Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

48029066 .. 48043960

Gene Structure 14895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG312400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGGAGTCTGGAGAGTTTTCTTGGAAGGCAAGCAATGAACATGTAGAGAGACCTACAATCACAGTTGGAGAAAAAATAACTATGAGAAAGGGATGCAAGGTGGGAGTTTGCGGTTCTGTTGGCTCGGGCAAGTCTAGCCTACTATGCAGTATACTTGGTGAGATTCCAAAAATTTCTGGGCAAGCAACCAAGTGTTATGGAACAAAATCTTACGTCCCACAAAGTCCATGGATCCAAACTGGAACCATAAGGGACAACATCTTGTTTGGTAAGGAGGTGAACGAGGGTTTCTATAAGAACATTGTGGAATGTTGTGCCATGGACCAGGATTTCAAGATGTGGCCTAACGGAGATTTGACAGTCGTGGGGGAAAGAGGATTAAATCTAAGTGGAGGCCAAAAACAAAGGATTCAACTCGCAAGAGCTGTCTACAATGATGCTGATATATATGTCTTGGACGACCCTTTCAGTGCTGTAGATGCACATACTGGAACACATTTGTTCACGAAATGTATCTTGCAAGAATTGTCTGAAAAAACCGTAATCTATGCTACTCACCAACTAGAGTTTTTGGAAGCAGCAGACTATGTTTTGGTAGTTAAAGATGGTCAAATTGCTCAAGCCGGCACTTATGAGATTTTGATTAAAGATCCTAATGGCGAACTTGTCAGACAAATGACTGCACATAGAAAATCTCTACACCAAGTTCACAGCAGTCGACCTGATTCTTTAAGCAACACCACAACTACTGGCCTCGTGGATAATGGAATTACTGAAAGAGTATTGGATATTGAAGAAACGGAAAAAGCTTCAACCAATGACCAGATTACTGTCAAAGATATCCGAGGGGAAGAAGAAGAAACACACAATGGTCGGGTAAAATGGAGTGTATATTCTACATTTGTGACTTGTGCTTTTGGAGGTCTACTGCTTCCAGTGATCCTTCTCTGTCACGTCCTCTTCCAAGTGCTCCAGATGGCAAGCAACTACTGGATTGCTTGGGCAGCAGGGAAGGAAAACACTGTCACCAGAGGAAACATGTTGTGGATTTTCGCTCTTTTATCTGGTGGAAGCTCTGTCTTCATCTTGGGAAGGGCGGTCTTCCTTTCAGTTATTACTATTGAAACTTCCCAGAATCTCTTTGTTGGGATGATTTCTTCAGTTTTCCGAGCGCCTATGGCATTTTTCGACTCTACACCTTCTAGTCGAATCCTCACTAGGTCTTCCACAGATCAAAGCACAGTCGACACAGATATTACATTCAGGTTAACGGGGCTGGTATTTGCACTCATTCAACTACTATATATGCACTATCATCCTTATGTGTCTCGTGGCCTGAAGTACTATATTACCACTGCTAGAGAACTGGCCAGAATGGTTGCAACTCAAAGGGCTCCAATACTGCATCATTTTTCAGAATCAATTGTGGGAGCTACAACGATTCGTTGTTTCAATCAACAAAATCGCTTCTTGACAAAAGCAATGAATGAAATTGATGACTTTTCTCGAGTAGCCTTTCATAACAATGCAACAATGGAATGGCTATCCGTGAGAATAAATTTTCTCTTCAATGTTGCCTTCCTTGTAGTGCTTATTGTCTTGGTAAACCTGCCCAAGTCTGTCATTGACCCTTATTTAGCAGGAGTGGCTGCATCATATGGTCTAAACCTTAGTGTCCTGCAGGCTTGGGTGATTTGGAATCTGTGCAATGTTGAAAACAAAATGATATCTGTTGAGAGAATTCTTCAATTCACTGGATTACAAAGTGAGGCACCACTTGTGATCGAAGCTTCTAGGCCAAACTCTGAATGGCCATCTGAAGGACAAATTGAATTTCAAAACGTGCAAGTTCAATATCAGCCTGAGGGTCCAATGGTACTGAAAGGGATCACTTGCACATTCTCTAAAAGGATGAAAATTGGAGTGGTGAGAAGAACAGGAAGTGGAAAGTCCACTATGATCCAAGCCTTGTTTAGAGTTGTTGAGCTCTCAGGAGGGAAAATTCTCATTGCTGAACAAGACATTTCTAAAATAGGCCTGCAGGATTTAAGGTCAAGTTTAGGCATTATCCCACAGGACCCAACTTTATTTCAAGGAAGCTTGAGGAATAATCTGGATCCTCTGCAGCAACATTCTGATCCAGAAATACTGGAGGTTGTGAAGAAATGTCGACTTGGGAACTTAGTGAGGCAAGACCAAATGCTCCTGGATGCACCTGGTGGTAGAACTGTTAGAAGGGCTTTTGAGTTTGGAAGAACCTATGTAGTCCGACCTAAAGCAAACACCAGGCCACCCTGGTTCCAGCTCTTGGAAACTCTCCCCCTTCCTAATATTAAATGGATTTGTCCAACCGCTCCTATTGAACCAATTTCAGGTTTTGGTGGTTTTCCTTCCATTGCTTGTGATGCTGTGGTTCCTTATAAGTTTGGTGAGAAATCTTCACGAGCTGTGACTGCAACTGGCTTTCAGGACGTGACCTTCAAATCCTATAATGGGTATGTGGTTCCTTATTTTGTGTTTAGGTTCTTGCAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

845

Amino Acids

94.15

Weight (kDa)

8.06

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	26 - 156	5.2e-15	ABC transporter
ABC_membrane	PF00664	315 - 434	5.2e-09	ABC transporter transmembrane region
ABC_membrane	PF00664	447 - 534	1.8e-08	ABC transporter transmembrane region
ABC_tran	PF00005	627 - 728	5.9e-10	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2421
Acc36I	ACCTGC	1 cut(s)	1617
AccB1I	GGYRCC	1 cut(s)	1771
AccB7I	CCANNNNNTGG	1 cut(s)	2308
AccBSI	CCGCTC	1 cut(s)	2354
AccI	GTMKAC	6 cut(s)	151, 429, 718, 925, 1245, 2170
AciI	CCGC	3 cut(s)	111, 1097, 2352
AclWI	GGATC	9 cut(s)	226, 239, 644, 934, 1895, 1954, 2111, 2124, 2132
AcoI	YGGCCR	2 cut(s)	1368, 1811
AcsI	RAATTY	5 cut(s)	171, 1558, 1740, 1832, 2001
AcuI	CTGAAG	3 cut(s)	1143, 1358, 1839
AdeI	CACNNNGTG	1 cut(s)	2219
AfaI	GTAC	2 cut(s)	1343, 1878
AfiI	CCNNNNNNNGG	4 cut(s)	1820, 2308, 2372, 2493
AflIII	ACRYGT	2 cut(s)	40, 1038
AjiI	CACGTC	2 cut(s)	955, 2473
AjnI	CCWGG	5 cut(s)	324, 2205, 2215, 2285, 2294
AluBI	AGCT	9 cut(s)	425, 809, 1074, 1433, 1790, 1987, 2100, 2305, 2447
AluI	AGCT	9 cut(s)	425, 809, 1074, 1433, 1790, 1987, 2100, 2305, 2447
Alw21I	GWGCWC	2 cut(s)	972, 1989
Alw26I	GTCTC	2 cut(s)	43, 1332
AlwI	GGATC	9 cut(s)	226, 239, 644, 934, 1895, 1954, 2111, 2124, 2132
Ama87I	CYCGRG	2 cut(s)	124, 1506
AoxI	GGCC	9 cut(s)	341, 394, 751, 1333, 1368, 1796, 1811, 2035, 2288
ApeKI	GCWGC	4 cut(s)	578, 1004, 1649, 2125
ApoI	RAATTY	5 cut(s)	171, 1558, 1740, 1832, 2001
AspLEI	GCGC	1 cut(s)	1174
AspS9I	GGNCC	3 cut(s)	322, 1868, 2077
AsuHPI	GGTGA	7 cut(s)	170, 289, 548, 1018, 1702, 1939, 2441
