Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001522.1

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Forward (+)

51019 .. 52168

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001522.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgagcactgatcctgactacctcagttgcaagaagaaggaatgcaaaaagtatcagaatggtaccagtcactgtgctatctccacctgcagtggttcgttaacatttcatgttattaacatcagaaccaacatcgaattcgtcttgttttctgatggatttgaggtcccttgcattttgaagaaagcaaaacctctgaaatttgccaatccaaagaagccactgtatggacatctctcgagcatagactcaactggaacatcgatgaaattaacatgggttagtggagatgagaaacctcagcaagtacaatatggagatggaaaatcacagacttcagtagttaccacattttcacaagatgacatgcagagttcacctgctataccaagtccagccaaagactttgggtggcatgatccaggcttcattcattcagcagtgatgacaggacttgagccttcatctagcttctcttatagatatggaagtgattcagttggttggagtgatcgaatccaatttcgcactcctcctgtgggaggatctgatgaactcaaatttctagcatttggcgacatgggaaaggctcctcgtgattcttctgtagagcattatattcaggtatatgaattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

212

Amino Acids

23.39

Weight (kDa)

6.58

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	95, 388
Acc36I	ACCTGC	2 cut(s)	95, 388
Acc65I	GGTACC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	227
AclWI	GGATC	3 cut(s)	5, 413, 553
AcsI	RAATTY	3 cut(s)	137, 200, 560
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	64, 309
AfiI	CCNNNNNNNGG	3 cut(s)	227, 539, 542
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	421
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	1 cut(s)	471
AluI	AGCT	1 cut(s)	471
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	3 cut(s)	5, 413, 553
AlwNI	CAGNNNCTG	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	238
ApoI	RAATTY	3 cut(s)	137, 200, 560
Asp700I	GAANNNNTTC	1 cut(s)	493
Asp718I	GGTACC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	369
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	149, 314
BciT130I	CCWGG	1 cut(s)	423
BfaI	CTAG	2 cut(s)	468, 566
BfmI	CTRYAG	2 cut(s)	88, 606
BfuAI	ACCTGC	2 cut(s)	95, 388
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	3 cut(s)	64, 168, 591
BmrFI	CCNGG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	476
Bsa29I	ATCGAT	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 539, 542
Bse1I	ACTGG	2 cut(s)	66, 259
BseBI	CCWGG	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	263
BseLI	CCNNNNNNNGG	3 cut(s)	227, 539, 542
BseMII	CTCAG	2 cut(s)	37, 314
BseNI	ACTGG	2 cut(s)	66, 259
BseRI	GAGGAG	2 cut(s)	522, 582
BshNI	GGYRCC	1 cut(s)	62
BshVI	ATCGAT	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	227, 539, 542
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	10, 418, 511, 545
BspCNI	CTCAG	2 cut(s)	36, 313
BspDI	ATCGAT	1 cut(s)	263
BspLI	GGNNCC	3 cut(s)	64, 168, 591
BspMAI	CTGCAG	1 cut(s)	92
BspMI	ACCTGC	2 cut(s)	95, 388
BspPI	GGATC	3 cut(s)	5, 413, 553
BspT107I	GGYRCC	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	66, 259
BssMI	GATC	4 cut(s)	10, 418, 511, 545
BssSI	CACGAG	1 cut(s)	594
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	74, 225
BstDEI	CTNAG	2 cut(s)	23, 300
BstENI	CCTNNNNNAGG	1 cut(s)	540
BstKTI	GATC	4 cut(s)	13, 421, 514, 548
BstMBI	GATC	4 cut(s)	10, 418, 511, 545
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	2 cut(s)	88, 606
BstX2I	RGATCY	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	545
Bsu15I	ATCGAT	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	263
BtsI	GCAGTG	2 cut(s)	97, 447
BtsIMutI	CAGTG	5 cut(s)	6, 70, 97, 221, 447
BveI	ACCTGC	2 cut(s)	95, 388
