Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002539.1

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Reverse (-)

220838 .. 224009

Gene Structure 3172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002539.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atgagcactgatcctgactacctcagttgcaagaagaaggaatgcaaaaagtatcagaatggtaccagtcactgtgctatctccacctgcagtggttcgataacatttcatgttattaacatcagaaccgacatcgaattcgtcttgttttctgatggatttgaggtcccttgcattttgaagaaagcaaaccctctgaaatttgccaatccaaagaagccactgtatggacatctctcgagcatagactcaactggaacatcgatgaaattaacatgggtcagtggagatgagaaacctcagcaagtacaatatggagatggaaaatcacagacttcagtagttaccacattttcacaagatgacatgcagagttcacctgctataccaagtccagccaaagactttgggtggcatgatccaggcttcattcattccgcagtgatgacaggacttgagccttcatctagcttctcttatagatatggaagggactatatagactctggatcagtgtacgttcttgcagattcgggtggggaagttggagttccctatgagacttactttccaatgccaaccccagcaaaggataaaccatggtattccatagaacaaggaagcgtccacatcacgatgatttcaacagagcatgactggaccaaaaattctgagcagtatcaatggatgaaaaaggacatggcttcagttgatcgatctaaaactccttggttgatatttatggggcatagaccaatgtatacatctgcccctggattcctgagtgttgatgaaaaatttgttgacgaagttgaaccattacttctggcaagcaaagttgatctggccctgtttggtcatgtccataactacgagcgaacctgctccatttataagagccggtgcatgaaattgcctagcaaagatgaggctgggatagacacatatgatcacagaaactacagtgccccagtgcaagctataattggaatggctggcttttccttggacaagtttcccagtggttttgtgaatgcaaacacaagaaaagttgacgacagcttccacattacaaaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

360

Amino Acids

40.21

Weight (kDa)

