Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005258.1

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

17945 .. 19084

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005258.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgtcttttggtgctcggcaaattggtctacaagtcagagcagctttgaccgccttaatctacaagaagtgcatctcgattaagtactctggtccaagcaatggtgaaatcataaacttaatcaacatagacgtagaagtggttggagaattcttctcttctattcatggagcttgggtgcttccccttcaagtgttgctggcattggttatcttgtacagaaatctaggtgctgccccttctctagctgcctttctggccacagtagcagtagtggtatgcaacacaccattggctcgaaggcaacaaattctccaatcaaaaatcaacaatggtgaaatcataaacttaatcaacatggacgtagaagtggttggagaattcttctcttctattcatggagcttgggtgcttccccttcaagtgttgctggcattggttatcttatacagaaatctcggtgctgccccttctctggctgcctttttggccacagtagcagtagtggtatgcaacacaccattggctcgaaggcaacaaattctccaatcaaaaatcatggaagcaaaggattcaagaatcaagagaacctcagagactctaaagagcatgagagtcataaaattcaattcatgggatcctagtttcttagagaagctacttcaacttagagaaactgagaaaagttggttaaggagatttttatacactaaggcggcagtggtatttctcttctggacttcaccaaccatagtttcagtggttacttttggtgtttgcatcatgatgaaaacaccattagaaccatatacagtcctgtcagctttagccactttcaaaatccttaccgagccaatttacaaccttccagagtttatctcaacaattatccaaacaaaggtttcggttaagcgaattcaagaattcatcagattagataaacaagtggagctgattccttgtgattattcttgcactacttcagaaatcagggttgaaatggagtctggagagttttcttggaaggcaagcaatgaacatgtagagagacctacaatcacagttagagaaaaaataactatgagaaagggatgcaaggtgggagtttgcggttctgttggctcaggcaagtctagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

379

Amino Acids

42.18

Weight (kDa)

