Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

8055609 .. 8057445

Gene Structure 1837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1110900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGTTTTTTTATTCCACTCCTTCTAGTCGAATCCTCAATAAGTCTTCGACTGATCAAAGCACAGTGGACATGGATATTCCATTCAGATTGGCTGGATTAGTATTTGCACTCATCCAGCTAATAGGTTCCGTCATCCTTATGTCTGTAGTTGCCTGGCAAGTCATCCTCCTTTTCCTTGTCATCTTTGCACTCTCCGCGTGGTACATGGTGTATTGCATTAGCACTGCCAGAGAATTATCCAGGATGGTTGCAATTCAAAAGGCTCCAATACTGCATCAATTTTCTGAATCAATCACGGGGGCTGCAACTATTCGTTGTTTCAATCAAGAACAAGATCGCTTCATGAAGAAAGTAAGAAGCGTGATTGATGATTTTTCAGGAGTAGCCTTTCACAATTATGCAACCACGAAATGGCTTTCTGTGCGAATGAACTTTCTCTTCAACTTAGCCTTCTTCATAGTCCTCATCATCTTGGGGACCTTGCCTGCATCCGCCATTTATCCCAGTTTGGCAAGATTGGCTGCATCTTATTGCTTTAACCTCATGGTCCTTCAGGCTTGGTTATCTGGAATCTATGCAATGTTGAAAACTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

200

Amino Acids

22.43

Weight (kDa)

9.44

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	1 - 162	4.7e-19	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	414
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	198, 495
AcuI	CTGAAG	1 cut(s)	539
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	414
AgsI	TTSAA	4 cut(s)	260, 325, 445, 589
AjnI	CCWGG	2 cut(s)	155, 242
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	305, 524
AspS9I	GGNCC	2 cut(s)	480, 550
AvaII	GGWCC	2 cut(s)	480, 550
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	292, 511
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	157, 244
BclI	TGATCA	1 cut(s)	55
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	2 cut(s)	306, 525
BlsI	GCNGC	2 cut(s)	307, 526
Bme1390I	CCNGG	2 cut(s)	157, 244
Bme18I	GGWCC	2 cut(s)	480, 550
BmgT120I	GGNCC	2 cut(s)	480, 550
BmiI	GGNNCC	3 cut(s)	130, 267, 481
BmrFI	CCNGG	2 cut(s)	157, 244
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	3 cut(s)	286, 500, 536
BmuI	ACTGGG	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	157, 244
BseGI	GGATG	5 cut(s)	114, 135, 165, 252, 491
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	588
BseNI	ACTGG	1 cut(s)	507
BseXI	GCAGC	2 cut(s)	292, 511
Bsh1236I	CGCG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	55, 337
BspACI	CCGC	2 cut(s)	198, 495
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	130, 267, 481
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	507
BssMI	GATC	2 cut(s)	55, 337
Bst2UI	CCWGG	2 cut(s)	157, 244
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	1 cut(s)	448
BstF5I	GGATG	5 cut(s)	114, 135, 165, 252, 491
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	2 cut(s)	58, 340
BstMBI	GATC	2 cut(s)	55, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 424, 521
BstNI	CCWGG	2 cut(s)	157, 244
BstSCI	CCNGG	2 cut(s)	155, 242
BstSFI	CTRYAG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	292, 511
BstV2I	GAAGAC	1 cut(s)	39
BtsCI	GGATG	5 cut(s)	114, 135, 165, 252, 491
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	72, 225
Cac8I	GCNNGC	1 cut(s)	489
CciI	TCATGA	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	480, 550
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	4 cut(s)	73, 208, 346, 547
CviJI	RGCY	9 cut(s)	95, 121, 266, 305, 389, 418, 452, 524, 560
CviKI_1	RGCY	9 cut(s)	95, 121, 266, 305, 389, 418, 452, 524, 560
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	2 cut(s)	57, 339
DpnII	GATC	2 cut(s)	55, 337
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
EciI	GGCGGA	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	480, 550
Eco57I	CTGAAG	1 cut(s)	539
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	155, 242
FaeI	CATG	4 cut(s)	76, 211, 349, 550
FaiI	YATR	8 cut(s)	74, 143, 209, 347, 402, 461, 548, 579
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	4 cut(s)	72, 207, 345, 546
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	306, 525
FokI	GGATG	5 cut(s)	101, 122, 152, 259, 478
Fsp4HI	GCNGC	2 cut(s)	306, 525
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	2 cut(s)	306, 525
Hin1II	CATG	4 cut(s)	76, 211, 349, 550
HinfI	GANTC	3 cut(s)	33, 290, 573
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	89, 289
Hpy188III	TCNNGA	4 cut(s)	329, 346, 381, 570
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	3 cut(s)	33, 463, 563
HpyCH4III	ACNGT	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 424, 521
HpyF3I	CTNAG	1 cut(s)	448
Hsp92II	CATG	4 cut(s)	76, 211, 349, 550
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	55, 337
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	292, 511
LweI	GCATC	3 cut(s)	286, 500, 536
MaeI	CTAG	1 cut(s)	27
MalI	GATC	2 cut(s)	57, 339
MboI	GATC	2 cut(s)	55, 337
MboII	GAAGA	4 cut(s)	39, 361, 433, 448
MluCI	AATT	4 cut(s)	236, 255, 281, 397
MnlI	CCTC	4 cut(s)	47, 179, 476, 554
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	140, 399
MspR9I	CCNGG	2 cut(s)	157, 244
MvaI	CCWGG	2 cut(s)	157, 244
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	197, 424, 521
NdeII	GATC	2 cut(s)	55, 337
NlaIII	CATG	4 cut(s)	76, 211, 349, 550
NlaIV	GGNNCC	3 cut(s)	130, 267, 481
PagI	TCATGA	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	33, 290, 573
PflMI	CCANNNNNTGG	1 cut(s)	414
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	307, 526
PpuMI	RGGWCCY	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	155, 242
PspGI	CCWGG	2 cut(s)	155, 242
PspN4I	GGNNCC	3 cut(s)	130, 267, 481
PspPI	GGNCC	2 cut(s)	480, 550
PspPPI	RGGWCCY	1 cut(s)	480
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	2 cut(s)	140, 399
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	2 cut(s)	306, 525
Sau3AI	GATC	2 cut(s)	55, 337
Sau96I	GGNCC	2 cut(s)	480, 550
ScrFI	CCNGG	2 cut(s)	157, 244
SetI	ASST	4 cut(s)	123, 130, 485, 546
SfaNI	GCATC	3 cut(s)	286, 500, 536
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	2 cut(s)	480, 550
SmiMI	CAYNNNNRTG	2 cut(s)	140, 399
Sse9I	AATT	4 cut(s)	236, 255, 281, 397
SsiI	CCGC	2 cut(s)	198, 495
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	155, 242
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	31, 50
TasI	AATT	4 cut(s)	236, 255, 281, 397
TfiI	GAWTC	3 cut(s)	33, 290, 573
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	2 cut(s)	72, 232
TseI	GCWGC	2 cut(s)	305, 524
TspDTI	ATGAA	4 cut(s)	334, 362, 446, 448
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	2 cut(s)	72, 232
Van91I	CCANNNNNTGG	1 cut(s)	414
VpaK11BI	GGWCC	2 cut(s)	480, 550
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.