Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Forward (+)

35733377 .. 35734261

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38273

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGAAAGGCTCCTCGTGATTCTTCTGTCGTGCATTATATTCAGCCAGGATCCCTCTCAGTGATTGAGGCCGTGACGGATGAAATAAATTCCAGGAATGTAGACTCTGTCTTCCACATTGGAGATATAAGCTATGCCACTGGGTTTTTAGTTGAATGGGATTTTTTCCTTCACCAAATCAACCCTATTGCTTCTCGAGTTTCATACATGACAGCTATCGGGAACCATGAGAGGGACTATATAGACTCTGGATCAGTGTACATTCTTGCAGATTCAGGTGGGGAAGTTGGAGTTCCCTATGAGACTTACTTTCCAATGCCAACCCCAGCAAAGGATAAACCATGGTATTCCATAGAACAAGGAAGCGTCCACATCATGATGATTTCAACAGAGCATGACTGGACCAAAAATTCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

139

Amino Acids

15.56

Weight (kDa)

4.73

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AclWI	GGATC	3 cut(s)	45, 58, 259
AcsI	RAATTY	2 cut(s)	88, 409
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	232, 331
AgsI	TTSAA	2 cut(s)	155, 387
AjnI	CCWGG	2 cut(s)	46, 92
AluBI	AGCT	2 cut(s)	132, 215
AluI	AGCT	2 cut(s)	132, 215
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	3 cut(s)	45, 58, 259
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	1 cut(s)	69
ApoI	RAATTY	2 cut(s)	88, 409
AspS9I	GGNCC	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	48, 94
BcoDI	GTCTC	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	48, 94
Bme18I	GGWCC	1 cut(s)	402
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	402
BmiI	GGNNCC	3 cut(s)	12, 52, 224
BmrFI	CCNGG	2 cut(s)	48, 94
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 331
Bse1I	ACTGG	2 cut(s)	145, 404
BseBI	CCWGG	2 cut(s)	48, 94
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	232, 331
BseMII	CTCAG	2 cut(s)	72, 405
BseNI	ACTGG	2 cut(s)	145, 404
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	232, 331
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	50, 251
Bsp19I	CCATGG	1 cut(s)	341
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	71, 406
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	12, 52, 224
BspPI	GGATC	3 cut(s)	45, 58, 259
BsrGI	TGTACA	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	145, 404
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	2 cut(s)	50, 251
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	341
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	48, 94
BstAUI	TGTACA	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	58, 414
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	53, 254
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	50, 251
BstNI	CCWGG	2 cut(s)	48, 94
BstSCI	CCNGG	2 cut(s)	46, 92
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	66, 138, 261
CciI	TCATGA	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	402
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	5 cut(s)	208, 227, 342, 376, 395
CviJI	RGCY	5 cut(s)	11, 46, 71, 132, 215
CviKI_1	RGCY	5 cut(s)	11, 46, 71, 132, 215
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	58, 414
DpnI	GATC	2 cut(s)	52, 253
DpnII	GATC	2 cut(s)	50, 251
Eco130I	CCWWGG	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	46, 92
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	5 cut(s)	211, 230, 345, 379, 398
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	5 cut(s)	207, 226, 341, 375, 394
FblI	GTMKAC	1 cut(s)	102
FokI	GGATG	1 cut(s)	92
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	71
HgaI	GACGC	1 cut(s)	355
Hin1II	CATG	5 cut(s)	211, 230, 345, 379, 398
HinfI	GANTC	4 cut(s)	20, 104, 245, 272
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	3 cut(s)	103, 259, 370
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	5 cut(s)	17, 195, 220, 249, 376
Hpy8I	GTNNAC	3 cut(s)	103, 259, 370
HpyAV	CCTTC	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	34, 269
HpyF3I	CTNAG	2 cut(s)	58, 414
Hsp92II	CATG	5 cut(s)	211, 230, 345, 379, 398
Kzo9I	GATC	2 cut(s)	50, 251
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	9 cut(s)	33, 60, 79, 106, 126, 234, 261, 339, 385
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	52, 253
MboI	GATC	2 cut(s)	50, 251
MboII	GAAGA	2 cut(s)	15, 103
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	2 cut(s)	88, 409
MlyI	GAGTC	2 cut(s)	98, 239
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	4 cut(s)	24, 61, 65, 225
MslI	CAYNNNNRTG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	48, 94
MvaI	CCWGG	2 cut(s)	48, 94
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	2 cut(s)	50, 251
NlaIII	CATG	5 cut(s)	211, 230, 345, 379, 398
NlaIV	GGNNCC	3 cut(s)	12, 52, 224
NmuCI	GTSAC	1 cut(s)	73
PaeR7I	CTCGAG	1 cut(s)	195
PagI	TCATGA	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	20, 272
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	92
PleI	GAGTC	2 cut(s)	98, 239
PpsI	GAGTC	2 cut(s)	98, 239
Psp6I	CCWGG	2 cut(s)	46, 92
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	2 cut(s)	46, 92
PspN4I	GGNNCC	3 cut(s)	12, 52, 224
PspPI	GGNCC	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	50
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	377
Sau3AI	GATC	2 cut(s)	50, 251
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	2 cut(s)	98, 239
ScrFI	CCNGG	2 cut(s)	48, 94
SetI	ASST	3 cut(s)	134, 217, 280
Sfr274I	CTCGAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	402
SlaI	CTCGAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	88, 409
StyD4I	CCNGG	2 cut(s)	46, 92
StyI	CCWWGG	1 cut(s)	341
TaqI	TCGA	1 cut(s)	196
TasI	AATT	2 cut(s)	88, 409
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	20, 272
TscAI	CASTG	3 cut(s)	66, 145, 261
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	96, 192
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	3 cut(s)	66, 145, 261
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	2 cut(s)	88, 409
XhoI	CTCGAG	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.