RchiOBHm_Chr6g0289041

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002404
Physical Location & Seq
Reverse (-)
52227556 .. 52229556
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25931

Sequence Viewer

Length: 930 bp
ATGGGAAAGGCTCCTCGTGATTCTTCTGTCGAGCATTATATTCAGCCAGGATCCCTCTCAGTGATTGAGGCCATGACGGATGATATAAATTCCAGGAATGTAGACTCTATCTTCCACATTGGAGATATAAGCTATGCCACTGGGTTTTTAGTTGAATGGGATTTTTTCCTTCACCAAATCAACCCTATTTCTTCTCGAGTTTCATACATGACAGCTATCGGGAACCATGAGAGGGAATATATAGACTCTGGATCAGTGTACATTCTTGCAGATTCAGGTGGGGAAGTTGGAGTTCCCTATGAGACTTACTTTCCAATGCCAACCCCAGCAAAGGATAAACCATGGTATTCCATAGAACAAGGAAGCGTCCACATCACAATGATTTCAACAGAGCATGACTGGACCAAAAATTCTGAGCAGTATCAATGGATGAAAAAGGACATGGCTTCAGTTGATCGATCTAAAACTCCTTGGTTGATATTTATGGGGCATAGACCAATGTATACATCTGCCCCTGGATTCCTGAGTGTTGATGAGAAATTCATTGACAAAGTTGAACCATTACTTCTGGCAAGCATAGTTGATCTGGCGCTGTTTGGTCACGTCCATAACTACGAGCGAACCTGCTCCATTTATAAGAGCCAATGCATGAAATTGCCTTGCAAAGATGAGGCTGGGATCTACACATATGATCACAGCAACTACAGTGCCCCAGTGCAAGCCATAATTGGAATGGCTGGCTTTTCCTTGGACAAGTTTCCCAGTGGTATTAACAATAGTTGGAGTTTATCAAGGCATTCTGAATATGGTTCTCTCAGAGCGCATGCAACAAGGACAGATATCAAATTAGAGGTGAGTATGTATGAAAACTTGAGAATAGCACTTCATACTGTAAGACACTTACGTATGGACTCAATGACATTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

309

Amino Acids

35.12

Weight (kDa)