6.18

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
AarI	CACCTGC	2 cut(s)	95, 388
Acc36I	ACCTGC	3 cut(s)	95, 388, 890
Acc65I	GGTACC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	761
AciI	CCGC	1 cut(s)	438
AclWI	GGATC	3 cut(s)	5, 413, 517
AcsI	RAATTY	4 cut(s)	137, 200, 667, 797
AcuI	CTGAAG	2 cut(s)	321, 690
AfaI	GTAC	3 cut(s)	64, 309, 518
AfiI	CCNNNNNNNGG	2 cut(s)	227, 589
AgsI	TTSAA	3 cut(s)	181, 645, 815
AjnI	CCWGG	2 cut(s)	421, 772
AluBI	AGCT	3 cut(s)	471, 980, 1062
AluI	AGCT	3 cut(s)	471, 980, 1062
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	3 cut(s)	5, 413, 517
AlwNI	CAGNNNCTG	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	846
ApoI	RAATTY	4 cut(s)	137, 200, 667, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
Asp718I	GGTACC	1 cut(s)	62
AspS9I	GGNCC	3 cut(s)	166, 660, 847
AsuHPI	GGTGA	1 cut(s)	369
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	166, 660
BaeGI	GKGCMC	1 cut(s)	970
BanI	GGYRCC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	149, 314
BciT130I	CCWGG	2 cut(s)	423, 774
BclI	TGATCA	1 cut(s)	949
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	2 cut(s)	468, 918
BfmI	CTRYAG	2 cut(s)	88, 961
BfuAI	ACCTGC	3 cut(s)	95, 388, 890
Bme1390I	CCNGG	2 cut(s)	423, 774
Bme18I	GGWCC	2 cut(s)	166, 660
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	166, 660, 847
BmiI	GGNNCC	2 cut(s)	64, 168
BmrFI	CCNGG	2 cut(s)	423, 774
BmrI	ACTGGG	2 cut(s)	965, 1014
BmuI	ACTGGG	2 cut(s)	965, 1014
Bpu10I	CCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	476
Bsa29I	ATCGAT	2 cut(s)	263, 715
BsaJI	CCNNGG	4 cut(s)	599, 728, 772, 1005
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 589
Bse118I	RCCGGY	1 cut(s)	900
Bse1I	ACTGG	5 cut(s)	66, 259, 662, 971, 1020
BseBI	CCWGG	2 cut(s)	423, 774
BseCI	ATCGAT	2 cut(s)	263, 715
BseDI	CCNNGG	4 cut(s)	599, 728, 772, 1005
BseGI	GGATG	1 cut(s)	693
BseLI	CCNNNNNNNGG	2 cut(s)	227, 589
BseMII	CTCAG	4 cut(s)	37, 314, 663, 773
BseNI	ACTGG	5 cut(s)	66, 259, 662, 971, 1020
BseSI	GKGCMC	1 cut(s)	970
BseYI	CCCAGC	2 cut(s)	583, 932
BshFI	GGCC	1 cut(s)	848
BshNI	GGYRCC	1 cut(s)	62
BshVI	ATCGAT	2 cut(s)	263, 715
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	901
BslFI	GGGAC	2 cut(s)	152, 506
BslI	CCNNNNNNNGG	2 cut(s)	227, 589
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	2 cut(s)	152, 506
BsmI	GAATGC	2 cut(s)	47, 1039
BsnI	GGCC	1 cut(s)	848
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	8, 970
Bsp143I	GATC	7 cut(s)	10, 418, 509, 712, 716, 841, 949
Bsp19I	CCATGG	1 cut(s)	599
BspACI	CCGC	1 cut(s)	438
BspANI	GGCC	1 cut(s)	848
BspCNI	CTCAG	4 cut(s)	36, 313, 664, 774
BspDI	ATCGAT	2 cut(s)	263, 715
BspLI	GGNNCC	2 cut(s)	64, 168
BspMAI	CTGCAG	1 cut(s)	92
BspMI	ACCTGC	3 cut(s)	95, 388, 890
BspPI	GGATC	3 cut(s)	5, 413, 517
BspT107I	GGYRCC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	900
BsrI	ACTGG	5 cut(s)	66, 259, 662, 971, 1020
BssAI	RCCGGY	1 cut(s)	900
BssECI	CCNNGG	4 cut(s)	599, 728, 772, 1005
BssMI	GATC	7 cut(s)	10, 418, 509, 712, 716, 841, 949
BssNAI	GTATAC	1 cut(s)	762
BssT1I	CCWWGG	3 cut(s)	599, 728, 1005
Bst1107I	GTATAC	1 cut(s)	762
Bst2UI	CCWGG	2 cut(s)	423, 774
Bst4CI	ACNGT	3 cut(s)	74, 225, 965
BstC8I	GCNNGC	3 cut(s)	832, 978, 997
BstDEI	CTNAG	4 cut(s)	23, 300, 672, 782
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	1 cut(s)	693
BstKTI	GATC	7 cut(s)	13, 421, 512, 715, 719, 844, 952
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	7 cut(s)	10, 418, 509, 712, 716, 841, 949
BstNI	CCWGG	2 cut(s)	423, 774
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	421, 772
BstSFI	CTRYAG	2 cut(s)	88, 961
BstSLI	GKGCMC	1 cut(s)	970
BstZ17I	GTATAC	1 cut(s)	762
Bsu15I	ATCGAT	2 cut(s)	263, 715
BsuRI	GGCC	1 cut(s)	848
BsuTUI	ATCGAT	2 cut(s)	263, 715
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	693
BtsI	GCAGTG	2 cut(s)	97, 447
BveI	ACCTGC	3 cut(s)	95, 388, 890
Cac8I	GCNNGC	3 cut(s)	832, 978, 997
CaiI	CAGNNNCTG	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	900
Cfr13I	GGNCC	3 cut(s)	166, 660, 847
ClaI	ATCGAT	2 cut(s)	263, 715
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	3 cut(s)	63, 308, 517
CviAII	CATG	9 cut(s)	110, 276, 367, 416, 600, 653, 700, 860, 907
CviQI	GTAC	3 cut(s)	63, 308, 517
DdeI	CTNAG	4 cut(s)	23, 300, 672, 782
DpnI	GATC	7 cut(s)	12, 420, 511, 714, 718, 843, 951