AvaI	CYCGRG	2 cut(s)	124, 1506
AvaII	GGWCC	3 cut(s)	322, 1868, 2077
AxyI	CCTNAGG	1 cut(s)	1863
BalI	TGGCCA	2 cut(s)	1370, 1813
BamHI	GGATCC	2 cut(s)	231, 2116
BanI	GGYRCC	1 cut(s)	1771
BanII	GRGCYC	2 cut(s)	1396, 1989
BauI	CACGAG	3 cut(s)	755, 1329, 2442
BbsI	GAAGAC	3 cut(s)	1072, 1093, 1215
Bbv12I	GWGCWC	2 cut(s)	972, 1989
BbvI	GCAGC	4 cut(s)	590, 1016, 1636, 2137
BccI	CCATC	3 cut(s)	599, 970, 1822
BciT130I	CCWGG	5 cut(s)	326, 2207, 2217, 2287, 2296
BcoDI	GTCTC	2 cut(s)	43, 1332
BfaI	CTAG	6 cut(s)	135, 563, 1203, 1218, 1359, 1794
BfmI	CTRYAG	4 cut(s)	474, 1679, 2039, 2123
BfoI	RGCGCY	1 cut(s)	1175
BfuAI	ACCTGC	1 cut(s)	1617
BisI	GCNGC	4 cut(s)	579, 1005, 1650, 2126
BlsI	GCNGC	4 cut(s)	580, 1006, 1651, 2127
BmcAI	AGTACT	1 cut(s)	1343
Bme1390I	CCNGG	5 cut(s)	326, 2207, 2217, 2287, 2296
Bme18I	GGWCC	3 cut(s)	322, 1868, 2077
BmeT110I	CYCGRG	2 cut(s)	124, 1506
BmgBI	CACGTC	2 cut(s)	955, 2473
BmgT120I	GGNCC	3 cut(s)	322, 1868, 2077
BmrFI	CCNGG	5 cut(s)	326, 2207, 2217, 2287, 2296
BmsI	GCATC	7 cut(s)	83, 427, 469, 1414, 1661, 2200, 2395
BpiI	GAAGAC	3 cut(s)	1072, 1093, 1215
BpmI	CTGGAG	3 cut(s)	30, 956, 2171
BpuEI	CTTGAG	2 cut(s)	603, 2122
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	4 cut(s)	227, 318, 844, 2294
Bsc4I	CCNNNNNNNGG	4 cut(s)	1820, 2308, 2372, 2493
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	9 cut(s)	244, 493, 754, 935, 995, 1371, 1759, 2154, 2464
Bse21I	CCTNAGG	1 cut(s)	1863
Bse3DI	GCAATG	5 cut(s)	40, 1488, 1714, 2007, 2394
BseBI	CCWGG	5 cut(s)	326, 2207, 2217, 2287, 2296
BseDI	CCNNGG	4 cut(s)	227, 318, 844, 2294
BseGI	GGATG	5 cut(s)	98, 1155, 1315, 1917, 2215
BseLI	CCNNNNNNNGG	4 cut(s)	1820, 2308, 2372, 2493
BseMI	GCAATG	5 cut(s)	40, 1488, 1714, 2007, 2394
BseMII	CTCAG	2 cut(s)	1854, 2004
BseNI	ACTGG	9 cut(s)	244, 493, 754, 935, 995, 1371, 1759, 2154, 2464
BseXI	GCAGC	4 cut(s)	590, 1016, 1636, 2137
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	9 cut(s)	343, 396, 753, 1335, 1370, 1798, 1813, 2037, 2290
BshNI	GGYRCC	1 cut(s)	1771
BsiHKAI	GWGCWC	2 cut(s)	972, 1989
BsiHKCI	CYCGRG	2 cut(s)	124, 1506
BsiSI	CCGG	1 cut(s)	624
BslFI	GGGAC	2 cut(s)	200, 266
BslI	CCNNNNNNNGG	4 cut(s)	1820, 2308, 2372, 2493
