RchiOBHm_Chr4g0411981

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002404
Physical Location & Seq
Forward (+)
35734268 .. 35735375
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38274

Sequence Viewer

Length: 591 bp
ATGAGGCACTGGTCTATAGTATTCTACAGCTGTGCACCGCACTTCTATTTGCATTTGATGTTTTTTTATATGCTCTTGCAGTATCAATGGATGAAAAAGGACATGGCTTCAGTTGATCGATCTAAAACTCCTTGGTTGATATTTATGGGGCATAGACCAATGTATACATCTGCCCCTGGATTCCTGAGTGTTGATGAGAAATTCGTTGACAAAGTTGAACCATTACTTCTGGCAAGCAAAGTTGATCTAGTGCTGTTTGGTCATGTCCATAACTACGAGCGAACCTGCTCCATTTATAAGAGCCAATGCATGAAATTGCCTTGCAAAGATGAGGCTGGGATCGACACATATGATCACAGCAACTACAGTGCCCCAGTGCAAGCCATAATTGGAATGGCTGGCTTTTCCTTGGACAAGTTTCCCAGTGGTATTAACAATAGTTGGAGTTTATCAAGGCATTCTGAATATGGTTCTCTCAGAGCGCATGCAACAAGGACAGATATCAAATTAGAGGTGAGTATGTATGAAAACTTGAGATTAGCGCTTCATACTGTAAGACATTTACGTATGGACTCAATGACATTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

196

Amino Acids

22.83

Weight (kDa)

