Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007075.1

Orthogroup ID

OG0002404

Physical Location & Seq

Genomic Coordinates Reverse (-)

66733 .. 71376

Gene Structure 4644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007075.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atggaggccacgatgcccatttgcaagactgttactccaactccatgcaaggaacagatcgactggaagcgccgttatggcaagtacaagccccgaaagaaaccgaggtcggcggaggttgaagccgagcaaaaggagctccaagaggctatcaaaaatgtaagagaaaggatagaagactctgctacgagctttggttggagtgatcgaatccaattccacactccccctgtgggaggatctgatgagctcaaatttcttgcatttggcgacatgggaaaggctcctcgtgattcttctgtcgagcattatattcaggtatatgaattggactatatagaatctggatcagtgtacattcttgcagattcaggtggggaagttggagttccctatgagacttactttccaatgccaaccccagcaaaggataaaccatggtattccatagaacaaggaagcgtccacatcacgatgatttcaacagagcatgactggaccaaaaattttgagcagtatcaatggatgaaaaaggatatggcttcagttgatcgatctaaaactccttggttgatatttatggggcatagaccaatgtatacatctgcccctggattcctgagtgttgatgagaaattcgttgacaaagttgaaccattacttctggcaagcaaagttgatctggcgctgtttggtcatgtccataactacgagcgaacctgctccatttataagatccaatgcatgaaattgccttgcaaagttaaggctgggatcgacacatatgatcacagcaactacagtgccccagtgcaagccataattggaatggctggcttttccttggacaagtttccaagtggtgtaagtccttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

292

Amino Acids

33.21

Weight (kDa)

