Rh1BG037400

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
4997265 .. 5005329
8065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG037400.1

Sequence Viewer

Length: 1452 bp
ATGGGTTCTTCCGGCACTTGTGGGCTTCCCAAACTTATCTGTGTTGTGTTCGTGATATTGTTTCTTGGCTCCTGTGCTTCTTCATCATCTTCCTTGCACCCTTTGGTTGTCCAGTCACAGATTGAACACCTTAACCACACGGCAATATCAGAGTTTAGGTTGCTGAACAGAAAATTTCTTGGCAACTGTCCGAATCCGAGCCCATATCTGCAAATTAGTGTTAACTCGAGTCCTGGTGGCCTTGGAGATGATGAGTTTGTGACTGTCAATGTTAGTGGCATCTTGAACCCTTCTAAAAATGATTGGGTGGCCATGATTTCACCTGCTAATTCTGATGTCTCAACCTGTCCTTTGAATACGTTTTACTATATACAGACTGGTGATTTTAGTAAACTTCCACTTCTCTGCCATTATCCTGTTAAGGCAACATACATGAGCACTGATCCTGACTACCTCAGTTGCAAGAAGAAGGAATGCAAAAAGTATCAGAATGGTACCAGTCACTGTGCTATCTCCACCTGCAGTGGTTCGATAACATTTCATGTTATTAACATCAGAACCGACATCGAATTCGTCTTGTTTTCTGATGGATTTGAGGTCCCTTGCATTTTGAAGAAAGCAAACCCTCTGAAATTTGCCAATCCAAAGAAGCCACTGTATGGACATCTCTCGAGCATAGACTCAACTGGAACATCGATGAAATTAACATGGGTCAGTGGAGATGAGAAACCTCAGCAAGTACAATATGGAGATGGAAAATCACAGACTTCAGTAGTTACCACATTTTCACAAGATGACATGCAGAGTTCACCTGCTATACCAAGTCCAGCCAAAGACTTTGGGTGGCATGATCCAGGCTTCATTCATTCAGCAGTGATGACAGGACTTGAGCCTTCATCTAGCTTCTCTTATAGATATGGAAGTGATTCAGTTGGTTGGAGTGATCGAATCCAATTTCGCACTCCCCCTGTGGGAGGATCTGATGAACTCAAATTTCTTGCATTTGGCGACATGGGAAAGGCTCCTCGTGATTCTTCTGTAGAGCATTATATTCAGCCAGGATCCCTCTCAGTGATTGAAGCCGTGACAGATGAAATAAATTCCGGGAATGTAGACTCTGTCTTCCACATTGGAGATATAAGCTATGCCACTGGGTTTTTAGTTGAATGGGATTTTTTCCTTCACCAAATCAACCCTGTTGCTTCTCGAGTTTCATACATGACAGCTATCGGGAACCATGAGAGGGACTATATAGACTCTGGATCAGTGTACGTTCTTGCAGATTCGGGTGGGGAAGTTGGAGTTCCCTATGAGACTTACTTTCCAATGCCAACCCCAGCAAAGGATAAACCATGGTATTCCATAGAACAAGGAAGTGTCCACATCACGATGATTTCAACAGAGCATGACTGGACCAAAAATTCTGAGCAGGTAAAGATGATTAAGCACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

483

Amino Acids

52.95

Weight (kDa)