DpnII	GATC	7 cut(s)	10, 418, 509, 712, 716, 841, 949
Eco130I	CCWWGG	3 cut(s)	599, 728, 1005
Eco47I	GGWCC	2 cut(s)	166, 660
Eco57I	CTGAAG	2 cut(s)	321, 690
Eco88I	CYCGRG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	421, 772
EcoT14I	CCWWGG	3 cut(s)	599, 728, 1005
ErhI	CCWWGG	3 cut(s)	599, 728, 1005
FaeI	CATG	9 cut(s)	113, 279, 370, 419, 603, 656, 703, 863, 910
FaqI	GGGAC	2 cut(s)	152, 506
FatI	CATG	9 cut(s)	109, 275, 366, 415, 599, 652, 699, 859, 906
FauNDI	CATATG	1 cut(s)	946
FbaI	TGATCA	1 cut(s)	949
FblI	GTMKAC	1 cut(s)	761
FokI	GGATG	1 cut(s)	700
FspBI	CTAG	2 cut(s)	468, 918
GsaI	CCCAGC	2 cut(s)	587, 936
HaeIII	GGCC	1 cut(s)	848
HapII	CCGG	1 cut(s)	901
HgaI	GACGC	1 cut(s)	613
Hin1II	CATG	9 cut(s)	113, 279, 370, 419, 603, 656, 703, 863, 910
HincII	GTYRAC	2 cut(s)	805, 1054
HindII	GTYRAC	2 cut(s)	805, 1054
HinfI	GANTC	4 cut(s)	248, 503, 530, 777
HpaII	CCGG	1 cut(s)	901
HphI	GGTGA	1 cut(s)	369
Hpy166II	GTNNAC	6 cut(s)	377, 517, 628, 762, 805, 1054
Hpy188I	TCNGA	5 cut(s)	57, 125, 154, 198, 673
Hpy188III	TCNNGA	5 cut(s)	14, 238, 507, 634, 781
Hpy8I	GTNNAC	6 cut(s)	377, 517, 628, 762, 805, 1054
HpyAV	CCTTC	3 cut(s)	31, 471, 483
HpyCH4III	ACNGT	3 cut(s)	74, 225, 965
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	9 cut(s)	30, 45, 90, 174, 370, 527, 906, 976, 1037
HpyF3I	CTNAG	4 cut(s)	23, 300, 672, 782
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	9 cut(s)	113, 279, 370, 419, 603, 656, 703, 863, 910
KpnI	GGTACC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	949
Kzo9I	GATC	7 cut(s)	10, 418, 509, 712, 716, 841, 949
LmnI	GCTCC	1 cut(s)	890
MaeI	CTAG	2 cut(s)	468, 918
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	68, 343
MalI	GATC	7 cut(s)	12, 420, 511, 714, 718, 843, 951
MboI	GATC	7 cut(s)	10, 418, 509, 712, 716, 841, 949
MboII	GAAGA	2 cut(s)	46, 193
MhlI	GDGCHC	2 cut(s)	8, 970
MluCI	AATT	7 cut(s)	137, 200, 269, 667, 797, 911, 984
MlyI	GAGTC	2 cut(s)	242, 497
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	5 cut(s)	32, 157, 204, 309, 922
MseI	TTAA	2 cut(s)	117, 272
MslI	CAYNNNNRTG	1 cut(s)	635
MspI	CCGG	1 cut(s)	901
MspR9I	CCNGG	2 cut(s)	423, 774
Mva1269I	GAATGC	2 cut(s)	47, 1039
MvaI	CCWGG	2 cut(s)	423, 774
NcoI	CCATGG	1 cut(s)	599
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	7 cut(s)	10, 418, 509, 712, 716, 841, 949
NlaIII	CATG	9 cut(s)	113, 279, 370, 419, 603, 656, 703, 863, 910
NlaIV	GGNNCC	2 cut(s)	64, 168
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	238
PaqCI	CACCTGC	2 cut(s)	95, 388
PctI	GAATGC	2 cut(s)	47, 1039
PfeI	GAWTC	2 cut(s)	530, 777
PflMI	CCANNNNNTGG	1 cut(s)	227
PleI	GAGTC	2 cut(s)	242, 497
PpsI	GAGTC	2 cut(s)	242, 497
PpuMI	RGGWCCY	1 cut(s)	166
PsiI	TTATAA	1 cut(s)	894
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	421, 772
PspFI	CCCAGC	2 cut(s)	583, 932
PspGI	CCWGG	2 cut(s)	421, 772
PspN4I	GGNNCC	2 cut(s)	64, 168
PspPI	GGNCC	3 cut(s)	166, 660, 847
PspPPI	RGGWCCY	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	72
RsaI	GTAC	3 cut(s)	64, 309, 518
RsaNI	GTAC	3 cut(s)	63, 308, 517
RseI	CAYNNNNRTG	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	117, 272
Sau3AI	GATC	7 cut(s)	10, 418, 509, 712, 716, 841, 949
Sau96I	GGNCC	3 cut(s)	166, 660, 847
SchI	GAGTC	2 cut(s)	242, 497
ScrFI	CCNGG	2 cut(s)	423, 774
SduI	GDGCHC	2 cut(s)	8, 970
SfcI	CTRYAG	2 cut(s)	88, 961
Sfr274I	CTCGAG	1 cut(s)	238
SinI	GGWCC	2 cut(s)	166, 660
SlaI	CTCGAG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	2 cut(s)	238, 455
SmoI	CTYRAG	2 cut(s)	238, 455
Sse9I	AATT	7 cut(s)	137, 200, 269, 667, 797, 911, 984
SsiI	CCGC	1 cut(s)	438
SspMI	CTAG	2 cut(s)	468, 918
StyD4I	CCNGG	2 cut(s)	421, 772
StyI	CCWWGG	3 cut(s)	599, 728, 1005
TaaI	ACNGT	3 cut(s)	74, 225, 965
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	5 cut(s)	98, 135, 239, 263, 715
TasI	AATT	7 cut(s)	137, 200, 269, 667, 797, 911, 984
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	2 cut(s)	530, 777
Tru1I	TTAA	2 cut(s)	117, 272
Tru9I	TTAA	2 cut(s)	117, 272
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	8 cut(s)	98, 281, 418, 422, 453, 704, 807, 923
Van91I	CCANNNNNTGG	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	166, 660
XapI	RAATTY	4 cut(s)	137, 200, 667, 797
XceI	RCATGY	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	761
XspI	CTAG	2 cut(s)	468, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.