Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Reverse (-)

50286279 .. 50288238

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAACTCAAATTTCTTGCATTTGGCGACATGGGAAAGGCTCCTCGTGATTCTTCTGTCGAGCATTATATTTAGGGACTATATAGACTCTGGATCAGTGTACATTCTTGCATATTCAGGTGGGGAAGTTGGAGTTCCCTATGAGACTTACTTTCCAATGCCAACCCCAGCAAAGGATAAACCATGGTATTCCATAGAACAAGGAAACGTCCACATCACGATGATTTCAACAGAGCATGACTGGACCAAAAATTCTGAGCAGTATCAATGGATGAAAAAGGACATGGCTTCAGTTGATCGATCTAAAACTCCTTTGTTGATATTTATGGGGCATAGACCAATGTATACATCTGCCCCTGGATTCCTGAGTGTTGATGAGAAAGTCGTTGACAAAGTTGAACCATTACTTCTGGCAAGCAAAGTTGATCTGGCGCTGTTTGGTCATGTCCATAACTACGAGCGAACCTGCTCCATTTATAAGAGCCAATGCATGAAATTGCCTTGCAAAGATGAGGCTGGGATCGACACATATGATCACAGCAACTACAATGCCCCAATGCAAGCCATAATCCTTCTTGACTCTATTAACAATAGTTGGAGTTTATCAAGGCATTCTGAATATGGTTCTCTCAGAGAGCATGCAACAAGGACAGATATCAAATTAGAGGTGAGTATGTATGAAAACTTGAGATTAGCGCTTCATACTGTAAGACACTTACGTATGGACTCAATGACATTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

247

Amino Acids

28.47

Weight (kDa)

