Rorug04G0252000

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
42486364 .. 42487665
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0252000.1

Sequence Viewer

Length: 1302 bp
ATGGAGATTGGTATTATTGCTAAAGAAAGCATTAAACCTTCTTCTCCAACTCCCATCCAATTGAAAACCTTCAATCTTTCCCTCTTGGACCAACTGGCTCCTGCTACTTACATTCCGTTGCTGCTCTTCTATACCACAAGTGATCATACTGCTGCAGCTGGAAGAAGCTTGCAGCTAAAGAAATCGCTATCTGAAACTCTAACTCGCTTCTATCCATTTGCTGGAAGAATCAAAGACAATTCCTCCATTGACTGCAATGATGATGGGGCAAGCTTCACTGAAGCTCAAGTCAGCTGCCTTCTTTCTGACATTCTCAAAGCACCAGACCACGAGGTACTAAAACAGTTGCTACCTATCAATTGTGAAGCCTTTCTAGAAGGCAGGGGATGTGTGCTGCATGTTCAAGCCAACTACTTTAAGTGCGGTGGAATCGGCCTTGGCATATGTCTTTCTCACAAGATAGCTGATGCAGCCACATTGAGCACATTCATCAGAAGTTGGGCCAATACTGCTTCTGGGATTGGCCAGAAAGTGTGTCCTATTTTTAACACCGTGTCAATAACCCCACCAAGAGATATCTCGATGACTCCACCAGCTCTTGAGAATCTTAAGATCAGAGATGACAAGTCCGTAACAAAGAGGTTTGTATTCAATGGCTCAAAGATTGCTGCTCTTAAGACCAAAGCACCTTCTATGAGTGTCAAACAAGCTACAAAGGTGGAGACGGTAGCAGCACTCATCTGGAAATGTGCAATGAAGGCTTCAAGGACAAATTTCGGATCCTCATCCAGGCCATCGGCACTGTACCAAAATGTGAACATTCGAAACAGAACAGTCCCTCCCCTACCAAATGACTCTGTTGGGAACTTTATTGGGTCCTTTATTGCGAGGGCAGAGGACGCTGAGGCAGAGTTACATGGCTTGGTTGCTGAATTAAGGAAAGGCATTGAAGAATTTTGCAAGCAAGCAAAAAGACTACCACTGAGTGAGGATATTTCGGTGATATGTGAGCCTCAGATGGAGGCTTTAAGAATGCTAACTAGTGATGACATGGACTTGTATGCGTGCACAAGTTGGTGTAGGTTTCCACTATACGAGGCTGCAGATTTTGGGTGGGGAAAACCAATTTGGGTGAGCTCAGGTATTCCACCTGCCAAGAATATGGTATTTCTGATGGATGCAAAAGGCGGTGATGGAATAGAGTCCTGGGTAAGACTGAGCCAAGAAGACATAAAACTATTCGAGTGTGATCAAGAGCTGCTGGCGTATGCATCTTTGAATCCAAGCATCTCATCTTATTAA

Protein Analysis

433

Amino Acids

47.41

Weight (kDa)

