Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Reverse (-)

54118379 .. 54119345

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATGCCACTGTTCCTTGAGCCTCGTCGGTTTCGAGCAATTTCCACGCCCTTCCGCCACCGTCGTTATACTCGGCAAGCAAAGCGTAGCAAAACCAAGAAACCCCTCTCGCCCGCCGACACCGATGACGCCGTACAAGCATCTCCCGAGGTCCCGGTTCTGCATGCCTTCATTCTGCGATCTCCGGCTCGAATCGAGCTTCAACACTCCCATAAACGAAGTCGGAACTACACTATCCTTCGAAACCCAAACTCCCGACCTCCAACTTCAACCGAGCCACCGCACGCGCTTCACGCGCCATCGTTGTGGAATTCTGGTTTTCGGATAATTGGAAAAGATATTGATATGTGTTGGAAACTTGCCATTGTAGTGAACAAGGATGAAAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.96

Weight (kDa)

10.91

Isoelectric Point (pI)

90.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	287, 296
AciI	CCGC	3 cut(s)	55, 114, 281
AcsI	RAATTY	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	203, 270
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	2 cut(s)	289, 298
AspS9I	GGNCC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	151
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	149
Bpu14I	TTCGAA	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	385
Bsh1236I	CGCG	2 cut(s)	287, 296
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	155, 185
BslFI	GGGAC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	179
BspACI	CCGC	3 cut(s)	55, 114, 281
BspFNI	CGCG	2 cut(s)	287, 296
BspLI	GGNNCC	1 cut(s)	153
BspT104I	TTCGAA	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	179
BssNI	GRCGYC	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	12, 62
BstACI	GRCGYC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	241
BstC8I	GCNNGC	4 cut(s)	78, 114, 165, 285
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	2 cut(s)	287, 296
BstHHI	GCGC	2 cut(s)	289, 298
BstKTI	GATC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 137, 293, 295
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	153
BstUI	CGCG	2 cut(s)	287, 296
BstXI	CCANNNNNNTGG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	8
Cac8I	GCNNGC	4 cut(s)	78, 114, 165, 285
CfoI	GCGC	2 cut(s)	289, 298
Cfr13I	GGNCC	1 cut(s)	151
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	4 cut(s)	22, 188, 199, 277
CviKI_1	RGCY	4 cut(s)	22, 188, 199, 277
CviQI	GTAC	1 cut(s)	134
DpnI	GATC	1 cut(s)	181
DpnII	GATC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	310
FaeI	CATG	1 cut(s)	167
FaiI	YATR	4 cut(s)	69, 165, 213, 347
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	163
FauI	CCCGC	1 cut(s)	121
GlaI	GCGC	2 cut(s)	288, 297
HapII	CCGG	2 cut(s)	155, 185
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	2 cut(s)	289, 298
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	2 cut(s)	287, 296
HinP1I	GCGC	2 cut(s)	287, 296
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	2 cut(s)	155, 185
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	225, 324
Hpy188III	TCNNGA	2 cut(s)	146, 255
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	2 cut(s)	30, 66
HpyAV	CCTTC	3 cut(s)	61, 178, 248
HpyCH4III	ACNGT	2 cut(s)	12, 62
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 137, 293, 295
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	2 cut(s)	287, 296
Kzo9I	GATC	1 cut(s)	179
LpnPI	CCDG	3 cut(s)	168, 198, 300
LweI	GCATC	1 cut(s)	149
MalI	GATC	1 cut(s)	181
MboI	GATC	1 cut(s)	179
MluCI	AATT	3 cut(s)	39, 310, 327
MmeI	TCCRAC	3 cut(s)	203, 287, 332
MnlI	CCTC	4 cut(s)	33, 116, 142, 270
MslI	CAYNNNNRTG	2 cut(s)	304, 368
MspI	CCGG	2 cut(s)	155, 185
MspR9I	CCNGG	1 cut(s)	155
MvnI	CGCG	2 cut(s)	287, 296
MwoI	GCNNNNNNNGC	4 cut(s)	82, 137, 293, 295
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	153
NmeAIII	GCCGAG	1 cut(s)	52
NspI	RCATGY	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	192
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	151
PspPPI	RGGWCCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	2 cut(s)	304, 368
Sau3AI	GATC	1 cut(s)	179
Sau96I	GGNCC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	3 cut(s)	153, 201, 262
SfaNI	GCATC	1 cut(s)	149
SfuI	TTCGAA	1 cut(s)	241
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	304, 368
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	3 cut(s)	39, 310, 327
SsiI	CCGC	3 cut(s)	55, 114, 281
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	12, 62
TaqI	TCGA	4 cut(s)	34, 190, 195, 241
TasI	AATT	3 cut(s)	39, 310, 327
TfiI	GAWTC	1 cut(s)	192
TscAI	CASTG	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.