8.62

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 28 - 92 1.2e-07 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
Acc36I ACCTGC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 164
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 93
AfeI AGCGCT 1 cut(s) 543
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 37
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 1 cut(s) 347
Aor51HI AGCGCT 1 cut(s) 543
ApaLI GTGCAC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 200
AspLEI GCGC 2 cut(s) 484, 544
AsuHPI GGTGA 1 cut(s) 526
BaeGI GKGCMC 2 cut(s) 37, 373
Bbv12I GWGCWC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 177
BclI TGATCA 1 cut(s) 352
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 3 cut(s) 15, 25, 364
BfoI RGCGCY 1 cut(s) 545
BfuAI ACCTGC 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 177
BmrI ACTGGG 2 cut(s) 368, 417
BmuI ACTGGG 2 cut(s) 368, 417
BpuEI CTTGAG 1 cut(s) 553
Bsa29I ATCGAT 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 566
BsaJI CCNNGG 3 cut(s) 131, 175, 408
Bse1I ACTGG 3 cut(s) 14, 374, 423
BseBI CCWGG 1 cut(s) 177
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 131, 175, 408
BseGI GGATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 176, 490
BseNI ACTGG 3 cut(s) 14, 374, 423
BseSI GKGCMC 2 cut(s) 37, 373
BseYI CCCAGC 1 cut(s) 335
BshVI ATCGAT 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 37, 373
Bsp143I GATC 5 cut(s) 115, 119, 244, 339, 352
BspACI CCGC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 177, 489
BspDI ATCGAT 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 1 cut(s) 347
BsrI ACTGG 3 cut(s) 14, 374, 423
BssECI CCNNGG 3 cut(s) 131, 175, 408
BssMI GATC 5 cut(s) 115, 119, 244, 339, 352
BssNAI GTATAC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 131, 408
Bst1107I GTATAC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 368, 553
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 4 cut(s) 235, 381, 400, 486
BstDEI CTNAG 2 cut(s) 185, 476
BstF5I GGATG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 2 cut(s) 484, 544
BstKTI GATC 5 cut(s) 118, 122, 247, 342, 355
BstMBI GATC 5 cut(s) 115, 119, 244, 339, 352
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 3 cut(s) 15, 25, 364
BstSLI GKGCMC 2 cut(s) 37, 373
BstSNI TACGTA 1 cut(s) 566
BstZ17I GTATAC 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 118
BsuTUI ATCGAT 1 cut(s) 118
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 4 cut(s) 7, 373, 381, 430
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 4 cut(s) 235, 381, 400, 486
CfoI GCGC 2 cut(s) 484, 544
ClaI ATCGAT 1 cut(s) 118
CviAII CATG 4 cut(s) 103, 263, 310, 485
CviJI RGCY 7 cut(s) 30, 107, 303, 335, 383, 398, 402
CviKI_1 RGCY 7 cut(s) 30, 107, 303, 335, 383, 398, 402
DdeI CTNAG 2 cut(s) 185, 476
DpnI GATC 5 cut(s) 117, 121, 246, 341, 354
DpnII GATC 5 cut(s) 115, 119, 244, 339, 352
Eco105I TACGTA 1 cut(s) 566
Eco130I CCWWGG 2 cut(s) 131, 408
Eco32I GATATC 1 cut(s) 502
Eco47III AGCGCT 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 175
EcoRV GATATC 1 cut(s) 502
EcoT14I CCWWGG 2 cut(s) 131, 408
EcoT22I ATGCAT 1 cut(s) 311
ErhI CCWWGG 2 cut(s) 131, 408
FaeI CATG 4 cut(s) 106, 266, 313, 488
FatI CATG 4 cut(s) 102, 262, 309, 484
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 352
FblI GTMKAC 1 cut(s) 164
FokI GGATG 1 cut(s) 103
FspBI CTAG 1 cut(s) 248
GlaI GCGC 2 cut(s) 483, 543
GsaI CCCAGC 1 cut(s) 339
HaeII RGCGCY 1 cut(s) 545
HhaI GCGC 2 cut(s) 484, 544
Hin1II CATG 4 cut(s) 106, 266, 313, 488
Hin6I GCGC 2 cut(s) 482, 542
HinP1I GCGC 2 cut(s) 482, 542
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 2 cut(s) 180, 572
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 3 cut(s) 35, 165, 208
Hpy188I TCNGA 2 cut(s) 463, 479
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 3 cut(s) 35, 165, 208
HpyCH4III ACNGT 2 cut(s) 368, 553
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 7 cut(s) 35, 52, 79, 309, 324, 379, 488
HpyF3I CTNAG 2 cut(s) 185, 476
HpySE526I ACGT 1 cut(s) 565
Hsp92II CATG 4 cut(s) 106, 266, 313, 488
HspAI GCGC 2 cut(s) 482, 542
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 5 cut(s) 115, 119, 244, 339, 352
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 9 cut(s) 162, 189, 197, 215, 298, 321, 384, 387, 436
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 565
MalI GATC 5 cut(s) 117, 121, 246, 341, 354
MboI GATC 5 cut(s) 115, 119, 244, 339, 352
MhlI GDGCHC 2 cut(s) 37, 373
MluCI AATT 4 cut(s) 200, 314, 387, 506
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 2 cut(s) 325, 505
Mph1103I ATGCAT 1 cut(s) 311
MseI TTAA 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 177
NdeI CATATG 1 cut(s) 349
NdeII GATC 5 cut(s) 115, 119, 244, 339, 352
NlaIII CATG 4 cut(s) 106, 266, 313, 488
NsiI ATGCAT 1 cut(s) 311
NspI RCATGY 1 cut(s) 488
PaeI GCATGC 1 cut(s) 488
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 180
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
Ppu21I YACGTR 1 cut(s) 566
PsiI TTATAA 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 30
SaqAI TTAA 1 cut(s) 432
Sau3AI GATC 5 cut(s) 115, 119, 244, 339, 352
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 2 cut(s) 37, 373
SetI ASST 4 cut(s) 32, 287, 516, 568
SfcI CTRYAG 3 cut(s) 15, 25, 364
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
SnaBI TACGTA 1 cut(s) 566
SphI GCATGC 1 cut(s) 488
Sse9I AATT 4 cut(s) 200, 314, 387, 506
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 2 cut(s) 131, 408
TaaI ACNGT 2 cut(s) 368, 553
TaiI ACGT 1 cut(s) 568
TaqI TCGA 2 cut(s) 118, 342
TasI AATT 4 cut(s) 200, 314, 387, 506
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 4 cut(s) 14, 373, 381, 430
TspDTI ATGAA 4 cut(s) 107, 326, 536, 540
TspRI CASTG 4 cut(s) 14, 373, 381, 430
VneI GTGCAC 1 cut(s) 33
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 1 cut(s) 248
Zsp2I ATGCAT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.