Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

54190706 .. 54191410

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTGCAACTCAGAAGGCTCCAATACTGCATCATTTTTCAGAATCAATCGTAGGAGCTACAACGATTCGTTGTTTTAATCAACAAAATCGATTCTTGACAAAAGCAATGAATGAAATTGATGACTTTTCTCAAGTAGCCTTTCATAACAATGCAACAATGGAATGGCTATCTGTGAGAATAAATCTTCTGTTCAATCTAGCCTTCCTTGTAGTGCTTATTGTCTTGGTGAACCAGCCTAAGTCTGCCATTGACCCTACTTTGGCAGGAGTGGCTGCATCATATGGTCTAAACGTTACTATCCTGCAGGCTTGGGTGATTTGGAATCTATGCAATGTTGAAAACAAAATGATATCTGTTGAGAGAATTCTTCAATTCACTGGAATAGAAAGTGAGGCACCACTTGTGATCGAAGCCTCTAGGCAAAACTCCGAATGGCCAACTGAAGGACAAATTGAATTTCAAAACGTGCAAGTTCAATATCAGCCTGAGGGTCCAATGGTACTGAAAGGGATCACTTGCACATTCTCTATAAAAAAGAGAAAATTGGAGTGGTGGGAAGAACAGGAAGTGGAAAGTCCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

195

Amino Acids

22.14

Weight (kDa)

5.1

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	4 - 75	6.8e-08	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	397
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	2 cut(s)	366, 458
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	2 cut(s)	262, 446
AgsI	TTSAA	6 cut(s)	196, 341, 374, 458, 464, 479
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	2 cut(s)	5, 275
ApoI	RAATTY	2 cut(s)	366, 458
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	241, 328
AvaII	GGWCC	1 cut(s)	494
AxyI	CCTNAGG	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	200, 420
BfmI	CTRYAG	1 cut(s)	305
BisI	GCNGC	2 cut(s)	6, 276
BlsI	GCNGC	2 cut(s)	7, 277
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	3 cut(s)	21, 399, 495
BmsI	GCATC	2 cut(s)	40, 287
BpuEI	CTTGAG	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 446
Bse1I	ACTGG	1 cut(s)	385
Bse21I	CCTNAGG	1 cut(s)	489
Bse3DI	GCAATG	2 cut(s)	114, 340
BseCI	ATCGAT	1 cut(s)	91
BseLI	CCNNNNNNNGG	2 cut(s)	262, 446
BseMI	GCAATG	2 cut(s)	114, 340
BseMII	CTCAG	2 cut(s)	26, 480
BseNI	ACTGG	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	1 cut(s)	439
BshNI	GGYRCC	1 cut(s)	397
BshVI	ATCGAT	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	262, 446
BsnI	GGCC	1 cut(s)	439
Bsp143I	GATC	2 cut(s)	408, 513
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	2 cut(s)	25, 481
BspDI	ATCGAT	1 cut(s)	91
BspLI	GGNNCC	3 cut(s)	21, 399, 495
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	397
BsrDI	GCAATG	2 cut(s)	114, 340
BsrI	ACTGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	408, 513
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	12, 240, 489
BstKTI	GATC	2 cut(s)	411, 516
BstMBI	GATC	2 cut(s)	408, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	439
BsuTUI	ATCGAT	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	494
ClaI	ATCGAT	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	503
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	3 cut(s)	12, 240, 489
DpnI	GATC	2 cut(s)	410, 515
DpnII	GATC	2 cut(s)	408, 513
EaeI	YGGCCR	1 cut(s)	437
Eco32I	GATATC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	465
Eco81I	CCTNAGG	1 cut(s)	489
EcoRI	GAATTC	1 cut(s)	366
EcoRV	GATATC	1 cut(s)	354
FaiI	YATR	6 cut(s)	147, 283, 285, 331, 533, 586
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	6, 276
Fsp4HI	GCNGC	2 cut(s)	6, 276
FspBI	CTAG	2 cut(s)	200, 420
GluI	GCNGC	2 cut(s)	6, 276
HaeIII	GGCC	1 cut(s)	439
HinfI	GANTC	4 cut(s)	44, 67, 93, 325
HphI	GGTGA	2 cut(s)	241, 328
Hpy166II	GTNNAC	2 cut(s)	232, 581
Hpy188I	TCNGA	3 cut(s)	15, 43, 433
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	232, 581
HpyAV	CCTTC	3 cut(s)	10, 214, 440
HpyCH4IV	ACGT	2 cut(s)	294, 468
HpyCH4V	TGCA	8 cut(s)	8, 31, 155, 278, 307, 333, 472, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	12, 240, 489
HpySE526I	ACGT	2 cut(s)	294, 468
Kzo9I	GATC	2 cut(s)	408, 513
LmnI	GCTCC	2 cut(s)	25, 56
LpnPI	CCDG	7 cut(s)	248, 252, 293, 317, 366, 501, 551
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	40, 287
MaeI	CTAG	2 cut(s)	200, 420
MaeII	ACGT	2 cut(s)	294, 468
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	2 cut(s)	410, 515
MboI	GATC	2 cut(s)	408, 513
MboII	GAAGA	3 cut(s)	179, 362, 572
MlsI	TGGCCA	1 cut(s)	439
MluCI	AATT	6 cut(s)	117, 366, 374, 453, 458, 545
MluNI	TGGCCA	1 cut(s)	439
MnlI	CCTC	3 cut(s)	388, 427, 484
Mox20I	TGGCCA	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	439
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	439
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	2 cut(s)	408, 513
NlaIV	GGNNCC	3 cut(s)	21, 399, 495
PfeI	GAWTC	4 cut(s)	44, 67, 93, 325
PkrI	GCNGC	2 cut(s)	7, 277
Psp1406I	AACGTT	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	21, 399, 495
PspPI	GGNCC	1 cut(s)	494
PstI	CTGCAG	1 cut(s)	309
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	6, 276
Sau3AI	GATC	2 cut(s)	408, 513
Sau96I	GGNCC	1 cut(s)	494
SbfI	CCTGCAGG	1 cut(s)	309
SdaI	CCTGCAGG	1 cut(s)	309
SetI	ASST	3 cut(s)	61, 297, 471
SfaNI	GCATC	2 cut(s)	40, 287
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse8387I	CCTGCAGG	1 cut(s)	309
Sse9I	AATT	6 cut(s)	117, 366, 374, 453, 458, 545
SspMI	CTAG	2 cut(s)	200, 420
TaiI	ACGT	2 cut(s)	297, 471
TaqI	TCGA	2 cut(s)	91, 411
TasI	AATT	6 cut(s)	117, 366, 374, 453, 458, 545
TfiI	GAWTC	4 cut(s)	44, 67, 93, 325
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	2 cut(s)	5, 275
TspDTI	ATGAA	3 cut(s)	125, 129, 134
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	2 cut(s)	366, 458
XspI	CTAG	2 cut(s)	200, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.