Rmu_sc0003855.1_g000001

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003855.1
OG0002404
Physical Location & Seq
Forward (+)
1 .. 6034
6034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003855.1_g000001.1.cds

Sequence Viewer

Length: 695 bp
ctctttttctctcgctcttctctgaaaccctagcgctctcctccctctcctgctctctttccacagctactgtctctccctcattgaactactgcctccgtcccctcaccggcgccatcgcctctgccggtgcttctcttccaacgccaccaagtcgttcctcagagatccgaaccccaactggtccaacctgcgtccaaggagtttatccttctcgattggtgcgacttcgagcaccaaatgccaacgacggaggaaccaaacacaaccgcaattacgacggtgcaaccagtatcagtggttcagttggctggagtgatcgaatccaattccacactccccctgtgggaggatctgatgaactcaaatttcttgcatttggcgacatgggaaaggctcctcgtgattcttctgtcgagcattatattcagtatcaatggatgaaaagggacatggcttcagttgatcgatctgaaactccttggttgatatttatggggttgatctggcgctgtttggtcatgtccataactacgagcgaacctgctcagagccaatgcatgaaattaccttgcaaagatgaggctgggatcgacacatatgatcacagcaactacagtgccccagtgcaagccataattggaatggctggcttttccttggacaagtttccaagcggtgtaagtccttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

230

Amino Acids

24.78

Weight (kDa)