5.55

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_PAP PF17808 83 - 214 3.7e-35 Fn3-like domain from Purple Acid Phosphatase
Pur_ac_phosph_N PF16656 220 - 321 4.2e-16 Purple acid Phosphatase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 331, 527, 820
Acc36I ACCTGC 4 cut(s) 331, 527, 820, 1420
Acc65I GGTACC 1 cut(s) 494
AccB1I GGYRCC 1 cut(s) 494
AccB7I CCANNNNNTGG 1 cut(s) 659
AccI GTMKAC 1 cut(s) 1113
AclWI GGATC 6 cut(s) 437, 845, 985, 1056, 1069, 1270
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 6 cut(s) 173, 569, 632, 992, 1099, 1420
AcuI CTGAAG 1 cut(s) 753
AfaI GTAC 3 cut(s) 496, 741, 1271
AfiI CCNNNNNNNGG 5 cut(s) 659, 971, 974, 1243, 1342
AgsI TTSAA 7 cut(s) 125, 286, 355, 613, 1079, 1166, 1398
AjnI CCWGG 3 cut(s) 232, 853, 1057
AluBI AGCT 3 cut(s) 903, 1143, 1226
AluI AGCT 3 cut(s) 903, 1143, 1226
Alw21I GWGCWC 1 cut(s) 440
Alw26I GTCTC 2 cut(s) 343, 1307
AlwI GGATC 6 cut(s) 437, 845, 985, 1056, 1069, 1270
AlwNI CAGNNNCTG 1 cut(s) 504
Ama87I CYCGRG 3 cut(s) 226, 670, 1206
AoxI GGCC 2 cut(s) 238, 309
ApoI RAATTY 6 cut(s) 173, 569, 632, 992, 1099, 1420
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
Asp700I GAANNNNTTC 1 cut(s) 925
Asp718I GGTACC 1 cut(s) 494
AspS9I GGNCC 2 cut(s) 598, 1413
AsuC2I CCSGG 1 cut(s) 1105
AsuHPI GGTGA 4 cut(s) 312, 392, 801, 1175
AvaI CYCGRG 3 cut(s) 226, 670, 1206
AvaII GGWCC 2 cut(s) 598, 1413
BalI TGGCCA 1 cut(s) 311
BamHI GGATCC 1 cut(s) 1061
BanI GGYRCC 1 cut(s) 494
BanII GRGCYC 1 cut(s) 203
BauI CACGAG 1 cut(s) 1026
BbsI GAAGAC 1 cut(s) 1114
Bbv12I GWGCWC 1 cut(s) 440
BbvCI CCTCAGC 1 cut(s) 732
BccI CCATC 2 cut(s) 581, 746
BceAI ACGGC 2 cut(s) 156, 1067
BciT130I CCWGG 3 cut(s) 234, 855, 1059
BcnI CCSGG 1 cut(s) 1105
BcoDI GTCTC 2 cut(s) 343, 1307
BfaI CTAG 1 cut(s) 900
BfmI CTRYAG 2 cut(s) 520, 1038
BfuAI ACCTGC 4 cut(s) 331, 527, 820, 1420
Bme1390I CCNGG 4 cut(s) 234, 855, 1059, 1105
Bme18I GGWCC 2 cut(s) 598, 1413
BmeT110I CYCGRG 3 cut(s) 226, 670, 1206
BmgT120I GGNCC 2 cut(s) 598, 1413
BmiI GGNNCC 6 cut(s) 70, 496, 600, 1023, 1063, 1235
BmrFI CCNGG 4 cut(s) 234, 855, 1059, 1105
BmrI ACTGGG 1 cut(s) 1161
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 1161
BpiI GAAGAC 1 cut(s) 1114
Bpu10I CCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 908
BpuMI CCSGG 1 cut(s) 1105
Bsa29I ATCGAT 1 cut(s) 695
BsaJI CCNNGG 2 cut(s) 241, 1352
Bsc4I CCNNNNNNNGG 5 cut(s) 659, 971, 974, 1243, 1342
Bse1I ACTGG 6 cut(s) 112, 382, 498, 691, 1156, 1415
BseBI CCWGG 3 cut(s) 234, 855, 1059