BsmAI	GTCTC	2 cut(s)	43, 1332
BsmFI	GGGAC	2 cut(s)	200, 266
BsnI	GGCC	9 cut(s)	343, 396, 753, 1335, 1370, 1798, 1813, 2037, 2290
Bso31I	GGTCTC	1 cut(s)	43
BsoBI	CYCGRG	2 cut(s)	124, 1506
Bsp1286I	GDGCHC	3 cut(s)	972, 1396, 1989
Bsp143I	GATC	9 cut(s)	231, 649, 939, 1231, 1782, 1887, 1959, 2116, 2137
Bsp19I	CCATGG	2 cut(s)	227, 318
BspACI	CCGC	3 cut(s)	111, 1097, 2352
BspANI	GGCC	9 cut(s)	343, 396, 753, 1335, 1370, 1798, 1813, 2037, 2290
BspCNI	CTCAG	2 cut(s)	1855, 2003
BspMAI	CTGCAG	3 cut(s)	1683, 2043, 2127
BspMI	ACCTGC	1 cut(s)	1617
BspPI	GGATC	9 cut(s)	226, 239, 644, 934, 1895, 1954, 2111, 2124, 2132
BspT107I	GGYRCC	1 cut(s)	1771
BspTNI	GGTCTC	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	2354
BsrDI	GCAATG	5 cut(s)	40, 1488, 1714, 2007, 2394
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	9 cut(s)	244, 493, 754, 935, 995, 1371, 1759, 2154, 2464
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	4 cut(s)	227, 318, 844, 2294
BssMI	GATC	9 cut(s)	231, 649, 939, 1231, 1782, 1887, 1959, 2116, 2137
BssNAI	GTATAC	1 cut(s)	152
BssSI	CACGAG	3 cut(s)	755, 1329, 2442
BssT1I	CCWWGG	2 cut(s)	227, 318
Bst1107I	GTATAC	1 cut(s)	152
Bst2BI	CACGAG	3 cut(s)	755, 1329, 2442
Bst2UI	CCWGG	5 cut(s)	326, 2207, 2217, 2287, 2296
Bst4CI	ACNGT	7 cut(s)	64, 361, 541, 832, 1024, 1243, 2230
Bst6I	CTCTTC	2 cut(s)	965, 1571
BstC8I	GCNNGC	7 cut(s)	31, 183, 625, 982, 1683, 2039, 2532
BstDEI	CTNAG	5 cut(s)	386, 1670, 1863, 1990, 2182
BstDSI	CCRYGG	2 cut(s)	227, 318
BstF5I	GGATG	5 cut(s)	98, 1155, 1315, 1917, 2215
BstH2I	RGCGCY	1 cut(s)	1175
BstHHI	GCGC	1 cut(s)	1174
BstKTI	GATC	9 cut(s)	234, 652, 942, 1234, 1785, 1890, 1962, 2119, 2140
BstMAI	GTCTC	2 cut(s)	43, 1332
BstMBI	GATC	9 cut(s)	231, 649, 939, 1231, 1782, 1887, 1959, 2116, 2137
BstMWI	GCNNNNNNNGC	8 cut(s)	135, 144, 479, 1004, 1178, 1646, 2405, 2453
BstNI	CCWGG	5 cut(s)	326, 2207, 2217, 2287, 2296
BstNSI	RCATGY	2 cut(s)	44, 1042
BstSCI	CCNGG	5 cut(s)	324, 2205, 2215, 2285, 2294
BstSFI	CTRYAG	4 cut(s)	474, 1679, 2039, 2123
BstV1I	GCAGC	4 cut(s)	590, 1016, 1636, 2137
BstV2I	GAAGAC	3 cut(s)	1072, 1093, 1215
BstX2I	RGATCY	3 cut(s)	231, 649, 2116
BstYI	RGATCY	3 cut(s)	231, 649, 2116
BstZ17I	GTATAC	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	1863