6.26

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02230
malus_domestica	MD07G1028100.v1.1 MD07G1028200.v1.1 MD07G1028400.v1.1 MD07G1028500.v1.1 MD07G1029100.v1.1 MD07G1029700.v1.1
prunus_persica	Prupe.2G028600_v2.0.a1
pyrus_communis	pycom07g02130 pycom07g02160 pycom07g02180
rosa_chinensis	RchiOBHm_Chr1g0319551 RchiOBHm_Chr4g0411971 RchiOBHm_Chr4g0411981 RchiOBHm_Chr4g0424731 RchiOBHm_Chr6g0289041
rosa_laevigata	RLG00000008606 RLG00000030473
rosa_multiflora	Rmu_sc0001522.1_g000015 Rmu_sc0002539.1_g000057 Rmu_sc0003541.1_g000056 Rmu_sc0003855.1_g000001 Rmu_sc0004345.1_g000025 Rmu_sc0007075.1_g000015 Rmu_ssc0000361.1_g000013
rosa_roxburghii	Rroxscaffold_1G00030780 Rroxscaffold_4G00328290
rosa_rugosa	Rorug01G0028200 Rorug07G0178400
rosa_samantha	Rh1AG040300 Rh1AG169900 Rh1BG037400 Rh1BG283500 Rh1CG041300 Rh1CG157600 Rh2BG239700 Rh4AG170500 Rh4AG170800 Rh4CG304500 Rh7AG159500 Rh7BG311500
rosa_wichuraiana	Rw1G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
Acc36I	ACCTGC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	599
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	4 cut(s)	247, 355, 730, 782
AcsI	RAATTY	3 cut(s)	254, 505, 635
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	2 cut(s)	86, 356
AfiI	CCNNNNNNNGG	3 cut(s)	233, 236, 427
AgsI	TTSAA	3 cut(s)	122, 483, 653
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	3 cut(s)	139, 192, 250
AluI	AGCT	3 cut(s)	139, 192, 250
Alw21I	GWGCWC	2 cut(s)	141, 252
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	4 cut(s)	247, 355, 730, 782
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	3 cut(s)	254, 505, 635
AspLEI	GCGC	2 cut(s)	72, 688
AspS9I	GGNCC	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	808
BanII	GRGCYC	2 cut(s)	141, 252
BauI	CACGAG	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	2 cut(s)	141, 252
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	612
BclI	TGATCA	1 cut(s)	787
BcoDI	GTCTC	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	799
BfoI	RGCGCY	2 cut(s)	73, 689
BfuAI	ACCTGC	1 cut(s)	728
BglI	GCCNNNNNGGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	612
BmrI	ACTGGG	1 cut(s)	803
BmsI	GCATC	1 cut(s)	3
BmuI	ACTGGG	1 cut(s)	803
BpiI	GAAGAC	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	553
BsaJI	CCNNGG	5 cut(s)	104, 437, 566, 610, 843
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 25, 49, 55
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 236, 427
Bse1I	ACTGG	3 cut(s)	68, 500, 809
BseBI	CCWGG	1 cut(s)	612
BseCI	ATCGAT	1 cut(s)	553
BseDI	CCNNGG	5 cut(s)	104, 437, 566, 610, 843
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	3 cut(s)	233, 236, 427
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	3 cut(s)	68, 500, 809
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	808
BseYI	CCCAGC	2 cut(s)	421, 770
BshFI	GGCC	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	553
BsiHKAI	GWGCWC	2 cut(s)	141, 252
BslI	CCNNNNNNNGG	3 cut(s)	233, 236, 427
BsmAI	GTCTC	1 cut(s)	392
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	3 cut(s)	141, 252, 808
Bsp1407I	TGTACA	1 cut(s)	354
Bsp19I	CCATGG	1 cut(s)	437
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	612
BspDI	ATCGAT	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	285
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	4 cut(s)	247, 355, 730, 782
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	3 cut(s)	68, 500, 809
BssECI	CCNNGG	5 cut(s)	104, 437, 566, 610, 843
BssNAI	GTATAC	1 cut(s)	600
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	3 cut(s)	437, 566, 843
Bst1107I	GTATAC	1 cut(s)	600
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	31, 803
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	670, 816, 835
BstDEI	CTNAG	1 cut(s)	620
BstDSI	CCRYGG	1 cut(s)	437
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	531
BstH2I	RGCGCY	2 cut(s)	73, 689
BstHHI	GCGC	2 cut(s)	72, 688
BstMAI	GTCTC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 136
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	1 cut(s)	799
BstSLI	GKGCMC	1 cut(s)	808
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	239, 735
BstYI	RGATCY	2 cut(s)	239, 735
BstZ17I	GTATAC	1 cut(s)	600
Bsu15I	ATCGAT	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	553