CaiI	CAGNNNCTG	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	63, 308
CviAII	CATG	5 cut(s)	110, 276, 367, 416, 580
CviJI	RGCY	6 cut(s)	220, 398, 426, 460, 471, 590
CviKI_1	RGCY	6 cut(s)	220, 398, 426, 460, 471, 590
CviQI	GTAC	2 cut(s)	63, 308
DdeI	CTNAG	2 cut(s)	23, 300
DpnI	GATC	4 cut(s)	12, 420, 513, 547
DpnII	GATC	4 cut(s)	10, 418, 511, 545
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	421
FaeI	CATG	5 cut(s)	113, 279, 370, 419, 583
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	109, 275, 366, 415, 579
FspBI	CTAG	2 cut(s)	468, 566
Hin1II	CATG	5 cut(s)	113, 279, 370, 419, 583
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HinfI	GANTC	4 cut(s)	248, 494, 516, 599
HpaI	GTTAAC	1 cut(s)	102
HphI	GGTGA	1 cut(s)	369
Hpy166II	GTNNAC	2 cut(s)	102, 377
Hpy188I	TCNGA	5 cut(s)	57, 125, 154, 198, 550
Hpy188III	TCNNGA	3 cut(s)	14, 238, 596
Hpy8I	GTNNAC	2 cut(s)	102, 377
HpyAV	CCTTC	2 cut(s)	31, 471
HpyCH4III	ACNGT	2 cut(s)	74, 225
HpyCH4V	TGCA	5 cut(s)	30, 45, 90, 174, 370
HpyF3I	CTNAG	2 cut(s)	23, 300
Hsp92II	CATG	5 cut(s)	113, 279, 370, 419, 583
KpnI	GGTACC	1 cut(s)	66
KspAI	GTTAAC	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	10, 418, 511, 545
LmnI	GCTCC	1 cut(s)	595
MaeI	CTAG	2 cut(s)	468, 566
MaeIII	GTNAC	2 cut(s)	68, 343
MalI	GATC	4 cut(s)	12, 420, 513, 547
MboI	GATC	4 cut(s)	10, 418, 511, 545
MboII	GAAGA	3 cut(s)	46, 193, 594
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	6 cut(s)	137, 200, 269, 521, 560, 632
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	7 cut(s)	32, 157, 204, 309, 536, 543, 603
MroXI	GAANNNNTTC	1 cut(s)	493
MseI	TTAA	3 cut(s)	101, 117, 272
MspR9I	CCNGG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	423
NdeII	GATC	4 cut(s)	10, 418, 511, 545
NlaIII	CATG	5 cut(s)	113, 279, 370, 419, 583
NlaIV	GGNNCC	3 cut(s)	64, 168, 591
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	238
PaqCI	CACCTGC	2 cut(s)	95, 388
PctI	GAATGC	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	3 cut(s)	494, 516, 599
PflMI	CCANNNNNTGG	1 cut(s)	227
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	64, 168, 591
PspPI	GGNCC	1 cut(s)	166
PspPPI	RGGWCCY	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	545
RsaI	GTAC	2 cut(s)	64, 309
RsaNI	GTAC	2 cut(s)	63, 308
SaqAI	TTAA	3 cut(s)	101, 117, 272
Sau3AI	GATC	4 cut(s)	10, 418, 511, 545
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	24, 89, 168, 196, 301, 382, 473, 627
SfcI	CTRYAG	2 cut(s)	88, 606
Sfr274I	CTCGAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	166
SlaI	CTCGAG	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	238, 455
SmoI	CTYRAG	2 cut(s)	238, 455
Sse9I	AATT	6 cut(s)	137, 200, 269, 521, 560, 632
SspMI	CTAG	2 cut(s)	468, 566
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	74, 225
TaqI	TCGA	4 cut(s)	135, 239, 263, 514
TasI	AATT	6 cut(s)	137, 200, 269, 521, 560, 632
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	3 cut(s)	494, 516, 599
Tru1I	TTAA	3 cut(s)	101, 117, 272
Tru9I	TTAA	3 cut(s)	101, 117, 272
TscAI	CASTG	5 cut(s)	13, 77, 97, 228, 447
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	6 cut(s)	98, 281, 418, 422, 453, 567
TspRI	CASTG	5 cut(s)	13, 77, 97, 228, 447
Van91I	CCANNNNNTGG	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	540
XapI	RAATTY	3 cut(s)	137, 200, 560
XceI	RCATGY	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	493
XspI	CTAG	2 cut(s)	468, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.