BsuRI	GGCC	9 cut(s)	343, 396, 753, 1335, 1370, 1798, 1813, 2037, 2290
BtgI	CCRYGG	2 cut(s)	227, 318
BtrI	CACGTC	2 cut(s)	955, 2473
BtsCI	GGATG	5 cut(s)	98, 1155, 1315, 1917, 2215
BtsI	GCAGTG	1 cut(s)	1353
BtsIMutI	CAGTG	5 cut(s)	475, 942, 1020, 1353, 1752
BveI	ACCTGC	1 cut(s)	1617
Cac8I	GCNNGC	7 cut(s)	31, 183, 625, 982, 1683, 2039, 2532
CfoI	GCGC	1 cut(s)	1174
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	3 cut(s)	322, 1868, 2077
CsiI	ACCWGGT	1 cut(s)	2215
Csp6I	GTAC	2 cut(s)	1342, 1877
CviAII	CATG	4 cut(s)	41, 228, 319, 1039
CviQI	GTAC	2 cut(s)	1342, 1877
DdeI	CTNAG	5 cut(s)	386, 1670, 1863, 1990, 2182
DpnI	GATC	9 cut(s)	233, 651, 941, 1233, 1784, 1889, 1961, 2118, 2139
DpnII	GATC	9 cut(s)	231, 649, 939, 1231, 1782, 1887, 1959, 2116, 2137
DraIII	CACNNNGTG	1 cut(s)	2219
EaeI	YGGCCR	2 cut(s)	1368, 1811
Eam1104I	CTCTTC	2 cut(s)	965, 1571
EarI	CTCTTC	2 cut(s)	965, 1571
Ecl136II	GAGCTC	1 cut(s)	1987
Eco130I	CCWWGG	2 cut(s)	227, 318
Eco147I	AGGCCT	1 cut(s)	2037
Eco24I	GRGCYC	2 cut(s)	1396, 1989
Eco31I	GGTCTC	1 cut(s)	43
Eco32I	GATATC	2 cut(s)	841, 1728
Eco47I	GGWCC	3 cut(s)	322, 1868, 2077
Eco53kI	GAGCTC	1 cut(s)	1987
Eco57I	CTGAAG	3 cut(s)	1143, 1358, 1839
Eco81I	CCTNAGG	1 cut(s)	1863
Eco88I	CYCGRG	2 cut(s)	124, 1506
EcoICRI	GAGCTC	1 cut(s)	1987
EcoO109I	RGGNCCY	1 cut(s)	2077
EcoRI	GAATTC	1 cut(s)	1740
EcoRII	CCWGG	5 cut(s)	324, 2205, 2215, 2285, 2294
EcoRV	GATATC	2 cut(s)	841, 1728
EcoT14I	CCWWGG	2 cut(s)	227, 318
EcoT38I	GRGCYC	2 cut(s)	1396, 1989
ErhI	CCWWGG	2 cut(s)	227, 318
FaeI	CATG	4 cut(s)	44, 231, 322, 1042
FaqI	GGGAC	2 cut(s)	200, 266
FatI	CATG	4 cut(s)	40, 227, 318, 1038
FauNDI	CATATG	1 cut(s)	1657
FblI	GTMKAC	6 cut(s)	151, 429, 718, 925, 1245, 2170
Fnu4HI	GCNGC	4 cut(s)	579, 1005, 1650, 2126
FokI	GGATG	5 cut(s)	105, 1162, 1302, 1924, 2222
FriOI	GRGCYC	2 cut(s)	1396, 1989
Fsp4HI	GCNGC	4 cut(s)	579, 1005, 1650, 2126
FspBI	CTAG	6 cut(s)	135, 563, 1203, 1218, 1359, 1794
GlaI	GCGC	1 cut(s)	1173
GluI	GCNGC	4 cut(s)	579, 1005, 1650, 2126
GsuI	CTGGAG	3 cut(s)	30, 956, 2171
HaeII	RGCGCY	1 cut(s)	1175
HaeIII	GGCC	9 cut(s)	343, 396, 753, 1335, 1370, 1798, 1813, 2037, 2290
HapII	CCGG	1 cut(s)	624
HhaI	GCGC	1 cut(s)	1174
