Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

19955620 .. 19956337

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAAATTAAACGATAGTTTTGGTCGGCCTAAGTTCCATGCCGCAGCTGCAATGGAATGGCTATGTTTTCGCTTGGATATGTTGTCATCTATCACATTTGGATTTTCCTTGATTTTCTTGATTTCTATTCCAGCAGGGGTGATCAATCCAGGCATTGCGGGATTGGCTGTCACATATGGACTTAATCTAAACATGTTACAAGCTTGGTGTATATGGAATCTTTGCAATGTGGAGAACAAAATAATATCAGTGGAGAGATTAATACAGTACACTAATATTCCCAGTGAGCCTCCTCTTGTAATAGAATCCAATCGGCCGGATCGTTCTTGGCCATCACATGGAGAAGTTGATATACGTGATCTTCAGGTCCGCTATGCTCCACACATGCCACTTGTGTTGCGAGGTCTCACATGTACCTTTCCTGGGGGACTGAAAACTGGGATTGTAGGGAGAACTGGCAGTGGCAAATCTACTCTCATACAAACCCTTTTCCGAATTGTGGATCGATCCGATCTTGTGCCGGCCAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

178

Amino Acids

19.69

Weight (kDa)

9.07

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	338
AciI	CCGC	3 cut(s)	42, 158, 370
AclWI	GGATC	3 cut(s)	327, 501, 510
AcoI	YGGCCR	3 cut(s)	314, 329, 522
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	269, 415
AfiI	CCNNNNNNNGG	3 cut(s)	338, 423, 499
AflIII	ACRYGT	2 cut(s)	192, 410
AjnI	CCWGG	2 cut(s)	148, 421
AluBI	AGCT	2 cut(s)	47, 203
AluI	AGCT	2 cut(s)	47, 203
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	3 cut(s)	327, 501, 510
AoxI	GGCC	4 cut(s)	26, 314, 329, 522
ApeKI	GCWGC	2 cut(s)	44, 47
AseI	ATTAAT	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	331
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbvI	GCAGC	2 cut(s)	34, 56
BccI	CCATC	1 cut(s)	340
BciT130I	CCWGG	2 cut(s)	150, 423
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	410
BisI	GCNGC	3 cut(s)	42, 45, 48
BlsI	GCNGC	3 cut(s)	43, 46, 49
Bme1390I	CCNGG	2 cut(s)	150, 423
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmrFI	CCNGG	2 cut(s)	150, 423
BmrI	ACTGGG	2 cut(s)	276, 447
BmuI	ACTGGG	2 cut(s)	276, 447
Bsa29I	ATCGAT	1 cut(s)	505
BsaAI	YACGTR	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 423, 499
Bse118I	RCCGGY	1 cut(s)	520
Bse1I	ACTGG	3 cut(s)	282, 442, 460
Bse3DI	GCAATG	3 cut(s)	57, 153, 232
BseBI	CCWGG	2 cut(s)	150, 423
BseCI	ATCGAT	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	422
BseLI	CCNNNNNNNGG	3 cut(s)	338, 423, 499
BseMI	GCAATG	3 cut(s)	57, 153, 232
BseNI	ACTGG	3 cut(s)	282, 442, 460
BseRI	GAGGAG	1 cut(s)	282
BseX3I	CGGCCG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	34, 56
Bsh1285I	CGRYCG	1 cut(s)	317
BshFI	GGCC	4 cut(s)	28, 316, 331, 524
BshVI	ATCGAT	1 cut(s)	505
BsiEI	CGRYCG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	317, 521
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	3 cut(s)	338, 423, 499
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	4 cut(s)	28, 316, 331, 524
Bso31I	GGTCTC	1 cut(s)	410
Bsp143I	GATC	6 cut(s)	141, 319, 358, 502, 506, 511
BspACI	CCGC	3 cut(s)	42, 158, 370
BspANI	GGCC	4 cut(s)	28, 316, 331, 524
BspDI	ATCGAT	1 cut(s)	505
BspPI	GGATC	3 cut(s)	327, 501, 510
BspTNI	GGTCTC	1 cut(s)	410
BsrDI	GCAATG	3 cut(s)	57, 153, 232
BsrFI	RCCGGY	1 cut(s)	520
BsrI	ACTGG	3 cut(s)	282, 442, 460
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	6 cut(s)	141, 319, 358, 502, 506, 511
Bst2UI	CCWGG	2 cut(s)	150, 423
Bst4CI	ACNGT	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	1 cut(s)	30
BstKTI	GATC	6 cut(s)	144, 322, 361, 505, 509, 514
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	6 cut(s)	141, 319, 358, 502, 506, 511
BstMCI	CGRYCG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 164
BstNI	CCWGG	2 cut(s)	150, 423
BstNSI	RCATGY	3 cut(s)	196, 388, 414
BstSCI	CCNGG	2 cut(s)	148, 421
BstV1I	GCAGC	2 cut(s)	34, 56
BstZI	CGGCCG	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	28, 316, 331, 524
BsuTUI	ATCGAT	1 cut(s)	505
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	3 cut(s)	255, 289, 466
Cac8I	GCNNGC	1 cut(s)	522
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	367
ClaI	ATCGAT	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	268, 414