9.41

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	3 cut(s)	51, 716, 1110
AclWI	GGATC	2 cut(s)	632, 645
AcoI	YGGCCR	2 cut(s)	258, 489
AcsI	RAATTY	7 cut(s)	149, 309, 380, 540, 623, 915, 923
AcuI	CTGAAG	1 cut(s)	966
AfaI	GTAC	2 cut(s)	86, 218
AfiI	CCNNNNNNNGG	3 cut(s)	101, 475, 898
AflIII	ACRYGT	1 cut(s)	1039
AgsI	TTSAA	8 cut(s)	191, 422, 576, 628, 665, 838, 920, 998
AjuI	GAANNNNNNNTTGG	2 cut(s)	739, 771
AluBI	AGCT	8 cut(s)	44, 173, 248, 404, 658, 824, 952, 1137
AluI	AGCT	8 cut(s)	44, 173, 248, 404, 658, 824, 952, 1137
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	590, 1042
AlwI	GGATC	2 cut(s)	632, 645
AoxI	GGCC	2 cut(s)	258, 489
ApeKI	GCWGC	5 cut(s)	41, 233, 248, 464, 479
ApoI	RAATTY	7 cut(s)	149, 309, 380, 540, 623, 915, 923
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	3 cut(s)	116, 347, 735
AvaII	GGWCC	1 cut(s)	92
BalI	TGGCCA	2 cut(s)	260, 491
BamHI	GGATCC	1 cut(s)	637
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	5 cut(s)	53, 220, 235, 451, 466
BcoDI	GTCTC	2 cut(s)	590, 1042
BfaI	CTAG	5 cut(s)	227, 245, 642, 1134, 1138
BglI	GCCNNNNNGGC	2 cut(s)	257, 488
BisI	GCNGC	6 cut(s)	42, 234, 249, 465, 480, 717
BlsI	GCNGC	6 cut(s)	43, 235, 250, 466, 481, 718
BmcAI	AGTACT	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	639
BmsI	GCATC	3 cut(s)	81, 789, 1082
BplI	GAGNNNNNCTC	2 cut(s)	863, 895
BpmI	CTGGAG	1 cut(s)	1029
Bpu10I	CCTNAGC	1 cut(s)	1123
BsaI	GGTCTC	1 cut(s)	1042
BsaXI	ACNNNNNCTCC	8 cut(s)	162, 192, 297, 327, 393, 423, 528, 558
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 475, 898
Bse3DI	GCAATG	2 cut(s)	106, 1039
BseGI	GGATG	1 cut(s)	1097
BseLI	CCNNNNNNNGG	3 cut(s)	101, 475, 898
BseMI	GCAATG	2 cut(s)	106, 1039
BseMII	CTCAG	3 cut(s)	606, 669, 1137
BseXI	GCAGC	5 cut(s)	53, 220, 235, 451, 466
BshFI	GGCC	2 cut(s)	260, 491
BsiHKAI	GWGCWC	1 cut(s)	16
BslI	CCNNNNNNNGG	3 cut(s)	101, 475, 898
BsmAI	GTCTC	2 cut(s)	590, 1042
BsnI	GGCC	2 cut(s)	260, 491
Bso31I	GGTCTC	1 cut(s)	1042
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	637
BspACI	CCGC	3 cut(s)	51, 716, 1110
BspANI	GGCC	2 cut(s)	260, 491
BspCNI	CTCAG	3 cut(s)	605, 670, 1136
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	1 cut(s)	639
BspPI	GGATC	2 cut(s)	632, 645
BspTNI	GGTCTC	1 cut(s)	1042
BsrDI	GCAATG	2 cut(s)	106, 1039
BsrGI	TGTACA	1 cut(s)	216
BssMI	GATC	1 cut(s)	637
Bst4CI	ACNGT	4 cut(s)	265, 496, 814, 1063
Bst6I	CTCTTC	3 cut(s)	163, 394, 737
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	201, 432, 1030
BstDEI	CTNAG	6 cut(s)	592, 649, 668, 678, 711, 1123
BstF5I	GGATG	1 cut(s)	1097
BstKTI	GATC	1 cut(s)	640
BstMAI	GTCTC	2 cut(s)	590, 1042
BstMBI	GATC	1 cut(s)	637
BstMWI	GCNNNNNNNGC	6 cut(s)	50, 257, 266, 488, 497, 1134
BstNSI	RCATGY	1 cut(s)	1043
BstV1I	GCAGC	5 cut(s)	53, 220, 235, 451, 466
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	260, 491
BtsCI	GGATG	1 cut(s)	1097
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	2 cut(s)	726, 765
Cac8I	GCNNGC	3 cut(s)	201, 432, 1030
CciI	TCATGA	1 cut(s)	783
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	85, 217
CviAII	CATG	8 cut(s)	167, 358, 398, 559, 610, 633, 784, 1040
CviQI	GTAC	2 cut(s)	85, 217
DdeI	CTNAG	6 cut(s)	592, 649, 668, 678, 711, 1123
DpnI	GATC	1 cut(s)	639
DpnII	GATC	1 cut(s)	637
EaeI	YGGCCR	2 cut(s)	258, 489
Eam1104I	CTCTTC	3 cut(s)	163, 394, 737
EarI	CTCTTC	3 cut(s)	163, 394, 737
Eco31I	GGTCTC	1 cut(s)	1042
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	966
EcoRI	GAATTC	4 cut(s)	149, 380, 915, 923
FaeI	CATG	8 cut(s)	170, 361, 401, 562, 613, 636, 787, 1043
FatI	CATG	8 cut(s)	166, 357, 397, 558, 609, 632, 783, 1039