Hin1II	CATG	4 cut(s)	44, 231, 322, 1042
Hin6I	GCGC	1 cut(s)	1172
HinP1I	GCGC	1 cut(s)	1172
HincII	GTYRAC	4 cut(s)	719, 1246, 1269, 2171
HindII	GTYRAC	4 cut(s)	719, 1246, 1269, 2171
HindIII	AAGCTT	3 cut(s)	807, 1788, 2098
HpaI	GTTAAC	1 cut(s)	1269
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	7 cut(s)	170, 289, 548, 1018, 1702, 1939, 2441
Hpy188I	TCNGA	9 cut(s)	532, 671, 845, 1169, 1417, 1807, 1819, 2137, 2270
HpyCH4III	ACNGT	7 cut(s)	64, 361, 541, 832, 1024, 1243, 2230
HpyCH4IV	ACGT	4 cut(s)	213, 954, 1842, 2472
HpyF10VI	GCNNNNNNNGC	8 cut(s)	135, 144, 479, 1004, 1178, 1646, 2405, 2453
HpyF3I	CTNAG	5 cut(s)	386, 1670, 1863, 1990, 2182
HpySE526I	ACGT	4 cut(s)	213, 954, 1842, 2472
Hsp92II	CATG	4 cut(s)	44, 231, 322, 1042
HspAI	GCGC	1 cut(s)	1172
KroI	GCCGGC	1 cut(s)	623
KroNI	GCCGGC	1 cut(s)	625
KspAI	GTTAAC	1 cut(s)	1269
Kzo9I	GATC	9 cut(s)	231, 649, 939, 1231, 1782, 1887, 1959, 2116, 2137
LmnI	GCTCC	5 cut(s)	975, 1399, 1430, 2208, 2359
Lsp1109I	GCAGC	4 cut(s)	590, 1016, 1636, 2137
LweI	GCATC	7 cut(s)	83, 427, 469, 1414, 1661, 2200, 2395
MabI	ACCWGGT	1 cut(s)	2215
MaeI	CTAG	6 cut(s)	135, 563, 1203, 1218, 1359, 1794
MaeII	ACGT	4 cut(s)	213, 954, 1842, 2472
MaeIII	GTNAC	5 cut(s)	904, 950, 1024, 2449, 2473
MalI	GATC	9 cut(s)	233, 651, 941, 1233, 1784, 1889, 1961, 2118, 2139
MbiI	CCGCTC	1 cut(s)	2354
MboI	GATC	9 cut(s)	231, 649, 939, 1231, 1782, 1887, 1959, 2116, 2137
MfeI	CAATTG	1 cut(s)	1422
MflI	RGATCY	3 cut(s)	231, 649, 2116
MhlI	GDGCHC	3 cut(s)	972, 1396, 1989
MlsI	TGGCCA	2 cut(s)	1370, 1813
MluNI	TGGCCA	2 cut(s)	1370, 1813
MlyI	GAGTC	2 cut(s)	14, 1184
MmeI	TCCRAC	3 cut(s)	46, 2293, 2372
Mox20I	TGGCCA	2 cut(s)	1370, 1813
MroNI	GCCGGC	1 cut(s)	623
MscI	TGGCCA	2 cut(s)	1370, 1813
MseI	TTAA	7 cut(s)	380, 600, 645, 731, 1268, 2048, 2334
MslI	CAYNNNNRTG	2 cut(s)	1320, 1524
Msp20I	TGGCCA	2 cut(s)	1370, 1813
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	5 cut(s)	326, 2207, 2217, 2287, 2296
MunI	CAATTG	1 cut(s)	1422
MvaI	CCWGG	5 cut(s)	326, 2207, 2217, 2287, 2296
MwoI	GCNNNNNNNGC	8 cut(s)	135, 144, 479, 1004, 1178, 1646, 2405, 2453
NaeI	GCCGGC	1 cut(s)	625
NcoI	CCATGG	2 cut(s)	227, 318
NdeI	CATATG	1 cut(s)	1657