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	5 cut(s)	38, 193, 338, 385, 411
CviJI	RGCY	9 cut(s)	28, 47, 61, 167, 203, 289, 316, 331, 524
CviKI_1	RGCY	9 cut(s)	28, 47, 61, 167, 203, 289, 316, 331, 524
CviQI	GTAC	2 cut(s)	268, 414
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	6 cut(s)	143, 321, 360, 504, 508, 513
DpnII	GATC	6 cut(s)	141, 319, 358, 502, 506, 511
EaeI	YGGCCR	3 cut(s)	314, 329, 522
EagI	CGGCCG	1 cut(s)	314
EclXI	CGGCCG	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	367
Eco52I	CGGCCG	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	148, 421
FaeI	CATG	5 cut(s)	41, 196, 341, 388, 414
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	5 cut(s)	37, 192, 337, 384, 410
FauI	CCCGC	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	42, 45, 48
Fsp4HI	GCNGC	3 cut(s)	42, 45, 48
GluI	GCNGC	3 cut(s)	42, 45, 48
HaeIII	GGCC	4 cut(s)	28, 316, 331, 524
HapII	CCGG	2 cut(s)	317, 521
Hin1II	CATG	5 cut(s)	41, 196, 341, 388, 414
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	2 cut(s)	217, 305
HpaII	CCGG	2 cut(s)	317, 521
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	494, 511
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	2 cut(s)	50, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 164
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	5 cut(s)	41, 196, 341, 388, 414
KroI	GCCGGC	1 cut(s)	520
KroNI	GCCGGC	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	6 cut(s)	141, 319, 358, 502, 506, 511
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	2 cut(s)	34, 56
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	169, 195
MalI	GATC	6 cut(s)	143, 321, 360, 504, 508, 513
MboI	GATC	6 cut(s)	141, 319, 358, 502, 506, 511
MboII	GAAGA	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	331
MluCI	AATT	2 cut(s)	5, 495
MluNI	TGGCCA	1 cut(s)	331
MnlI	CCTC	3 cut(s)	300, 303, 395
Mox20I	TGGCCA	1 cut(s)	331
MroNI	GCCGGC	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	331
MseI	TTAA	3 cut(s)	8, 183, 260
Msp20I	TGGCCA	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	2 cut(s)	317, 521
MspR9I	CCNGG	2 cut(s)	150, 423
MvaI	CCWGG	2 cut(s)	150, 423
MwoI	GCNNNNNNNGC	2 cut(s)	47, 164
NaeI	GCCGGC	1 cut(s)	522
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	6 cut(s)	141, 319, 358, 502, 506, 511
NgoMIV	GCCGGC	1 cut(s)	520
NlaIII	CATG	5 cut(s)	41, 196, 341, 388, 414
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	3 cut(s)	196, 388, 414
PciI	ACATGT	2 cut(s)	192, 410
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PdiI	GCCGGC	1 cut(s)	522
PfeI	GAWTC	2 cut(s)	217, 305
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	43, 46, 49
Ppu21I	YACGTR	1 cut(s)	356
PscI	ACATGT	2 cut(s)	192, 410
PshBI	ATTAAT	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	148, 421
PspGI	CCWGG	2 cut(s)	148, 421
PspPI	GGNCC	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	2 cut(s)	269, 415
RsaNI	GTAC	2 cut(s)	268, 414
SaqAI	TTAA	3 cut(s)	8, 183, 260
SatI	GCNGC	3 cut(s)	42, 45, 48
Sau3AI	GATC	6 cut(s)	141, 319, 358, 502, 506, 511
Sau96I	GGNCC	1 cut(s)	367
ScrFI	CCNGG	2 cut(s)	150, 423
SetI	ASST	6 cut(s)	49, 205, 358, 369, 406, 419
SinI	GGWCC	1 cut(s)	367
Sse9I	AATT	2 cut(s)	5, 495
SsiI	CCGC	3 cut(s)	42, 158, 370
SspI	AATATT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	148, 421
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	505
TasI	AATT	2 cut(s)	5, 495
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	217, 305
Tru1I	TTAA	3 cut(s)	8, 183, 260
Tru9I	TTAA	3 cut(s)	8, 183, 260
TscAI	CASTG	3 cut(s)	255, 289, 466
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	44, 47
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	255, 289, 466
Van91I	CCANNNNNTGG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	367
VspI	ATTAAT	1 cut(s)	260
XceI	RCATGY	3 cut(s)	196, 388, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.