Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

48294203 .. 48295475

Gene Structure 1273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50322

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCATCGACCCCAACCTCTCTTTTCCGCTCTCCTTCTCTCTGCCACCACCGGAGACTCCAGGTCCAGCCACCATCTCATCACACCGCCTCCACCACTAGATCCAGCACCCAAAACCGACCAAACTCGAGCCTCACCTTTCGACATGCATCGCCCACAGCCACCGTACACGACCACCAAACCTATGACACCACTGCCCTCCTTAATCCTTCGATCTCCAGTCCCTCATTCACACCACCGTTATCAGAAATTGAAGCACCAAGCCTTAAAGAGACCATGCCTTAAATCTCGAAGTCTGAAAACCGCCGTACGAGCTCGCTGGAACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.35

Weight (kDa)

11.47

Isoelectric Point (pI)

86.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	29
AciI	CCGC	3 cut(s)	27, 86, 303
AclWI	GGATC	1 cut(s)	95
AfaI	GTAC	2 cut(s)	167, 309
AgsI	TTSAA	1 cut(s)	253
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	2 cut(s)	48, 265
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	126
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	316
BccI	CCATC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	48, 265
BfaI	CTAG	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	63
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	13, 157
BpmI	CTGGAG	2 cut(s)	43, 201
BsaI	GGTCTC	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	51
BsiWI	CGTACG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	48, 265
BsmFI	GGGAC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	100, 212
BspACI	CCGC	3 cut(s)	27, 86, 303
BspPI	GGATC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	265
BsrBI	CCGCTC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	100, 212
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	165, 239
BstC8I	GCNNGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	103, 215
BstMAI	GTCTC	2 cut(s)	48, 265
BstMBI	GATC	2 cut(s)	100, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	2 cut(s)	166, 308
CviAII	CATG	2 cut(s)	145, 276
CviJI	RGCY	5 cut(s)	69, 131, 160, 263, 314
CviKI_1	RGCY	5 cut(s)	69, 131, 160, 263, 314
CviQI	GTAC	2 cut(s)	166, 308
DpnI	GATC	2 cut(s)	102, 214
DpnII	GATC	2 cut(s)	100, 212
DriI	GACNNNNNGTC	1 cut(s)	61
Eam1105I	GACNNNNNGTC	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	59
EcoT22I	ATGCAT	2 cut(s)	6, 150
EcoT38I	GRGCYC	1 cut(s)	316
FaeI	CATG	2 cut(s)	148, 279
FaiI	YATR	3 cut(s)	146, 185, 277
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	144, 275
FriOI	GRGCYC	1 cut(s)	316
FspBI	CTAG	1 cut(s)	98
GsuI	CTGGAG	2 cut(s)	43, 201
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	148, 279
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	246, 297
Hpy188III	TCNNGA	1 cut(s)	288
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	2 cut(s)	44, 218
HpyCH4III	ACNGT	2 cut(s)	165, 239
HpyCH4V	TGCA	2 cut(s)	4, 148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
Hsp92II	CATG	2 cut(s)	148, 279
Kzo9I	GATC	2 cut(s)	100, 212
LpnPI	CCDG	7 cut(s)	46, 64, 73, 79, 117, 231, 304
LweI	GCATC	2 cut(s)	13, 157
MaeI	CTAG	1 cut(s)	98
MalI	GATC	2 cut(s)	102, 214
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	2 cut(s)	100, 212
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	5 cut(s)	27, 99, 142, 208, 234
Mph1103I	ATGCAT	2 cut(s)	6, 150
MseI	TTAA	3 cut(s)	203, 266, 282
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	2 cut(s)	100, 212
NlaIII	CATG	2 cut(s)	148, 279
NsiI	ATGCAT	2 cut(s)	6, 150
NspI	RCATGY	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	126
Pfl23II	CGTACG	1 cut(s)	307
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspLI	CGTACG	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	63
PspXI	VCTCGAGB	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	2 cut(s)	167, 309
RsaNI	GTAC	2 cut(s)	166, 308
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	203, 266, 282
Sau3AI	GATC	2 cut(s)	100, 212
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	5 cut(s)	19, 65, 139, 184, 316
SfaNI	GCATC	2 cut(s)	13, 157
Sfr274I	CTCGAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	63
SlaI	CTCGAG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	3 cut(s)	27, 86, 303
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	165, 239
TaqI	TCGA	5 cut(s)	7, 127, 141, 211, 289
TasI	AATT	1 cut(s)	248
Tru1I	TTAA	3 cut(s)	203, 266, 282
Tru9I	TTAA	3 cut(s)	203, 266, 282
TscAI	CASTG	1 cut(s)	198
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	63
XceI	RCATGY	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	126
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	2 cut(s)	6, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.