BseCI ATCGAT 1 cut(s) 695
BseDI CCNNGG 2 cut(s) 241, 1352
BseLI CCNNNNNNNGG 5 cut(s) 659, 971, 974, 1243, 1342
BseMII CTCAG 4 cut(s) 469, 746, 1083, 1416
BseNI ACTGG 6 cut(s) 112, 382, 498, 691, 1156, 1415
BseRI GAGGAG 1 cut(s) 1014
BseYI CCCAGC 1 cut(s) 1336
BshFI GGCC 2 cut(s) 240, 311
BshNI GGYRCC 1 cut(s) 494
BshVI ATCGAT 1 cut(s) 695
BsiHKAI GWGCWC 1 cut(s) 440
BsiHKCI CYCGRG 3 cut(s) 226, 670, 1206
BsiSI CCGG 2 cut(s) 12, 1104
BslFI GGGAC 2 cut(s) 584, 1259
BslI CCNNNNNNNGG 5 cut(s) 659, 971, 974, 1243, 1342
BsmAI GTCTC 2 cut(s) 343, 1307
BsmFI GGGAC 2 cut(s) 584, 1259
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 2 cut(s) 240, 311
BsoBI CYCGRG 3 cut(s) 226, 670, 1206
Bsp1286I GDGCHC 2 cut(s) 203, 440
Bsp143I GATC 6 cut(s) 442, 850, 943, 977, 1061, 1262
Bsp19I CCATGG 1 cut(s) 1352
BspANI GGCC 2 cut(s) 240, 311
BspCNI CTCAG 4 cut(s) 468, 745, 1082, 1417
BspDI ATCGAT 1 cut(s) 695
BspLI GGNNCC 6 cut(s) 70, 496, 600, 1023, 1063, 1235
BspMAI CTGCAG 1 cut(s) 524
BspMI ACCTGC 4 cut(s) 331, 527, 820, 1420
BspPI GGATC 6 cut(s) 437, 845, 985, 1056, 1069, 1270
BspT107I GGYRCC 1 cut(s) 494
BsrI ACTGG 6 cut(s) 112, 382, 498, 691, 1156, 1415
BssECI CCNNGG 2 cut(s) 241, 1352
BssMI GATC 6 cut(s) 442, 850, 943, 977, 1061, 1262
BssSI CACGAG 1 cut(s) 1026
BssT1I CCWWGG 2 cut(s) 241, 1352
Bst2BI CACGAG 1 cut(s) 1026
Bst2UI CCWGG 3 cut(s) 234, 855, 1059
Bst4CI ACNGT 4 cut(s) 188, 265, 506, 657
BstDEI CTNAG 4 cut(s) 455, 732, 1069, 1425
BstDSI CCRYGG 1 cut(s) 1352
BstENI CCTNNNNNAGG 1 cut(s) 972
BstKTI GATC 6 cut(s) 445, 853, 946, 980, 1064, 1265
BstMAI GTCTC 2 cut(s) 343, 1307
BstMBI GATC 6 cut(s) 442, 850, 943, 977, 1061, 1262
BstNI CCWGG 3 cut(s) 234, 855, 1059
BstNSI RCATGY 1 cut(s) 802
BstSCI CCNGG 4 cut(s) 232, 853, 1057, 1103
BstSFI CTRYAG 2 cut(s) 520, 1038
BstV2I GAAGAC 1 cut(s) 1114
BstX2I RGATCY 2 cut(s) 977, 1061
BstYI RGATCY 2 cut(s) 977, 1061
Bsu15I ATCGAT 1 cut(s) 695
BsuRI GGCC 2 cut(s) 240, 311
BsuTUI ATCGAT 1 cut(s) 695
BtgI CCRYGG 1 cut(s) 1352
BtsI GCAGTG 2 cut(s) 529, 879
BveI ACCTGC 4 cut(s) 331, 527, 820, 1420
CaiI CAGNNNCTG 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 598, 1413
ClaI ATCGAT 1 cut(s) 695
Csp6I GTAC 3 cut(s) 495, 740, 1270
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviQI GTAC 3 cut(s) 495, 740, 1270
DdeI CTNAG 4 cut(s) 455, 732, 1069, 1425
DpnI GATC 6 cut(s) 444, 852, 945, 979, 1063, 1264
DpnII GATC 6 cut(s) 442, 850, 943, 977, 1061, 1262
EaeI YGGCCR 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 241, 1352
