Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Forward (+)

23914931 .. 23918493

Gene Structure 3563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG239700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCCAACGACGGAGGAACCAAACACAACCGCTATTACGACGGTGCAACCAGCATCAGAGTCTTTGAAAGATTTTGTTCAAGATCTAAGAATTCACTTGTTTGTGATGACTCAAGCAATAGTAATTGAGCATCGTTCTAACTCACAGCACAACATGGACTATATAGACTCTGGATCAGTGTACATTCTTGCAGATTCAGGTGGGGAAGTTGGAGTTCCCTATGAGACTTACTTTCCAATGCCAACCCCAGCAAAGGATAAACCATGGTATTCCACAGAACAAGGAAGCGTCCACATCACGATGATTTCAACAGAGCATGACTGGACCAAAAATTCTGAGCAGGTAAAGATGATTAAGCACTGGCATAGACCAATGTATACATCTGCCCCTGGATTCCTGAGTGTTGATGAGAAATTCGTTGACAAAGTTGAACCATTACTTCTGGCAAGCAAAGTTGATCTGGCGCTGTTTGGTCATGTCCATAACTACGAGCGAACCTGCTCCATTTATAAGAGCCAATGCATGAAATTGCCTTGCAAAGATGAGGCTGGGATCGACACATATGATCACAGCAACTACAGTGCCCCAGTGCCAGCCATAATTGGAATGGCTGGCTTTTCCTTGGACAAACACAAGAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

214

Amino Acids

24.11

Weight (kDa)

5.72

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
Acc36I	ACCTGC	2 cut(s)	331, 506
AccI	GTMKAC	1 cut(s)	377
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	2 cut(s)	181, 560
AcsI	RAATTY	3 cut(s)	90, 331, 413
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	4 cut(s)	67, 80, 309, 431
AjnI	CCWGG	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	181, 560
ApoI	RAATTY	3 cut(s)	90, 331, 413
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	324
BaeGI	GKGCMC	1 cut(s)	586
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	577
BfoI	RGCGCY	1 cut(s)	467
BfuAI	ACCTGC	2 cut(s)	331, 506
BglII	AGATCT	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	2 cut(s)	62, 139
BmuI	ACTGGG	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	263, 388, 621
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	3 cut(s)	326, 365, 587
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	263, 388, 621
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	327, 389
BseNI	ACTGG	3 cut(s)	326, 365, 587
BseSI	GKGCMC	1 cut(s)	586
BseYI	CCCAGC	2 cut(s)	247, 548
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	5 cut(s)	82, 173, 457, 552, 565
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	2 cut(s)	328, 390
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	2 cut(s)	331, 506
BspPI	GGATC	2 cut(s)	181, 560
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	3 cut(s)	326, 365, 587
BssECI	CCNNGG	3 cut(s)	263, 388, 621
BssMI	GATC	5 cut(s)	82, 173, 457, 552, 565
BssNAI	GTATAC	1 cut(s)	378
BssT1I	CCWWGG	2 cut(s)	263, 621
Bst1107I	GTATAC	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	43, 581
BstAUI	TGTACA	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	448, 594, 613
BstDEI	CTNAG	3 cut(s)	86, 336, 398
BstDSI	CCRYGG	1 cut(s)	263
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	5 cut(s)	85, 176, 460, 555, 568
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	5 cut(s)	82, 173, 457, 552, 565
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	577
BstSLI	GKGCMC	1 cut(s)	586
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BstZ17I	GTATAC	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	263
BtsIMutI	CAGTG	4 cut(s)	183, 358, 586, 594
BveI	ACCTGC	2 cut(s)	331, 506
Cac8I	GCNNGC	3 cut(s)	448, 594, 613
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	324
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	5 cut(s)	154, 264, 317, 476, 523
CviJI	RGCY	5 cut(s)	516, 548, 596, 611, 615
CviKI_1	RGCY	5 cut(s)	516, 548, 596, 611, 615
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	3 cut(s)	86, 336, 398
DpnI	GATC	5 cut(s)	84, 175, 459, 554, 567
DpnII	GATC	5 cut(s)	82, 173, 457, 552, 565
Eco130I	CCWWGG	2 cut(s)	263, 621
Eco47I	GGWCC	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	263, 621
EcoT22I	ATGCAT	1 cut(s)	524
ErhI	CCWWGG	2 cut(s)	263, 621
FaeI	CATG	5 cut(s)	157, 267, 320, 479, 526
FatI	CATG	5 cut(s)	153, 263, 316, 475, 522
FauNDI	CATATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	377
GlaI	GCGC	1 cut(s)	465
GsaI	CCCAGC	2 cut(s)	251, 552
HaeII	RGCGCY	1 cut(s)	467
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	5 cut(s)	157, 267, 320, 479, 526
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	5 cut(s)	59, 109, 167, 194, 393
Hpy166II	GTNNAC	4 cut(s)	181, 292, 378, 421
Hpy188I	TCNGA	2 cut(s)	58, 337
Hpy188III	TCNNGA	4 cut(s)	80, 171, 298, 397
Hpy8I	GTNNAC	4 cut(s)	181, 292, 378, 421
Hpy99I	CGWCG	2 cut(s)	13, 43
HpyCH4III	ACNGT	2 cut(s)	43, 581
HpyCH4V	TGCA	4 cut(s)	46, 191, 522, 537
HpyF3I	CTNAG	3 cut(s)	86, 336, 398
Hsp92II	CATG	5 cut(s)	157, 267, 320, 479, 526
HspAI	GCGC	1 cut(s)	464
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	82, 173, 457, 552, 565
LmnI	GCTCC	1 cut(s)	506
LweI	GCATC	2 cut(s)	62, 139
MalI	GATC	5 cut(s)	84, 175, 459, 554, 567
MboI	GATC	5 cut(s)	82, 173, 457, 552, 565
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	6 cut(s)	90, 123, 331, 413, 527, 600
MlyI	GAGTC	3 cut(s)	68, 103, 161
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	2 cut(s)	7, 538
Mph1103I	ATGCAT	1 cut(s)	524
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	263
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	5 cut(s)	82, 173, 457, 552, 565
NlaIII	CATG	5 cut(s)	157, 267, 320, 479, 526
NlaIV	GGNNCC	1 cut(s)	18
NsiI	ATGCAT	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	194, 393
PleI	GAGTC	3 cut(s)	67, 103, 161
PpsI	GAGTC	3 cut(s)	67, 103, 161
PsiI	TTATAA	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	2 cut(s)	247, 548
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	5 cut(s)	82, 173, 457, 552, 565
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	3 cut(s)	68, 103, 161
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	586
SetI	ASST	3 cut(s)	202, 345, 500
SfaNI	GCATC	2 cut(s)	62, 139
SfcI	CTRYAG	1 cut(s)	577
SinI	GGWCC	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	6 cut(s)	90, 123, 331, 413, 527, 600
SsiI	CCGC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	263, 621
TaaI	ACNGT	2 cut(s)	43, 581
TaqI	TCGA	1 cut(s)	555
TasI	AATT	6 cut(s)	90, 123, 331, 413, 527, 600
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	194, 393
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	4 cut(s)	183, 365, 586, 594
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	4 cut(s)	183, 365, 586, 594
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	3 cut(s)	90, 331, 413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.