6.11

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	78 - 152	7e-07	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	477
Acc36I	ACCTGC	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	344
AclWI	GGATC	2 cut(s)	100, 527
AcsI	RAATTY	2 cut(s)	10, 250
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	101
AfeI	AGCGCT	1 cut(s)	696
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	228, 398
AjnI	CCWGG	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	100, 527
Aor51HI	AGCGCT	1 cut(s)	696
ApoI	RAATTY	2 cut(s)	10, 250
AspLEI	GCGC	2 cut(s)	433, 697
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	679
AvaII	GGWCC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	357
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	137
BfoI	RGCGCY	2 cut(s)	434, 698
BfuAI	ACCTGC	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	706
Bsa29I	ATCGAT	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	719
BsaJI	CCNNGG	2 cut(s)	182, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	182, 355
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	3 cut(s)	246, 356, 643
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	32
BseYI	CCCAGC	2 cut(s)	166, 515
BshVI	ATCGAT	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	610
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	6 cut(s)	92, 295, 299, 424, 519, 532
Bsp19I	CCATGG	1 cut(s)	182
BspCNI	CTCAG	3 cut(s)	247, 357, 642
BspDI	ATCGAT	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	2 cut(s)	100, 527
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	182, 355
BssMI	GATC	6 cut(s)	92, 295, 299, 424, 519, 532
BssNAI	GTATAC	1 cut(s)	345
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	182
Bst1107I	GTATAC	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	706
BstAUI	TGTACA	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	719
BstC8I	GCNNGC	3 cut(s)	415, 561, 639
BstDEI	CTNAG	3 cut(s)	255, 365, 629
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	276
BstH2I	RGCGCY	2 cut(s)	434, 698
BstHHI	GCGC	2 cut(s)	433, 697
BstKTI	GATC	6 cut(s)	95, 298, 302, 427, 522, 535
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	6 cut(s)	92, 295, 299, 424, 519, 532
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	355
BstSNI	TACGTA	1 cut(s)	719
BstZ17I	GTATAC	1 cut(s)	345
Bsu15I	ATCGAT	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	298
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	3 cut(s)	415, 561, 639
CfoI	GCGC	2 cut(s)	433, 697
Cfr13I	GGNCC	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	7 cut(s)	30, 183, 236, 283, 443, 490, 638
CviJI	RGCY	5 cut(s)	40, 287, 483, 515, 563
CviKI_1	RGCY	5 cut(s)	40, 287, 483, 515, 563
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	3 cut(s)	255, 365, 629
DpnI	GATC	6 cut(s)	94, 297, 301, 426, 521, 534
DpnII	GATC	6 cut(s)	92, 295, 299, 424, 519, 532
Eco105I	TACGTA	1 cut(s)	719
Eco130I	CCWWGG	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	696
Eco57I	CTGAAG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	7 cut(s)	33, 186, 239, 286, 446, 493, 641
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	7 cut(s)	29, 182, 235, 282, 442, 489, 637
FauNDI	CATATG	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	344
FokI	GGATG	1 cut(s)	283
GlaI	GCGC	2 cut(s)	432, 696
GsaI	CCCAGC	2 cut(s)	170, 519
HaeII	RGCGCY	2 cut(s)	434, 698
HhaI	GCGC	2 cut(s)	433, 697
Hin1II	CATG	7 cut(s)	33, 186, 239, 286, 446, 493, 641
Hin6I	GCGC	2 cut(s)	431, 695
HinP1I	GCGC	2 cut(s)	431, 695
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	5 cut(s)	49, 86, 360, 578, 725
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	4 cut(s)	100, 211, 345, 388
Hpy188I	TCNGA	3 cut(s)	256, 616, 632
Hpy188III	TCNNGA	5 cut(s)	46, 90, 217, 364, 575
Hpy8I	GTNNAC	4 cut(s)	100, 211, 345, 388
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	2 cut(s)	207, 718
HpyCH4V	TGCA	6 cut(s)	19, 110, 489, 504, 559, 641
HpyF3I	CTNAG	3 cut(s)	255, 365, 629
HpySE526I	ACGT	2 cut(s)	207, 718
Hsp92II	CATG	7 cut(s)	33, 186, 239, 286, 446, 493, 641
HspAI	GCGC	2 cut(s)	431, 695
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	6 cut(s)	92, 295, 299, 424, 519, 532
LmnI	GCTCC	2 cut(s)	45, 473
MaeII	ACGT	2 cut(s)	207, 718
MalI	GATC	6 cut(s)	94, 297, 301, 426, 521, 534
MboI	GATC	6 cut(s)	92, 295, 299, 424, 519, 532
MboII	GAAGA	1 cut(s)	44
MluCI	AATT	4 cut(s)	10, 250, 494, 659
MlyI	GAGTC	3 cut(s)	80, 572, 719
MmeI	TCCRAC	2 cut(s)	109, 575
MnlI	CCTC	3 cut(s)	53, 505, 658
Mph1103I	ATGCAT	1 cut(s)	491
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	357
NcoI	CCATGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	6 cut(s)	92, 295, 299, 424, 519, 532
NlaIII	CATG	7 cut(s)	33, 186, 239, 286, 446, 493, 641
NlaIV	GGNNCC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	491
NspI	RCATGY	1 cut(s)	641
PaeI	GCATGC	1 cut(s)	641
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	49, 360
PleI	GAGTC	3 cut(s)	80, 572, 719
PpsI	GAGTC	3 cut(s)	80, 572, 719
Ppu21I	YACGTR	1 cut(s)	719
PsiI	TTATAA	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	355
PspFI	CCCAGC	2 cut(s)	166, 515
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	243
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	585
Sau3AI	GATC	6 cut(s)	92, 295, 299, 424, 519, 532
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	3 cut(s)	80, 572, 719
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	5 cut(s)	121, 210, 467, 669, 721
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
SnaBI	TACGTA	1 cut(s)	719
SphI	GCATGC	1 cut(s)	641
Sse9I	AATT	4 cut(s)	10, 250, 494, 659
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	2 cut(s)	210, 721
TaqI	TCGA	3 cut(s)	59, 298, 522
TasI	AATT	4 cut(s)	10, 250, 494, 659
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	49, 360
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	102
TspDTI	ATGAA	5 cut(s)	17, 287, 506, 689, 693
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	2 cut(s)	10, 250
XceI	RCATGY	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.