6.93

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 420 3.3e-96 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1159
Acc36I ACCTGC 1 cut(s) 1159
AccB7I CCANNNNNTGG 1 cut(s) 221
AciI CCGC 2 cut(s) 423, 1188
AclWI GGATC 2 cut(s) 774, 787
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 2 cut(s) 772, 953
AcuI CTGAAG 1 cut(s) 300
AdeI CACNNNGTG 1 cut(s) 986
AfaI GTAC 2 cut(s) 336, 806
AfiI CCNNNNNNNGG 2 cut(s) 221, 789
AflII CTTAAG 2 cut(s) 608, 674
AgsI TTSAA 7 cut(s) 64, 73, 404, 652, 765, 950, 1279
AhlI ACTAGT 1 cut(s) 1040
AjnI CCWGG 2 cut(s) 788, 1205
AjuI GAANNNNNNNTTGG 2 cut(s) 1111, 1143
AloI GAACNNNNNNTCC 2 cut(s) 823, 855
Alw21I GWGCWC 3 cut(s) 485, 1070, 1139
Alw26I GTCTC 1 cut(s) 716
Alw44I GTGCAC 1 cut(s) 1066
AlwI GGATC 2 cut(s) 774, 787
AoxI GGCC 4 cut(s) 433, 501, 523, 791
ApaLI GTGCAC 1 cut(s) 1066
ApoI RAATTY 2 cut(s) 772, 953
Asp700I GAANNNNTTC 2 cut(s) 68, 369
AspS9I GGNCC 3 cut(s) 88, 501, 876
AsuHPI GGTGA 3 cut(s) 1012, 1144, 1202
AsuII TTCGAA 1 cut(s) 823
AvaII GGWCC 2 cut(s) 88, 876
BaeGI GKGCMC 1 cut(s) 1070
BalI TGGCCA 1 cut(s) 525
BamHI GGATCC 1 cut(s) 779
BanII GRGCYC 1 cut(s) 1139
BauI CACGAG 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 1233
Bbv12I GWGCWC 3 cut(s) 485, 1070, 1139
BbvCI CCTCAGC 1 cut(s) 903
BccI CCATC 6 cut(s) 62, 257, 802, 1012, 1168, 1187
BciT130I CCWGG 2 cut(s) 790, 1207
BclI TGATCA 2 cut(s) 142, 1249
BcoDI GTCTC 1 cut(s) 716
BcuI ACTAGT 1 cut(s) 1040
BfaI CTAG 2 cut(s) 374, 1041
BfmI CTRYAG 2 cut(s) 153, 1101
BfrI CTTAAG 2 cut(s) 608, 674
BfuAI ACCTGC 1 cut(s) 1159
Bme1390I CCNGG 2 cut(s) 790, 1207
Bme18I GGWCC 2 cut(s) 88, 876
BmgT120I GGNCC 3 cut(s) 88, 501, 876
BmiI GGNNCC 3 cut(s) 99, 781, 877
BmrFI CCNGG 2 cut(s) 790, 1207
BmsI GCATC 4 cut(s) 457, 1168, 1280, 1296
BpiI GAAGAC 1 cut(s) 1233
Bpu10I CCTNAGC 2 cut(s) 903, 1138
Bpu14I TTCGAA 1 cut(s) 823
BpuEI CTTGAG 2 cut(s) 270, 620
BsaBI GATNNNNATC 1 cut(s) 784
BsaJI CCNNGG 2 cut(s) 436, 1206
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 823, 853
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 789
Bse1I ACTGG 1 cut(s) 99
Bse3DI GCAATG 2 cut(s) 262, 759
Bse8I GATNNNNATC 1 cut(s) 784
BseBI CCWGG 2 cut(s) 790, 1207
BseDI CCNNGG 2 cut(s) 436, 1206
BseGI GGATG 4 cut(s) 54, 392, 785, 1183
BseJI GATNNNNATC 1 cut(s) 784
BseLI CCNNNNNNNGG 2 cut(s) 221, 789
BseMI GCAATG 2 cut(s) 262, 759
BseMII CTCAG 5 cut(s) 894, 974, 1028, 1152, 1208