7.05

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 199, 552
AccB1I GGYRCC 1 cut(s) 112
AciI CCGC 2 cut(s) 270, 677
AclWI GGATC 3 cut(s) 162, 360, 598
AcsI RAATTY 1 cut(s) 367
AcuI CTGAAG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 113
AfeI AGCGCT 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 109, 346, 349
AgsI TTSAA 1 cut(s) 87
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 3 cut(s) 162, 360, 598
AlwNI CAGNNNCTG 1 cut(s) 70
Aor51HI AGCGCT 1 cut(s) 35
ApoI RAATTY 1 cut(s) 367
AspLEI GCGC 3 cut(s) 36, 115, 512
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 99
AvaII GGWCC 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 624
BanI GGYRCC 1 cut(s) 112
BauI CACGAG 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 1 cut(s) 124
BclI TGATCA 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 3 cut(s) 37, 116, 513
BfuAI ACCTGC 2 cut(s) 199, 552
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 3 cut(s) 114, 258, 398
BmrI ACTGGG 1 cut(s) 619
BmuI ACTGGG 1 cut(s) 619
BpmI CTGGAG 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 198, 481, 659
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 346, 349
Bse118I RCCGGY 2 cut(s) 109, 127
Bse1I ACTGG 3 cut(s) 186, 290, 625
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 3 cut(s) 198, 481, 659
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 3 cut(s) 109, 346, 349
BseMII CTCAG 2 cut(s) 176, 562
BseNI ACTGG 3 cut(s) 186, 290, 625
BseRI GAGGAG 2 cut(s) 30, 389
BseSI GKGCMC 1 cut(s) 624
BseYI CCCAGC 1 cut(s) 586
BshNI GGYRCC 1 cut(s) 112
BshVI ATCGAT 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 2 cut(s) 110, 128
BslFI GGGAC 2 cut(s) 86, 463
BslI CCNNNNNNNGG 3 cut(s) 109, 346, 349
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 86, 463
Bsp1286I GDGCHC 2 cut(s) 237, 624
Bsp143I GATC 8 cut(s) 167, 318, 352, 465, 469, 503, 590, 603
BspACI CCGC 2 cut(s) 270, 677
BspCNI CTCAG 2 cut(s) 175, 561
BspDI ATCGAT 1 cut(s) 468
BspLI GGNNCC 3 cut(s) 114, 258, 398
BspMI ACCTGC 2 cut(s) 199, 552
BspPI GGATC 3 cut(s) 162, 360, 598
BspQI GCTCTTC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 112
BsrFI RCCGGY 2 cut(s) 109, 127
BsrI ACTGG 3 cut(s) 186, 290, 625
BssAI RCCGGY 2 cut(s) 109, 127
BssECI CCNNGG 3 cut(s) 198, 481, 659
BssMI GATC 8 cut(s) 167, 318, 352, 465, 469, 503, 590, 603
BssNI GRCGYC 1 cut(s) 113
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 3 cut(s) 198, 481, 659
Bst2BI CACGAG 1 cut(s) 401
Bst4CI ACNGT 3 cut(s) 72, 283, 619
Bst6I CTCTTC 2 cut(s) 22, 143
BstACI GRCGYC 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 632, 651
BstDEI CTNAG 2 cut(s) 162, 548
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 446
BstH2I RGCGCY 3 cut(s) 37, 116, 513
BstHHI GCGC 3 cut(s) 36, 115, 512
BstKTI GATC 8 cut(s) 170, 321, 355, 468, 472, 506, 593, 606
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 8 cut(s) 167, 318, 352, 465, 469, 503, 590, 603
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 1 cut(s) 624
BstX2I RGATCY 2 cut(s) 167, 352
BstYI RGATCY 2 cut(s) 167, 352
Bsu15I ATCGAT 1 cut(s) 468
BsuTUI ATCGAT 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 446
BtsIMutI CAGTG 3 cut(s) 303, 624, 632
BveI ACCTGC 2 cut(s) 199, 552
Cac8I GCNNGC 2 cut(s) 632, 651
CaiI CAGNNNCTG 1 cut(s) 70
CfoI GCGC 3 cut(s) 36, 115, 512
Cfr10I RCCGGY 2 cut(s) 109, 127
Cfr13I GGNCC 1 cut(s) 184
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 1 cut(s) 183
CviAII CATG 4 cut(s) 387, 453, 522, 561
CviJI RGCY 9 cut(s) 67, 311, 397, 457, 554, 586, 634, 649, 653
CviKI_1 RGCY 9 cut(s) 67, 311, 397, 457, 554, 586, 634, 649, 653
DdeI CTNAG 2 cut(s) 162, 548
DinI GGCGCC 1 cut(s) 114
DpnI GATC 8 cut(s) 169, 320, 354, 467, 471, 505, 592, 605
DpnII GATC 8 cut(s) 167, 318, 352, 465, 469, 503, 590, 603
Eam1104I CTCTTC 2 cut(s) 22, 143
EarI CTCTTC 2 cut(s) 22, 143
Eco130I CCWWGG 3 cut(s) 198, 481, 659
Eco47I GGWCC 1 cut(s) 184
Eco47III AGCGCT 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 443
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoT14I CCWWGG 3 cut(s) 198, 481, 659
EcoT22I ATGCAT 1 cut(s) 562
EgeI GGCGCC 1 cut(s) 114
EheI GGCGCC 1 cut(s) 114
ErhI CCWWGG 3 cut(s) 198, 481, 659
FaeI CATG 4 cut(s) 390, 456, 525, 564
FalI AAGNNNNNCTT 1 cut(s) 675
FaqI GGGAC 2 cut(s) 86, 463
FatI CATG 4 cut(s) 386, 452, 521, 560
FauNDI CATATG 1 cut(s) 600
FbaI TGATCA 1 cut(s) 603
FokI GGATG 1 cut(s) 453
FspBI CTAG 1 cut(s) 31
GlaI GCGC 3 cut(s) 35, 114, 511
GsaI CCCAGC 1 cut(s) 590
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 3 cut(s) 37, 116, 513
HapII CCGG 2 cut(s) 110, 128
HgaI GACGC 1 cut(s) 183
HhaI GCGC 3 cut(s) 36, 115, 512
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 4 cut(s) 390, 456, 525, 564
Hin6I GCGC 3 cut(s) 34, 113, 510
HinP1I GCGC 3 cut(s) 34, 113, 510
HinfI GANTC 2 cut(s) 323, 406
HpaII CCGG 2 cut(s) 110, 128
HphI GGTGA 1 cut(s) 99
Hpy188I TCNGA 6 cut(s) 24, 165, 172, 357, 474, 551
Hpy188III TCNNGA 3 cut(s) 215, 403, 692
Hpy99I CGWCG 2 cut(s) 253, 283
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 3 cut(s) 72, 283, 619
HpyCH4V TGCA 5 cut(s) 286, 376, 560, 575, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 2 cut(s) 162, 548
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 4 cut(s) 390, 456, 525, 564
HspAI GCGC 3 cut(s) 34, 113, 510
KasI GGCGCC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 8 cut(s) 167, 318, 352, 465, 469, 503, 590, 603
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 402
MaeI CTAG 1 cut(s) 31
MalI GATC 8 cut(s) 169, 320, 354, 467, 471, 505, 592, 605
MboI GATC 8 cut(s) 167, 318, 352, 465, 469, 503, 590, 603
MboII GAAGA 3 cut(s) 9, 130, 401
MflI RGATCY 2 cut(s) 167, 352
MhlI GDGCHC 2 cut(s) 237, 624
MluCI AATT 5 cut(s) 273, 328, 367, 565, 638
Mly113I GGCGCC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 166, 211
Mph1103I ATGCAT 1 cut(s) 562
MspI CCGG 2 cut(s) 110, 128
MwoI GCNNNNNNNGC 1 cut(s) 241
NarI GGCGCC 1 cut(s) 113
NdeI CATATG 1 cut(s) 600
NdeII GATC 8 cut(s) 167, 318, 352, 465, 469, 503, 590, 603
NlaIII CATG 4 cut(s) 390, 456, 525, 564
NlaIV GGNNCC 3 cut(s) 114, 258, 398
NsiI ATGCAT 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 323, 406
PluTI GGCGCC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 586
PspN4I GGNNCC 3 cut(s) 114, 258, 398
PspPI GGNCC 1 cut(s) 184
PsrI GAACNNNNNNTAC 2 cut(s) 285, 317
PstNI CAGNNNCTG 1 cut(s) 70
PsuI RGATCY 2 cut(s) 167, 352
SapI GCTCTTC 1 cut(s) 22
Sau3AI GATC 8 cut(s) 167, 318, 352, 465, 469, 503, 590, 603
Sau96I GGNCC 1 cut(s) 184
SduI GDGCHC 2 cut(s) 237, 624
SetI ASST 4 cut(s) 69, 193, 546, 573
SfcI CTRYAG 1 cut(s) 615
SfoI GGCGCC 1 cut(s) 114
SgrAI CRCCGGYG 1 cut(s) 109
SinI GGWCC 1 cut(s) 184
Sse9I AATT 5 cut(s) 273, 328, 367, 565, 638
SsiI CCGC 2 cut(s) 270, 677
SspDI GGCGCC 1 cut(s) 112
SspMI CTAG 1 cut(s) 31
StyI CCWWGG 3 cut(s) 198, 481, 659
TaaI ACNGT 3 cut(s) 72, 283, 619
TaqI TCGA 6 cut(s) 216, 231, 321, 416, 468, 593
TasI AATT 5 cut(s) 273, 328, 367, 565, 638
TfiI GAWTC 2 cut(s) 323, 406
TscAI CASTG 3 cut(s) 303, 624, 632
TspDTI ATGAA 3 cut(s) 374, 457, 577
TspGWI ACGGA 2 cut(s) 88, 266
TspRI CASTG 3 cut(s) 303, 624, 632
VpaK11BI GGWCC 1 cut(s) 184
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XspI CTAG 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.