5.75

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 15 - 205 9.4e-14 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
Acc36I ACCTGC 1 cut(s) 632
AccI GTMKAC 2 cut(s) 102, 503
AclWI GGATC 4 cut(s) 45, 58, 259, 686
AcsI RAATTY 3 cut(s) 88, 409, 539
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 232, 331
AgsI TTSAA 3 cut(s) 155, 387, 557
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 3 cut(s) 46, 92, 514
AluBI AGCT 2 cut(s) 132, 215
AluI AGCT 2 cut(s) 132, 215
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 4 cut(s) 45, 58, 259, 686
Ama87I CYCGRG 1 cut(s) 195
AoxI GGCC 1 cut(s) 69
ApoI RAATTY 3 cut(s) 88, 409, 539
AspLEI GCGC 2 cut(s) 592, 823
AspS9I GGNCC 1 cut(s) 402
AsuHPI GGTGA 2 cut(s) 164, 865
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 712
BamHI GGATCC 1 cut(s) 50
BauI CACGAG 1 cut(s) 15
BciT130I CCWGG 3 cut(s) 48, 94, 516
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 703
BfoI RGCGCY 1 cut(s) 593
BfuAI ACCTGC 1 cut(s) 632
Bme1390I CCNGG 3 cut(s) 48, 94, 516
Bme18I GGWCC 1 cut(s) 402
BmeT110I CYCGRG 1 cut(s) 195
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 3 cut(s) 12, 52, 224
BmrFI CCNGG 3 cut(s) 48, 94, 516
BmrI ACTGGG 3 cut(s) 150, 707, 756
BmuI ACTGGG 3 cut(s) 150, 707, 756
BpuEI CTTGAG 1 cut(s) 892
Bsa29I ATCGAT 1 cut(s) 457
BsaAI YACGTR 1 cut(s) 905
BsaJI CCNNGG 4 cut(s) 341, 470, 514, 747
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 331
Bse1I ACTGG 4 cut(s) 145, 404, 713, 762
BseBI CCWGG 3 cut(s) 48, 94, 516
BseCI ATCGAT 1 cut(s) 457
BseDI CCNNGG 4 cut(s) 341, 470, 514, 747
BseGI GGATG 2 cut(s) 85, 435
BseLI CCNNNNNNNGG 2 cut(s) 232, 331
BseMII CTCAG 4 cut(s) 72, 405, 515, 829
BseNI ACTGG 4 cut(s) 145, 404, 713, 762
BseSI GKGCMC 1 cut(s) 712
BseYI CCCAGC 2 cut(s) 325, 674
BshFI GGCC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 457
BsiHKCI CYCGRG 1 cut(s) 195
BslI CCNNNNNNNGG 2 cut(s) 232, 331
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 712
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 7 cut(s) 50, 251, 454, 458, 583, 678, 691
Bsp19I CCATGG 1 cut(s) 341
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 4 cut(s) 71, 406, 516, 828
BspDI ATCGAT 1 cut(s) 457
BspLI GGNNCC 3 cut(s) 12, 52, 224
BspMI ACCTGC 1 cut(s) 632
BspPI GGATC 4 cut(s) 45, 58, 259, 686
BsrGI TGTACA 1 cut(s) 258
BsrI ACTGG 4 cut(s) 145, 404, 713, 762
BssECI CCNNGG 4 cut(s) 341, 470, 514, 747
BssMI GATC 7 cut(s) 50, 251, 454, 458, 583, 678, 691
BssNAI GTATAC 1 cut(s) 504
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 3 cut(s) 341, 470, 747
Bst1107I GTATAC 1 cut(s) 504
Bst2BI CACGAG 1 cut(s) 15
Bst2UI CCWGG 3 cut(s) 48, 94, 516
Bst4CI ACNGT 2 cut(s) 707, 892
BstAUI TGTACA 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 905
BstC8I GCNNGC 4 cut(s) 574, 720, 739, 825
BstDEI CTNAG 4 cut(s) 58, 414, 524, 815
BstDSI CCRYGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 85, 435
BstH2I RGCGCY 1 cut(s) 593
BstHHI GCGC 2 cut(s) 592, 823
BstKTI GATC 7 cut(s) 53, 254, 457, 461, 586, 681, 694
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 7 cut(s) 50, 251, 454, 458, 583, 678, 691
BstNI CCWGG 3 cut(s) 48, 94, 516
BstNSI RCATGY 1 cut(s) 827
BstSCI CCNGG 3 cut(s) 46, 92, 514
BstSFI CTRYAG 1 cut(s) 703
BstSLI GKGCMC 1 cut(s) 712
BstSNI TACGTA 1 cut(s) 905
BstX2I RGATCY 2 cut(s) 50, 678
BstYI RGATCY 2 cut(s) 50, 678
BstZ17I GTATAC 1 cut(s) 504
Bsu15I ATCGAT 1 cut(s) 457
BsuRI GGCC 1 cut(s) 71
BsuTUI ATCGAT 1 cut(s) 457
BtgI CCRYGG 1 cut(s) 341
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 2 cut(s) 85, 435
BtsIMutI CAGTG 6 cut(s) 66, 138, 261, 712, 720, 769
BveI ACCTGC 1 cut(s) 632
Cac8I GCNNGC 4 cut(s) 574, 720, 739, 825
CfoI GCGC 2 cut(s) 592, 823
Cfr13I GGNCC 1 cut(s) 402
ClaI ATCGAT 1 cut(s) 457
CseI GACGC 1 cut(s) 355
Csp6I GTAC 1 cut(s) 259
CviAII CATG 8 cut(s) 73, 208, 227, 342, 395, 442, 649, 824
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 4 cut(s) 58, 414, 524, 815
DpnI GATC 7 cut(s) 52, 253, 456, 460, 585, 680, 693
DpnII GATC 7 cut(s) 50, 251, 454, 458, 583, 678, 691
Eco105I TACGTA 1 cut(s) 905
Eco130I CCWWGG 3 cut(s) 341, 470, 747
Eco32I GATATC 1 cut(s) 841