BseNI ACTGG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 1070
BshFI GGCC 4 cut(s) 435, 503, 525, 793
BsiHKAI GWGCWC 3 cut(s) 485, 1070, 1139
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 2 cut(s) 221, 789
BsmAI GTCTC 1 cut(s) 716
BsmBI CGTCTC 1 cut(s) 716
BsmFI GGGAC 1 cut(s) 821
BsmI GAATGC 1 cut(s) 1038
BsnI GGCC 4 cut(s) 435, 503, 525, 793
Bsp119I TTCGAA 1 cut(s) 823
Bsp1286I GDGCHC 3 cut(s) 485, 1070, 1139
Bsp143I GATC 4 cut(s) 142, 612, 779, 1249
BspACI CCGC 2 cut(s) 423, 1188
BspANI GGCC 4 cut(s) 435, 503, 525, 793
BspCNI CTCAG 5 cut(s) 895, 975, 1027, 1151, 1209
BspLI GGNNCC 3 cut(s) 99, 781, 877
BspMAI CTGCAG 2 cut(s) 157, 1105
BspMI ACCTGC 1 cut(s) 1159
BspPI GGATC 2 cut(s) 774, 787
BspQI GCTCTTC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 823
BspTI CTTAAG 2 cut(s) 608, 674
BsrDI GCAATG 2 cut(s) 262, 759
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 2 cut(s) 436, 1206
BssMI GATC 4 cut(s) 142, 612, 779, 1249
BssSI CACGAG 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 436
Bst2BI CACGAG 1 cut(s) 329
Bst2UI CCWGG 2 cut(s) 790, 1207
Bst4CI ACNGT 5 cut(s) 345, 553, 727, 804, 835
Bst6I CTCTTC 1 cut(s) 131
BstAFI CTTAAG 2 cut(s) 608, 674
BstBI TTCGAA 1 cut(s) 823
BstC8I GCNNGC 6 cut(s) 170, 271, 962, 966, 1066, 1263
BstDEI CTNAG 5 cut(s) 903, 983, 1014, 1138, 1217
BstENI CCTNNNNNAGG 1 cut(s) 787
BstF5I GGATG 4 cut(s) 54, 392, 785, 1183
BstKTI GATC 4 cut(s) 145, 615, 782, 1252
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 4 cut(s) 142, 612, 779, 1249
BstMWI GCNNNNNNNGC 4 cut(s) 470, 509, 758, 899
BstNI CCWGG 2 cut(s) 790, 1207
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 788, 1205
BstSFI CTRYAG 2 cut(s) 153, 1101
BstSLI GKGCMC 1 cut(s) 1070
BstV2I GAAGAC 1 cut(s) 1233
BstX2I RGATCY 1 cut(s) 779
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 1 cut(s) 779
BsuRI GGCC 4 cut(s) 435, 503, 525, 793
BtsCI GGATG 4 cut(s) 54, 392, 785, 1183
BtsIMutI CAGTG 3 cut(s) 276, 800, 980
BveI ACCTGC 1 cut(s) 1159
Cac8I GCNNGC 6 cut(s) 170, 271, 962, 966, 1066, 1263
Cfr13I GGNCC 3 cut(s) 88, 501, 876
CseI GACGC 1 cut(s) 908
Csp6I GTAC 2 cut(s) 335, 805
CviAII CATG 3 cut(s) 398, 917, 1051
CviQI GTAC 2 cut(s) 335, 805
DdeI CTNAG 5 cut(s) 903, 983, 1014, 1138, 1217
DpnI GATC 4 cut(s) 144, 614, 781, 1251
DpnII GATC 4 cut(s) 142, 612, 779, 1249
DraIII CACNNNGTG 1 cut(s) 986
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 1137