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 598, 1413
Eco57I CTGAAG 1 cut(s) 753
Eco88I CYCGRG 3 cut(s) 226, 670, 1206
EcoNI CCTNNNNNAGG 1 cut(s) 972
EcoO109I RGGNCCY 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 3 cut(s) 232, 853, 1057
EcoT14I CCWWGG 2 cut(s) 241, 1352
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 2 cut(s) 241, 1352
FaqI GGGAC 2 cut(s) 584, 1259
FblI GTMKAC 1 cut(s) 1113
FriOI GRGCYC 1 cut(s) 203
FspBI CTAG 1 cut(s) 900
GsaI CCCAGC 1 cut(s) 1340
HaeIII GGCC 2 cut(s) 240, 311
HapII CCGG 2 cut(s) 12, 1104
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 9 cut(s) 193, 229, 680, 926, 948, 1031, 1115, 1256, 1283
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 2 cut(s) 12, 1104
HphI GGTGA 4 cut(s) 312, 392, 801, 1175
Hpy166II GTNNAC 6 cut(s) 223, 392, 809, 1114, 1270, 1381
Hpy188III TCNNGA 9 cut(s) 52, 283, 446, 670, 1028, 1206, 1231, 1260, 1387
Hpy8I GTNNAC 6 cut(s) 223, 392, 809, 1114, 1270, 1381
HpyAV CCTTC 4 cut(s) 300, 463, 903, 1190
HpyCH4III ACNGT 4 cut(s) 188, 265, 506, 657
HpyCH4IV ACGT 2 cut(s) 359, 1272
HpyCH4V TGCA 9 cut(s) 97, 211, 462, 477, 522, 606, 802, 1001, 1280
HpyF3I CTNAG 4 cut(s) 455, 732, 1069, 1425
HpySE526I ACGT 2 cut(s) 359, 1272
KpnI GGTACC 1 cut(s) 498
KspAI GTTAAC 1 cut(s) 223
Kzo9I GATC 6 cut(s) 442, 850, 943, 977, 1061, 1262
LmnI GCTCC 2 cut(s) 74, 1027
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 900
MaeII ACGT 2 cut(s) 359, 1272
MaeIII GTNAC 5 cut(s) 114, 259, 500, 775, 1084
MalI GATC 6 cut(s) 444, 852, 945, 979, 1063, 1264
MboI GATC 6 cut(s) 442, 850, 943, 977, 1061, 1262
MboII GAAGA 6 cut(s) 72, 81, 478, 625, 1026, 1114
MflI RGATCY 2 cut(s) 977, 1061
MhlI GDGCHC 2 cut(s) 203, 440
MlsI TGGCCA 1 cut(s) 311
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 4 cut(s) 238, 674, 1109, 1250
MmeI TCCRAC 2 cut(s) 917, 1279
MnlI CCTC 8 cut(s) 464, 589, 636, 741, 968, 1035, 1076, 1236
Mox20I TGGCCA 1 cut(s) 311
MroXI GAANNNNTTC 1 cut(s) 925
MscI TGGCCA 1 cut(s) 311
MseI TTAA 6 cut(s) 132, 222, 420, 549, 704, 1443
MslI CAYNNNNRTG 1 cut(s) 1388
Msp20I TGGCCA 1 cut(s) 311
MspI CCGG 2 cut(s) 12, 1104
MspR9I CCNGG 4 cut(s) 234, 855, 1059, 1105
Mva1269I GAATGC 1 cut(s) 479
MvaI CCWGG 3 cut(s) 234, 855, 1059
NciI CCSGG 1 cut(s) 1105
NcoI CCATGG 1 cut(s) 1352
NdeII GATC 6 cut(s) 442, 850, 943, 977, 1061, 1262
NlaIV GGNNCC 6 cut(s) 70, 496, 600, 1023, 1063, 1235
NmuCI GTSAC 4 cut(s) 114, 259, 500, 1084
NspI RCATGY 1 cut(s) 802