BtgI	CCRYGG	1 cut(s)	437
BtsCI	GGATG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	357, 808, 816
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	3 cut(s)	670, 816, 835
CfoI	GCGC	2 cut(s)	72, 688
Cfr13I	GGNCC	1 cut(s)	498
ClaI	ATCGAT	1 cut(s)	553
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	85, 355
CviAII	CATG	6 cut(s)	45, 274, 438, 491, 698, 745
CviQI	GTAC	2 cut(s)	85, 355
DdeI	CTNAG	1 cut(s)	620
EciI	GGCGGA	1 cut(s)	128
Ecl136II	GAGCTC	2 cut(s)	139, 250
Eco130I	CCWWGG	3 cut(s)	437, 566, 843
Eco24I	GRGCYC	2 cut(s)	141, 252
Eco47I	GGWCC	1 cut(s)	498
Eco53kI	GAGCTC	2 cut(s)	139, 250
Eco57I	CTGAAG	1 cut(s)	528
EcoICRI	GAGCTC	2 cut(s)	139, 250
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	3 cut(s)	437, 566, 843
EcoT22I	ATGCAT	1 cut(s)	746
EcoT38I	GRGCYC	2 cut(s)	141, 252
ErhI	CCWWGG	3 cut(s)	437, 566, 843
FaeI	CATG	6 cut(s)	48, 277, 441, 494, 701, 748
FalI	AAGNNNNNCTT	1 cut(s)	859
FatI	CATG	6 cut(s)	44, 273, 437, 490, 697, 744
FauNDI	CATATG	1 cut(s)	784
FbaI	TGATCA	1 cut(s)	787
FblI	GTMKAC	1 cut(s)	599
FokI	GGATG	1 cut(s)	538
FriOI	GRGCYC	2 cut(s)	141, 252
GlaI	GCGC	2 cut(s)	71, 687
GsaI	CCCAGC	2 cut(s)	425, 774
HaeII	RGCGCY	2 cut(s)	73, 689
HaeIII	GGCC	1 cut(s)	8
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	2 cut(s)	72, 688
Hin1II	CATG	6 cut(s)	48, 277, 441, 494, 701, 748
Hin6I	GCGC	2 cut(s)	70, 686
HinP1I	GCGC	2 cut(s)	70, 686
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	6 cut(s)	179, 210, 293, 341, 368, 615
Hpy166II	GTNNAC	4 cut(s)	355, 466, 600, 643
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	5 cut(s)	290, 345, 472, 619, 876
Hpy8I	GTNNAC	4 cut(s)	355, 466, 600, 643
HpyCH4III	ACNGT	2 cut(s)	31, 803
HpyCH4V	TGCA	7 cut(s)	24, 48, 263, 365, 744, 759, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 136
HpyF3I	CTNAG	1 cut(s)	620
Hsp92II	CATG	6 cut(s)	48, 277, 441, 494, 701, 748
HspAI	GCGC	2 cut(s)	70, 686
Ksp22I	TGATCA	1 cut(s)	787
LmnI	GCTCC	4 cut(s)	136, 144, 289, 728
LweI	GCATC	1 cut(s)	3
MaeIII	GTNAC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	188, 288
MflI	RGATCY	2 cut(s)	239, 735
MhlI	GDGCHC	3 cut(s)	141, 252, 808
MluCI	AATT	7 cut(s)	215, 254, 326, 505, 635, 749, 822
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	3 cut(s)	62, 179, 364
MnlI	CCTC	5 cut(s)	99, 109, 139, 230, 297
Mph1103I	ATGCAT	1 cut(s)	746
MseI	TTAA	1 cut(s)	765
MslI	CAYNNNNRTG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	612
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	2 cut(s)	78, 136
NcoI	CCATGG	1 cut(s)	437
NdeI	CATATG	1 cut(s)	784
NlaIII	CATG	6 cut(s)	48, 277, 441, 494, 701, 748
NlaIV	GGNNCC	1 cut(s)	285
NmeAIII	GCCGAG	1 cut(s)	151
NsiI	ATGCAT	1 cut(s)	746
PfeI	GAWTC	5 cut(s)	210, 293, 341, 368, 615
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PsiI	TTATAA	1 cut(s)	732
Psp124BI	GAGCTC	2 cut(s)	141, 252
Psp6I	CCWGG	1 cut(s)	610
PspFI	CCCAGC	2 cut(s)	421, 770
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	498
PsuI	RGATCY	2 cut(s)	239, 735
RsaI	GTAC	2 cut(s)	86, 356
RsaNI	GTAC	2 cut(s)	85, 355
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	2 cut(s)	141, 252
SaqAI	TTAA	1 cut(s)	765
Sau96I	GGNCC	1 cut(s)	498
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	3 cut(s)	141, 252, 808
SetI	ASST	8 cut(s)	110, 120, 141, 194, 252, 321, 376, 722
SfaNI	GCATC	1 cut(s)	3
SfcI	CTRYAG	1 cut(s)	799
SinI	GGWCC	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	7 cut(s)	215, 254, 326, 505, 635, 749, 822
SsiI	CCGC	1 cut(s)	113
SstI	GAGCTC	2 cut(s)	141, 252
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	3 cut(s)	437, 566, 843
TaaI	ACNGT	2 cut(s)	31, 803
TaqI	TCGA	5 cut(s)	60, 208, 303, 553, 777
TasI	AATT	7 cut(s)	215, 254, 326, 505, 635, 749, 822
TatI	WGTACW	2 cut(s)	84, 354
TfiI	GAWTC	5 cut(s)	210, 293, 341, 368, 615
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TscAI	CASTG	3 cut(s)	357, 808, 816
TspDTI	ATGAA	3 cut(s)	339, 542, 761
TspRI	CASTG	3 cut(s)	357, 808, 816
VpaK11BI	GGWCC	1 cut(s)	498
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	3 cut(s)	254, 505, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmiI	GTMKAC	1 cut(s)	599
Zsp2I	ATGCAT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.