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 1139
Eco32I GATATC 1 cut(s) 577
Eco47I GGWCC 2 cut(s) 88, 876
Eco53kI GAGCTC 1 cut(s) 1137
Eco57I CTGAAG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 1137
EcoNI CCTNNNNNAGG 1 cut(s) 787
EcoO109I RGGNCCY 1 cut(s) 876
EcoRII CCWGG 2 cut(s) 788, 1205
EcoRV GATATC 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 1273
EcoT38I GRGCYC 1 cut(s) 1139
ErhI CCWWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 716
FaeI CATG 3 cut(s) 401, 920, 1054
FaqI GGGAC 1 cut(s) 821
FatI CATG 3 cut(s) 397, 916, 1050
FauNDI CATATG 1 cut(s) 443
FbaI TGATCA 2 cut(s) 142, 1249
FokI GGATG 4 cut(s) 41, 399, 772, 1190
FriOI GRGCYC 1 cut(s) 1139
FspBI CTAG 2 cut(s) 374, 1041
HaeIII GGCC 4 cut(s) 435, 503, 525, 793
HgaI GACGC 1 cut(s) 908
Hin1II CATG 3 cut(s) 401, 920, 1054
HindIII AAGCTT 2 cut(s) 166, 271
HinfI GANTC 7 cut(s) 228, 429, 586, 604, 854, 1202, 1279
HphI GGTGA 3 cut(s) 1012, 1144, 1202
Hpy166II GTNNAC 2 cut(s) 817, 1068
Hpy188I TCNGA 7 cut(s) 193, 307, 494, 617, 779, 1017, 1173
Hpy188III TCNNGA 5 cut(s) 374, 580, 599, 742, 1253
Hpy8I GTNNAC 2 cut(s) 817, 1068
HpyAV CCTTC 6 cut(s) 48, 79, 308, 371, 699, 751
HpyCH4III ACNGT 5 cut(s) 345, 553, 727, 804, 835
HpyF10VI GCNNNNNNNGC 4 cut(s) 470, 509, 758, 899
HpyF3I CTNAG 5 cut(s) 903, 983, 1014, 1138, 1217
Hsp92II CATG 3 cut(s) 401, 920, 1054
Ksp22I TGATCA 2 cut(s) 142, 1249
Kzo9I GATC 4 cut(s) 142, 612, 779, 1249
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 103
LweI GCATC 4 cut(s) 457, 1168, 1280, 1296
MaeI CTAG 2 cut(s) 374, 1041
MaeIII GTNAC 2 cut(s) 631, 912
MalI GATC 4 cut(s) 144, 614, 781, 1251
MboI GATC 4 cut(s) 142, 612, 779, 1249
MboII GAAGA 6 cut(s) 33, 118, 174, 237, 962, 1238
MfeI CAATTG 2 cut(s) 59, 358
MflI RGATCY 1 cut(s) 779
MhlI GDGCHC 3 cut(s) 485, 1070, 1139
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 7 cut(s) 59, 238, 358, 772, 932, 953, 1125
MluNI TGGCCA 1 cut(s) 525
MlyI GAGTC 3 cut(s) 580, 848, 1211
MmeI TCCRAC 1 cut(s) 71
Mox20I TGGCCA 1 cut(s) 525
Mph1103I ATGCAT 1 cut(s) 1273
MroXI GAANNNNTTC 2 cut(s) 68, 369
MscI TGGCCA 1 cut(s) 525
MseI TTAA 8 cut(s) 33, 417, 546, 609, 675, 935, 1028, 1300
Msp20I TGGCCA 1 cut(s) 525
MspA1I CMGCKG 2 cut(s) 158, 294
MspCI CTTAAG 2 cut(s) 608, 674
MspR9I CCNGG 2 cut(s) 790, 1207
MunI CAATTG 2 cut(s) 59, 358
Mva1269I GAATGC 1 cut(s) 1038
MvaI CCWGG 2 cut(s) 790, 1207
MwoI GCNNNNNNNGC 4 cut(s) 470, 509, 758, 899
