005
AvaI	CYCGRG	2 cut(s)	696, 1070
AvaII	GGWCC	1 cut(s)	903
BaeGI	GKGCMC	2 cut(s)	1213, 1221
BauI	CACGAG	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	1221
BbvCI	CCTCAGC	2 cut(s)	225, 826
BceAI	ACGGC	1 cut(s)	557
BciT130I	CCWGG	3 cut(s)	345, 549, 1017
BclI	TGATCA	2 cut(s)	433, 1192
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	618
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	1204
BfrI	CTTAAG	1 cut(s)	377
Bme1390I	CCNGG	4 cut(s)	345, 549, 595, 1017
Bme18I	GGWCC	1 cut(s)	903
BmeT110I	CYCGRG	2 cut(s)	696, 1070
BmgT120I	GGNCC	1 cut(s)	903
BmiI	GGNNCC	4 cut(s)	93, 222, 513, 1059
BmrFI	CCNGG	4 cut(s)	345, 549, 595, 1017
BmrI	ACTGGG	1 cut(s)	1208
BmsI	GCATC	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	1208
BpmI	CTGGAG	1 cut(s)	810
Bpu10I	CCTNAGC	2 cut(s)	225, 826
BpuEI	CTTGAG	3 cut(s)	89, 148, 1246
BpuMI	CCSGG	1 cut(s)	595
Bsa29I	ATCGAT	3 cut(s)	171, 188, 958
BsaJI	CCNNGG	5 cut(s)	321, 573, 842, 971, 1248
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	6 cut(s)	152, 461, 464, 733, 776, 1254
Bse1I	ACTGG	5 cut(s)	184, 686, 754, 905, 1214
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	3 cut(s)	345, 549, 1017
BseCI	ATCGAT	3 cut(s)	171, 188, 958
BseDI	CCNNGG	5 cut(s)	321, 573, 842, 971, 1248
BseGI	GGATG	1 cut(s)	936
BseLI	CCNNNNNNNGG	6 cut(s)	152, 461, 464, 733, 776, 1254
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	3 cut(s)	239, 840, 906
BseNI	ACTGG	5 cut(s)	184, 686, 754, 905, 1214
BseRI	GAGGAG	2 cut(s)	504, 1000
BseSI	GKGCMC	2 cut(s)	1213, 1221
BshVI	ATCGAT	3 cut(s)	171, 188, 958
BsiHKAI	GWGCWC	1 cut(s)	1221
BsiHKCI	CYCGRG	2 cut(s)	696, 1070
BsiSI	CCGG	2 cut(s)	78, 594
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	6 cut(s)	152, 461, 464, 733, 776, 1254
BsmAI	GTCTC	1 cut(s)	618
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	1151
BsoBI	CYCGRG	2 cut(s)	696, 1070
Bsp1286I	GDGCHC	2 cut(s)	1213, 1221
Bsp19I	CCATGG	1 cut(s)	842
BspACI	CCGC	1 cut(s)	1130
BspCNI	CTCAG	3 cut(s)	238, 839, 907
BspDI	ATCGAT	3 cut(s)	171, 188, 958
BspLI	GGNNCC	4 cut(s)	93, 222, 513, 1059
BspPI	GGATC	6 cut(s)	335, 475, 559, 669, 760, 1187
BspTI	CTTAAG	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	5 cut(s)	184, 686, 754, 905, 1214
BssECI	CCNNGG	5 cut(s)	321, 573, 842, 971, 1248
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	4 cut(s)	321, 842, 971, 1248
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	3 cut(s)	345, 549, 1017
Bst4CI	ACNGT	5 cut(s)	361, 880, 1208, 1225, 1286
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	335, 1240
BstDEI	CTNAG	3 cut(s)	225, 826, 915
BstDSI	CCRYGG	2 cut(s)	573, 842
BstF5I	GGATG	1 cut(s)	936
BstMAI	GTCTC	1 cut(s)	618
BstNI	CCWGG	3 cut(s)	345, 549, 1017
BstSCI	CCNGG	4 cut(s)	343, 547, 593, 1015
BstSFI	CTRYAG	1 cut(s)	1204
BstSLI	GKGCMC	2 cut(s)	1213, 1221
BstX2I	RGATCY	3 cut(s)	467, 551, 661
BstYI	RGATCY	3 cut(s)	467, 551, 661
Bsu15I	ATCGAT	3 cut(s)	171, 188, 958
BsuTUI	ATCGAT	3 cut(s)	171, 188, 958
BtgI	CCRYGG	2 cut(s)	573, 842
BtsCI	GGATG	1 cut(s)	936
BtsIMutI	CAGTG	5 cut(s)	567, 747, 1213, 1221, 1221
Cac8I	GCNNGC	2 cut(s)	335, 1240
Cfr13I	GGNCC	1 cut(s)	903
ClaI	ATCGAT	3 cut(s)	171, 188, 958
DdeI	CTNAG	3 cut(s)	225, 826, 915
Eco130I	CCWWGG	4 cut(s)	321, 842, 971, 1248
Eco47I	GGWCC	1 cut(s)	903
Eco57I	CTGAAG	1 cut(s)	933
Eco88I	CYCGRG	2 cut(s)	696, 1070
EcoRII	CCWGG	3 cut(s)	343, 547, 1015
EcoT14I	CCWWGG	4 cut(s)	321, 842, 971, 1248
EcoT22I	ATGCAT	1 cut(s)	537
ErhI	CCWWGG	4 cut(s)	321, 842, 971, 1248
FaqI	GGGAC	1 cut(s)	749
FauNDI	CATATG	1 cut(s)	1189
