Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

6479314 .. 6480746

Gene Structure 1433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09660.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACAGCACATACAAAATCTCTACAGCAAGTTCGGACTTGTCCGACGAGTAAGTGGAGTGTGTATTCGACCTTCGTGACTTGCGCATATGGAGGCACACTTATTCCTATTATCTTGCTCTGTCAAGTTCTCTTCCAGGGGCTTGAAATGGTAAGAAACTACTGGATTGTTTGGGCGTCAAAGAAGGAAAATGGAATTATCATAGAAGAGATGATCTGGTTTTTCGCTTTGGCTGTTATAACTTCAGCCGTCACCATTGAAACTTCCCAGCGTCTCTTGCATGGGTGTCGAATCCTCAATAGGGTGTACTGCATTAGCACTGCCACAGAATTATCCAGGATGGTTGCAATTCAAAAGGCTCCAATACTGCATCAATTTTCTGAATCAATCACGGGGGCTAAAGTAAGAAGCGTGATTGATGATTTTTCAGGAGTAGCCTTTCACAATTATGCAACCACGAAATGGCTCTCTCTGCGAATGAACTTTCTCTTCAACTTAGCCTTTTTCATAGTCCTCATCGTCTTGGTGCCCTTGCCTGCATCCGCCATTTATCCCAGTTTGGCAAGATTGGCTGCATCTTATTGCTTTAACCTCATCGTCCTTCAGGCTTGGTTATCTGGAATCTATGCAATGTCGAAAACTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

216

Amino Acids

24.19

Weight (kDa)

9.34

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc16I	TGCGCA	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	526
AccB7I	CCANNNNNTGG	1 cut(s)	462
AciI	CCGC	1 cut(s)	543
AcuI	CTGAAG	2 cut(s)	228, 587
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	301, 462
AgsI	TTSAA	4 cut(s)	146, 260, 353, 493
AjnI	CCWGG	2 cut(s)	135, 335
Alw26I	GTCTC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	526
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	2 cut(s)	137, 337
BcoDI	GTCTC	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	2 cut(s)	137, 337
BmiI	GGNNCC	2 cut(s)	360, 528
BmrFI	CCNGG	2 cut(s)	137, 337
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	3 cut(s)	379, 548, 584
BmuI	ACTGGG	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 462
Bse1I	ACTGG	2 cut(s)	167, 555
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	2 cut(s)	137, 337
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	2 cut(s)	345, 539
BseLI	CCNNNNNNNGG	2 cut(s)	301, 462
BseMI	GCAATG	1 cut(s)	636
BseNI	ACTGG	2 cut(s)	167, 555
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	559
BseYI	CCCAGC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	526
BslI	CCNNNNNNNGG	2 cut(s)	301, 462
BsmAI	GTCTC	1 cut(s)	278
BsmBI	CGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	1 cut(s)	543
BspLI	GGNNCC	2 cut(s)	360, 528
BspT107I	GGYRCC	1 cut(s)	526
BsrDI	GCAATG	1 cut(s)	636
BsrI	ACTGG	2 cut(s)	167, 555
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	213
BssNI	GRCGYC	1 cut(s)	176
Bst2UI	CCWGG	2 cut(s)	137, 337
Bst6I	CTCTTC	3 cut(s)	137, 201, 494
BstACI	GRCGYC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	1 cut(s)	496
BstF5I	GGATG	2 cut(s)	345, 539
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 472, 569
BstNI	CCWGG	2 cut(s)	137, 337
BstSCI	CCNGG	2 cut(s)	135, 335
BstSFI	CTRYAG	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	559
BtsCI	GGATG	2 cut(s)	345, 539
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	537
CfoI	GCGC	1 cut(s)	86
CseI	GACGC	2 cut(s)	165, 260
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	1 cut(s)	281
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	1 cut(s)	496
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	3 cut(s)	137, 201, 494
EarI	CTCTTC	3 cut(s)	137, 201, 494
EciI	GGCGGA	1 cut(s)	532
Eco57I	CTGAAG	2 cut(s)	228, 587
EcoRII	CCWGG	2 cut(s)	135, 335
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	1 cut(s)	284
FaiI	YATR	9 cut(s)	12, 88, 90, 203, 239, 282, 450, 509, 627
FatI	CATG	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	2 cut(s)	352, 526
Fsp4HI	GCNGC	1 cut(s)	573
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	573
GsaI	CCCAGC	1 cut(s)	271
HgaI	GACGC	2 cut(s)	165, 260
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	3 cut(s)	291, 383, 621
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	36, 45, 382
Hpy188III	TCNNGA	3 cut(s)	76, 429, 618
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	82, 178, 611
HpyCH4V	TGCA	8 cut(s)	280, 312, 347, 370, 452, 539, 575, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 472, 569
HpyF3I	CTNAG	1 cut(s)	496
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	3 cut(s)	379, 548, 584
MaeIII	GTNAC	2 cut(s)	76, 250
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	3 cut(s)	124, 218, 481
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	5 cut(s)	195, 329, 348, 374, 445
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	86, 305, 524, 602
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	447
MspR9I	CCNGG	2 cut(s)	137, 337
MvaI	CCWGG	2 cut(s)	137, 337
MwoI	GCNNNNNNNGC	3 cut(s)	277, 472, 569
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	360, 528
NmuCI	GTSAC	2 cut(s)	76, 250
NsbI	TGCGCA	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	291, 383, 621
PflMI	CCANNNNNTGG	1 cut(s)	462
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	574
PsiI	TTATAA	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	135, 335
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	2 cut(s)	135, 335
PspN4I	GGNNCC	2 cut(s)	360, 528
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	137, 337
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	2 cut(s)	74, 594
SfaNI	GCATC	3 cut(s)	379, 548, 584
SfcI	CTRYAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	447
Sse9I	AATT	5 cut(s)	195, 329, 348, 374, 445
SsiI	CCGC	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	135, 335
TaqI	TCGA	3 cut(s)	68, 289, 635
TasI	AATT	5 cut(s)	195, 329, 348, 374, 445
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	3 cut(s)	291, 383, 621
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	76, 250
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	2 cut(s)	76, 250
TspDTI	ATGAA	2 cut(s)	494, 496
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.