NdeI CATATG 1 cut(s) 443
NdeII GATC 4 cut(s) 142, 612, 779, 1249
NlaIII CATG 3 cut(s) 401, 920, 1054
NlaIV GGNNCC 3 cut(s) 99, 781, 877
NsiI ATGCAT 1 cut(s) 1273
NspI RCATGY 1 cut(s) 401
NspV TTCGAA 1 cut(s) 823
PaqCI CACCTGC 1 cut(s) 1159
PciSI GCTCTTC 1 cut(s) 131
PctI GAATGC 1 cut(s) 1038
PdmI GAANNNNTTC 2 cut(s) 68, 369
PfeI GAWTC 4 cut(s) 228, 429, 604, 1279
PflMI CCANNNNNTGG 1 cut(s) 221
PleI GAGTC 3 cut(s) 580, 848, 1210
PpsI GAGTC 3 cut(s) 580, 848, 1210
PpuMI RGGWCCY 1 cut(s) 876
Psp124BI GAGCTC 1 cut(s) 1139
Psp5II RGGWCCY 1 cut(s) 876
Psp6I CCWGG 2 cut(s) 788, 1205
PspGI CCWGG 2 cut(s) 788, 1205
PspN4I GGNNCC 3 cut(s) 99, 781, 877
PspPI GGNCC 3 cut(s) 88, 501, 876
PspPPI RGGWCCY 1 cut(s) 876
PstI CTGCAG 2 cut(s) 157, 1105
PsuI RGATCY 1 cut(s) 779
PvuII CAGCTG 2 cut(s) 158, 294
RsaI GTAC 2 cut(s) 336, 806
RsaNI GTAC 2 cut(s) 335, 805
SacI GAGCTC 1 cut(s) 1139
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 8 cut(s) 33, 417, 546, 609, 675, 935, 1028, 1300
Sau3AI GATC 4 cut(s) 142, 612, 779, 1249
Sau96I GGNCC 3 cut(s) 88, 501, 876
SchI GAGTC 3 cut(s) 580, 848, 1211
ScrFI CCNGG 2 cut(s) 790, 1207
SduI GDGCHC 3 cut(s) 485, 1070, 1139
SfaNI GCATC 4 cut(s) 457, 1168, 1280, 1296
SfcI CTRYAG 2 cut(s) 153, 1101
SfuI TTCGAA 1 cut(s) 823
SinI GGWCC 2 cut(s) 88, 876
SmlI CTYRAG 4 cut(s) 285, 599, 608, 674
SmoI CTYRAG 4 cut(s) 285, 599, 608, 674
SpeI ACTAGT 1 cut(s) 1040
Sse9I AATT 7 cut(s) 59, 238, 358, 772, 932, 953, 1125
SsiI CCGC 2 cut(s) 423, 1188
SspMI CTAG 2 cut(s) 374, 1041
SstI GAGCTC 1 cut(s) 1139
StyD4I CCNGG 2 cut(s) 788, 1205
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 5 cut(s) 345, 553, 727, 804, 835
TaqI TCGA 3 cut(s) 581, 823, 1242
TasI AATT 7 cut(s) 59, 238, 358, 772, 932, 953, 1125
TfiI GAWTC 4 cut(s) 228, 429, 604, 1279
Tru1I TTAA 8 cut(s) 33, 417, 546, 609, 675, 935, 1028, 1300
Tru9I TTAA 8 cut(s) 33, 417, 546, 609, 675, 935, 1028, 1300
TscAI CASTG 3 cut(s) 283, 807, 987
TspDTI ATGAA 2 cut(s) 478, 770
TspGWI ACGGA 2 cut(s) 105, 619
TspRI CASTG 3 cut(s) 283, 807, 987
Van91I CCANNNNNTGG 1 cut(s) 221
Vha464I CTTAAG 2 cut(s) 608, 674
VneI GTGCAC 1 cut(s) 1066
VpaK11BI GGWCC 2 cut(s) 88, 876
XagI CCTNNNNNAGG 1 cut(s) 787
XapI RAATTY 2 cut(s) 772, 953
XbaI TCTAGA 1 cut(s) 373
XceI RCATGY 1 cut(s) 401
XmnI GAANNNNTTC 2 cut(s) 68, 369
XspI CTAG 2 cut(s) 374, 1041
Zsp2I ATGCAT 1 cut(s) 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.