FbaI	TGATCA	2 cut(s)	433, 1192
FblI	GTMKAC	1 cut(s)	603
FokI	GGATG	1 cut(s)	943
FspBI	CTAG	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	810
HapII	CCGG	2 cut(s)	78, 594
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HinfI	GANTC	8 cut(s)	173, 416, 565, 605, 773, 785, 1020, 1305
HpaII	CCGG	2 cut(s)	78, 594
HphI	GGTGA	2 cut(s)	892, 1005
Hpy166II	GTNNAC	7 cut(s)	9, 212, 604, 871, 906, 1048, 1219
Hpy188I	TCNGA	7 cut(s)	50, 123, 138, 449, 472, 916, 1310
Hpy188III	TCNNGA	7 cut(s)	106, 264, 518, 696, 770, 789, 1072
Hpy8I	GTNNAC	7 cut(s)	9, 212, 604, 871, 906, 1048, 1219
HpyAV	CCTTC	2 cut(s)	393, 680
HpyCH4III	ACNGT	5 cut(s)	361, 880, 1208, 1225, 1286
HpyCH4V	TGCA	6 cut(s)	23, 235, 491, 535, 1149, 1219
HpyF3I	CTNAG	3 cut(s)	225, 826, 915
Ksp22I	TGATCA	2 cut(s)	433, 1192
LmnI	GCTCC	1 cut(s)	517
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	604, 758
MflI	RGATCY	3 cut(s)	467, 551, 661
MhlI	GDGCHC	2 cut(s)	1213, 1221
MluCI	AATT	9 cut(s)	62, 125, 443, 482, 589, 805, 910, 1227, 1299
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	407
Mph1103I	ATGCAT	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	2 cut(s)	197, 378
MslI	CAYNNNNRTG	1 cut(s)	878
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	2 cut(s)	78, 594
MspR9I	CCNGG	4 cut(s)	345, 549, 595, 1017
Mva1269I	GAATGC	1 cut(s)	1151
MvaI	CCWGG	3 cut(s)	345, 549, 1017
NciI	CCSGG	1 cut(s)	595
NcoI	CCATGG	1 cut(s)	842
NdeI	CATATG	1 cut(s)	1189
NlaIV	GGNNCC	4 cut(s)	93, 222, 513, 1059
NsiI	ATGCAT	1 cut(s)	537
PaeR7I	CTCGAG	2 cut(s)	696, 1070
PctI	GAATGC	1 cut(s)	1151
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	7 cut(s)	173, 416, 565, 773, 785, 1020, 1305
PflMI	CCANNNNNTGG	1 cut(s)	152
PfoI	TCCNGGA	1 cut(s)	593
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PsiI	TTATAA	1 cut(s)	1137
Psp6I	CCWGG	3 cut(s)	343, 547, 1015
PspGI	CCWGG	3 cut(s)	343, 547, 1015
PspN4I	GGNNCC	4 cut(s)	93, 222, 513, 1059
PspPI	GGNCC	1 cut(s)	903
PsuI	RGATCY	3 cut(s)	467, 551, 661
RseI	CAYNNNNRTG	1 cut(s)	878
SaqAI	TTAA	2 cut(s)	197, 378
Sau96I	GGNCC	1 cut(s)	903
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	4 cut(s)	345, 549, 595, 1017
SduI	GDGCHC	2 cut(s)	1213, 1221
SetI	ASST	8 cut(s)	97, 226, 635, 781, 827, 1018, 1056, 1250
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	1204
Sfr274I	CTCGAG	2 cut(s)	696, 1070
SinI	GGWCC	1 cut(s)	903
SlaI	CTCGAG	2 cut(s)	696, 1070
SmiMI	CAYNNNNRTG	1 cut(s)	878
SmlI	CTYRAG	6 cut(s)	104, 163, 377, 696, 1070, 1261
SmoI	CTYRAG	6 cut(s)	104, 163, 377, 696, 1070, 1261
Sse9I	AATT	9 cut(s)	62, 125, 443, 482, 589, 805, 910, 1227, 1299
SsiI	CCGC	1 cut(s)	1130
SspI	AATATT	1 cut(s)	1041
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	343, 547, 593, 1015
StyI	CCWWGG	4 cut(s)	321, 842, 971, 1248
TaaI	ACNGT	5 cut(s)	361, 880, 1208, 1225, 1286
TaqI	TCGA	6 cut(s)	171, 188, 697, 958, 1071, 1182
TasI	AATT	9 cut(s)	62, 125, 443, 482, 589, 805, 910, 1227, 1299
TfiI	GAWTC	7 cut(s)	173, 416, 565, 773, 785, 1020, 1305
Tru1I	TTAA	2 cut(s)	197, 378
Tru9I	TTAA	2 cut(s)	197, 378
TscAI	CASTG	5 cut(s)	567, 754, 1213, 1221, 1228
TspDTI	ATGAA	8 cut(s)	23, 308, 340, 375, 489, 597, 1185, 1269
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	5 cut(s)	567, 754, 1213, 1221, 1228
Van91I	CCANNNNNTGG	1 cut(s)	152
Vha464I	CTTAAG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	1217
VpaK11BI	GGWCC	1 cut(s)	903
XapI	RAATTY	5 cut(s)	62, 125, 482, 589, 910
XhoI	CTCGAG	2 cut(s)	696, 1070
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.