PaeR7I CTCGAG 3 cut(s) 226, 670, 1206
PaqCI CACCTGC 3 cut(s) 331, 527, 820
PctI GAATGC 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 925
PfeI GAWTC 5 cut(s) 193, 926, 948, 1031, 1283
PflFI GACNNNGTC 1 cut(s) 1118
PflMI CCANNNNNTGG 1 cut(s) 659
PfoI TCCNGGA 1 cut(s) 1103
PleI GAGTC 4 cut(s) 237, 674, 1109, 1250
PpsI GAGTC 4 cut(s) 237, 674, 1109, 1250
PpuMI RGGWCCY 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 3 cut(s) 232, 853, 1057
PspFI CCCAGC 1 cut(s) 1336
PspGI CCWGG 3 cut(s) 232, 853, 1057
PspN4I GGNNCC 6 cut(s) 70, 496, 600, 1023, 1063, 1235
PspPI GGNCC 2 cut(s) 598, 1413
PspPPI RGGWCCY 1 cut(s) 598
PspXI VCTCGAGB 1 cut(s) 226
PstI CTGCAG 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 504
PsuI RGATCY 2 cut(s) 977, 1061
PsyI GACNNNGTC 1 cut(s) 1118
RsaI GTAC 3 cut(s) 496, 741, 1271
RsaNI GTAC 3 cut(s) 495, 740, 1270
RseI CAYNNNNRTG 1 cut(s) 1388
SaqAI TTAA 6 cut(s) 132, 222, 420, 549, 704, 1443
Sau3AI GATC 6 cut(s) 442, 850, 943, 977, 1061, 1262
Sau96I GGNCC 2 cut(s) 598, 1413
SchI GAGTC 4 cut(s) 238, 674, 1109, 1250
ScrFI CCNGG 4 cut(s) 234, 855, 1059, 1105
SduI GDGCHC 2 cut(s) 203, 440
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 2 cut(s) 520, 1038
Sfr274I CTCGAG 3 cut(s) 226, 670, 1206
SinI GGWCC 2 cut(s) 598, 1413
SlaI CTCGAG 3 cut(s) 226, 670, 1206
SmiMI CAYNNNNRTG 1 cut(s) 1388
SmlI CTYRAG 4 cut(s) 226, 670, 887, 1206
SmoI CTYRAG 4 cut(s) 226, 670, 887, 1206
SspMI CTAG 1 cut(s) 900
StyD4I CCNGG 4 cut(s) 232, 853, 1057, 1103
StyI CCWWGG 2 cut(s) 241, 1352
TaaI ACNGT 4 cut(s) 188, 265, 506, 657
TaiI ACGT 2 cut(s) 362, 1275
TaqI TCGA 7 cut(s) 227, 530, 567, 671, 695, 946, 1207
TatI WGTACW 1 cut(s) 739
TfiI GAWTC 5 cut(s) 193, 926, 948, 1031, 1283
Tru1I TTAA 6 cut(s) 132, 222, 420, 549, 704, 1443
Tru9I TTAA 6 cut(s) 132, 222, 420, 549, 704, 1443
TscAI CASTG 9 cut(s) 445, 509, 529, 660, 721, 879, 1077, 1156, 1272
TseFI GTSAC 4 cut(s) 114, 259, 500, 1084
Tsp45I GTSAC 4 cut(s) 114, 259, 500, 1084
TspDTI ATGAA 9 cut(s) 72, 530, 713, 850, 854, 885, 999, 1107, 1203
TspRI CASTG 9 cut(s) 445, 509, 529, 660, 721, 879, 1077, 1156, 1272
Tth111I GACNNNGTC 1 cut(s) 1118
Van91I CCANNNNNTGG 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 598, 1413
XagI CCTNNNNNAGG 1 cut(s) 972
XapI RAATTY 6 cut(s) 173, 569, 632, 992, 1099, 1420
XceI RCATGY 1 cut(s) 802
XhoI CTCGAG 3 cut(s) 226, 670, 1206
XmiI GTMKAC 1 cut(s) 1113
XmnI GAANNNNTTC 1 cut(s) 925
XspI CTAG 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.