Eco47I GGWCC 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 195
EcoRII CCWGG 3 cut(s) 46, 92, 514
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 3 cut(s) 341, 470, 747
EcoT22I ATGCAT 1 cut(s) 650
ErhI CCWWGG 3 cut(s) 341, 470, 747
FaeI CATG 8 cut(s) 76, 211, 230, 345, 398, 445, 652, 827
FatI CATG 8 cut(s) 72, 207, 226, 341, 394, 441, 648, 823
FauNDI CATATG 1 cut(s) 688
FbaI TGATCA 1 cut(s) 691
FblI GTMKAC 2 cut(s) 102, 503
FokI GGATG 2 cut(s) 92, 442
GlaI GCGC 2 cut(s) 591, 822
GsaI CCCAGC 2 cut(s) 329, 678
HaeII RGCGCY 1 cut(s) 593
HaeIII GGCC 1 cut(s) 71
HgaI GACGC 1 cut(s) 355
HhaI GCGC 2 cut(s) 592, 823
Hin1II CATG 8 cut(s) 76, 211, 230, 345, 398, 445, 652, 827
Hin6I GCGC 2 cut(s) 590, 821
HinP1I GCGC 2 cut(s) 590, 821
HinfI GANTC 6 cut(s) 20, 104, 245, 272, 519, 911
HphI GGTGA 2 cut(s) 164, 865
Hpy166II GTNNAC 4 cut(s) 103, 259, 370, 504
Hpy188I TCNGA 3 cut(s) 415, 802, 818
Hpy188III TCNNGA 5 cut(s) 17, 195, 220, 249, 523
Hpy8I GTNNAC 4 cut(s) 103, 259, 370, 504
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 707, 892
HpyCH4IV ACGT 2 cut(s) 603, 904
HpyCH4V TGCA 5 cut(s) 269, 648, 663, 718, 827
HpyF3I CTNAG 4 cut(s) 58, 414, 524, 815
HpySE526I ACGT 2 cut(s) 603, 904
Hsp92II CATG 8 cut(s) 76, 211, 230, 345, 398, 445, 652, 827
HspAI GCGC 2 cut(s) 590, 821
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 7 cut(s) 50, 251, 454, 458, 583, 678, 691
LmnI GCTCC 2 cut(s) 16, 632
MaeII ACGT 2 cut(s) 603, 904
MaeIII GTNAC 1 cut(s) 599
MalI GATC 7 cut(s) 52, 253, 456, 460, 585, 680, 693
MboI GATC 7 cut(s) 50, 251, 454, 458, 583, 678, 691
MboII GAAGA 3 cut(s) 15, 103, 183
MflI RGATCY 2 cut(s) 50, 678
MhlI GDGCHC 1 cut(s) 712
MluCI AATT 6 cut(s) 88, 409, 539, 653, 726, 845
MlyI GAGTC 3 cut(s) 98, 239, 905
MmeI TCCRAC 2 cut(s) 268, 761
MnlI CCTC 6 cut(s) 24, 61, 65, 225, 664, 844
Mph1103I ATGCAT 1 cut(s) 650
MseI TTAA 1 cut(s) 771
MslI CAYNNNNRTG 1 cut(s) 377
MspR9I CCNGG 3 cut(s) 48, 94, 516
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 3 cut(s) 48, 94, 516
NcoI CCATGG 1 cut(s) 341
NdeI CATATG 1 cut(s) 688
NdeII GATC 7 cut(s) 50, 251, 454, 458, 583, 678, 691
NlaIII CATG 8 cut(s) 76, 211, 230, 345, 398, 445, 652, 827
NlaIV GGNNCC 3 cut(s) 12, 52, 224
NmuCI GTSAC 1 cut(s) 599
NsiI ATGCAT 1 cut(s) 650
NspI RCATGY 1 cut(s) 827
PaeI GCATGC 1 cut(s) 827
PaeR7I CTCGAG 1 cut(s) 195
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 3 cut(s) 20, 272, 519
PfoI TCCNGGA 1 cut(s) 92
PleI GAGTC 3 cut(s) 98, 239, 905
PpsI GAGTC 3 cut(s) 98, 239, 905
Ppu21I YACGTR 1 cut(s) 905
PsiI TTATAA 1 cut(s) 636
Psp6I CCWGG 3 cut(s) 46, 92, 514
PspFI CCCAGC 2 cut(s) 325, 674
PspGI CCWGG 3 cut(s) 46, 92, 514
PspN4I GGNNCC 3 cut(s) 12, 52, 224
PspPI GGNCC 1 cut(s) 402
PsuI RGATCY 2 cut(s) 50, 678
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 1 cut(s) 771
Sau3AI GATC 7 cut(s) 50, 251, 454, 458, 583, 678, 691
Sau96I GGNCC 1 cut(s) 402
SchI GAGTC 3 cut(s) 98, 239, 905
ScrFI CCNGG 3 cut(s) 48, 94, 516
SduI GDGCHC 1 cut(s) 712
SetI ASST 7 cut(s) 134, 217, 280, 606, 626, 855, 907
SfcI CTRYAG 1 cut(s) 703
Sfr274I CTCGAG 1 cut(s) 195
SinI GGWCC 1 cut(s) 402
SlaI CTCGAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 195, 871
SmoI CTYRAG 2 cut(s) 195, 871
SnaBI TACGTA 1 cut(s) 905
SphI GCATGC 1 cut(s) 827
Sse9I AATT 6 cut(s) 88, 409, 539, 653, 726, 845
StyD4I CCNGG 3 cut(s) 46, 92, 514
StyI CCWWGG 3 cut(s) 341, 470, 747
TaaI ACNGT 2 cut(s) 707, 892
TaiI ACGT 2 cut(s) 606, 907
TaqI TCGA 3 cut(s) 30, 196, 457
TasI AATT 6 cut(s) 88, 409, 539, 653, 726, 845
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 3 cut(s) 20, 272, 519
Tru1I TTAA 1 cut(s) 771
Tru9I TTAA 1 cut(s) 771
TscAI CASTG 6 cut(s) 66, 145, 261, 712, 720, 769
TseFI GTSAC 1 cut(s) 599
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 6 cut(s) 192, 446, 532, 665, 875, 879
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 6 cut(s) 66, 145, 261, 712, 720, 769
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 3 cut(s) 88, 409, 539
XceI RCATGY 1 cut(s) 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
XhoI CTCGAG 1 cut(s) 195
XmiI GTMKAC 2 cut(s) 102, 503
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.