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	6 cut(s)	42, 234, 249, 465, 480, 717
FokI	GGATG	1 cut(s)	1104
Fsp4HI	GCNGC	6 cut(s)	42, 234, 249, 465, 480, 717
FspBI	CTAG	5 cut(s)	227, 245, 642, 1134, 1138
GluI	GCNGC	6 cut(s)	42, 234, 249, 465, 480, 717
GsuI	CTGGAG	1 cut(s)	1029
HaeIII	GGCC	2 cut(s)	260, 491
Hin1II	CATG	8 cut(s)	170, 361, 401, 562, 613, 636, 787, 1043
HinfI	GANTC	6 cut(s)	572, 579, 598, 615, 955, 1004
HphI	GGTGA	3 cut(s)	116, 347, 735
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	4 cut(s)	38, 595, 932, 985
Hpy188III	TCNNGA	8 cut(s)	76, 576, 583, 736, 784, 869, 920, 1008
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	8 cut(s)	197, 249, 294, 428, 480, 525, 875, 1018
HpyCH4III	ACNGT	4 cut(s)	265, 496, 814, 1063
HpyCH4IV	ACGT	2 cut(s)	132, 363
HpyCH4V	TGCA	6 cut(s)	72, 282, 513, 780, 975, 1095
HpyF10VI	GCNNNNNNNGC	6 cut(s)	50, 257, 266, 488, 497, 1134
HpyF3I	CTNAG	6 cut(s)	592, 649, 668, 678, 711, 1123
HpySE526I	ACGT	2 cut(s)	132, 363
Hsp92II	CATG	8 cut(s)	170, 361, 401, 562, 613, 636, 787, 1043
Kzo9I	GATC	1 cut(s)	637
LmnI	GCTCC	3 cut(s)	170, 401, 949
Lsp1109I	GCAGC	5 cut(s)	53, 220, 235, 451, 466
LweI	GCATC	3 cut(s)	81, 789, 1082
MaeI	CTAG	5 cut(s)	227, 245, 642, 1134, 1138
MaeII	ACGT	2 cut(s)	132, 363
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	1 cut(s)	639
MboI	GATC	1 cut(s)	637
MboII	GAAGA	5 cut(s)	145, 150, 376, 381, 724
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	16
MlsI	TGGCCA	2 cut(s)	260, 491
MluNI	TGGCCA	2 cut(s)	260, 491
MlyI	GAGTC	3 cut(s)	592, 624, 1013
MmeI	TCCRAC	2 cut(s)	124, 355
MnlI	CCTC	1 cut(s)	601
Mox20I	TGGCCA	2 cut(s)	260, 491
MscI	TGGCCA	2 cut(s)	260, 491
MseI	TTAA	6 cut(s)	56, 81, 119, 350, 692, 909
MslI	CAYNNNNRTG	1 cut(s)	785
Msp20I	TGGCCA	2 cut(s)	260, 491
MwoI	GCNNNNNNNGC	6 cut(s)	50, 257, 266, 488, 497, 1134
NdeII	GATC	1 cut(s)	637
NlaIII	CATG	8 cut(s)	170, 361, 401, 562, 613, 636, 787, 1043
NlaIV	GGNNCC	1 cut(s)	639
NspI	RCATGY	1 cut(s)	1043
PagI	TCATGA	1 cut(s)	783
PciI	ACATGT	1 cut(s)	1039
PfeI	GAWTC	3 cut(s)	572, 579, 955
PflMI	CCANNNNNTGG	1 cut(s)	101
PkrI	GCNGC	6 cut(s)	43, 235, 250, 466, 481, 718
PleI	GAGTC	3 cut(s)	592, 623, 1012
PpsI	GAGTC	3 cut(s)	592, 623, 1012
PscI	ACATGT	1 cut(s)	1039
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	2 cut(s)	86, 218
RsaNI	GTAC	2 cut(s)	85, 217
RseI	CAYNNNNRTG	1 cut(s)	785
SaqAI	TTAA	6 cut(s)	56, 81, 119, 350, 692, 909
SatI	GCNGC	6 cut(s)	42, 234, 249, 465, 480, 717
Sau3AI	GATC	1 cut(s)	637
Sau96I	GGNCC	1 cut(s)	92
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	3 cut(s)	592, 624, 1013
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	3 cut(s)	81, 789, 1082
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	785
SsiI	CCGC	3 cut(s)	51, 716, 1110
SspMI	CTAG	5 cut(s)	227, 245, 642, 1134, 1138
TaaI	ACNGT	4 cut(s)	265, 496, 814, 1063
TaiI	ACGT	2 cut(s)	135, 366
TaqI	TCGA	3 cut(s)	77, 298, 529
TatI	WGTACW	2 cut(s)	84, 216
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	3 cut(s)	572, 579, 955
Tru1I	TTAA	6 cut(s)	56, 81, 119, 350, 692, 909
Tru9I	TTAA	6 cut(s)	56, 81, 119, 350, 692, 909
TscAI	CASTG	2 cut(s)	726, 765
TseI	GCWGC	5 cut(s)	41, 233, 248, 464, 479
TspDTI	ATGAA	6 cut(s)	155, 386, 621, 803, 916, 1050
TspRI	CASTG	2 cut(s)	726, 765
Van91I	CCANNNNNTGG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	7 cut(s)	149, 309, 380, 540, 623, 915, 923
XceI	RCATGY	1 cut(s)	1043
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	28
XspI	CTAG	5 cut(s)	227, 245, 642, 1134, 1138
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.