NdeII	GATC	9 cut(s)	231, 649, 939, 1231, 1782, 1887, 1959, 2116, 2137
NgoMIV	GCCGGC	1 cut(s)	623
NlaIII	CATG	4 cut(s)	44, 231, 322, 1042
NmuCI	GTSAC	5 cut(s)	904, 950, 1024, 2449, 2473
NspI	RCATGY	2 cut(s)	44, 1042
PaeR7I	CTCGAG	1 cut(s)	1506
PceI	AGGCCT	1 cut(s)	2037
PciI	ACATGT	2 cut(s)	40, 1038
PdiI	GCCGGC	1 cut(s)	625
PfeI	GAWTC	8 cut(s)	163, 409, 725, 1135, 1209, 1418, 1441, 1699
PflMI	CCANNNNNTGG	1 cut(s)	2308
PfoI	TCCNGGA	1 cut(s)	2205
PkrI	GCNGC	4 cut(s)	580, 1006, 1651, 2127
PleI	GAGTC	2 cut(s)	13, 1184
PpsI	GAGTC	2 cut(s)	13, 1184
PpuMI	RGGWCCY	1 cut(s)	2077
PscI	ACATGT	2 cut(s)	40, 1038
PsiI	TTATAA	1 cut(s)	2421
Psp124BI	GAGCTC	1 cut(s)	1989
Psp5II	RGGWCCY	1 cut(s)	2077
Psp6I	CCWGG	5 cut(s)	324, 2205, 2215, 2285, 2294
PspGI	CCWGG	5 cut(s)	324, 2205, 2215, 2285, 2294
PspPI	GGNCC	3 cut(s)	322, 1868, 2077
PspPPI	RGGWCCY	1 cut(s)	2077
PstI	CTGCAG	3 cut(s)	1683, 2043, 2127
PsuI	RGATCY	3 cut(s)	231, 649, 2116
RsaI	GTAC	2 cut(s)	1343, 1878
RsaNI	GTAC	2 cut(s)	1342, 1877
RseI	CAYNNNNRTG	2 cut(s)	1320, 1524
SacI	GAGCTC	1 cut(s)	1989
SalI	GTCGAC	3 cut(s)	717, 1244, 2169
SaqAI	TTAA	7 cut(s)	380, 600, 645, 731, 1268, 2048, 2334
SatI	GCNGC	4 cut(s)	579, 1005, 1650, 2126
Sau3AI	GATC	9 cut(s)	231, 649, 939, 1231, 1782, 1887, 1959, 2116, 2137
Sau96I	GGNCC	3 cut(s)	322, 1868, 2077
SbfI	CCTGCAGG	2 cut(s)	1683, 2043
ScaI	AGTACT	1 cut(s)	1343
SchI	GAGTC	2 cut(s)	14, 1184
ScrFI	CCNGG	5 cut(s)	326, 2207, 2217, 2287, 2296
SdaI	CCTGCAGG	2 cut(s)	1683, 2043
SduI	GDGCHC	3 cut(s)	972, 1396, 1989
SexAI	ACCWGGT	1 cut(s)	2215
SfaNI	GCATC	7 cut(s)	83, 427, 469, 1414, 1661, 2200, 2395
SfcI	CTRYAG	4 cut(s)	474, 1679, 2039, 2123
Sfr274I	CTCGAG	1 cut(s)	1506
SinI	GGWCC	3 cut(s)	322, 1868, 2077
SlaI	CTCGAG	1 cut(s)	1506
SmiMI	CAYNNNNRTG	2 cut(s)	1320, 1524
SmlI	CTYRAG	3 cut(s)	618, 1506, 2101
SmoI	CTYRAG	3 cut(s)	618, 1506, 2101
Sse8387I	CCTGCAGG	2 cut(s)	1683, 2043
SseBI	AGGCCT	1 cut(s)	2037
SsiI	CCGC	3 cut(s)	111, 1097, 2352
SspI	AATATT	1 cut(s)	2332
SspMI	CTAG	6 cut(s)	135, 563, 1203, 1218, 1359, 1794
SstI	GAGCTC	1 cut(s)	1989
StuI	AGGCCT	1 cut(s)	2037
StyD4I	CCNGG	5 cut(s)	324, 2205, 2215, 2285, 2294
StyI	CCWWGG	2 cut(s)	227, 318
TaaI	ACNGT	7 cut(s)	64, 361, 541, 832, 1024, 1243, 2230
TaiI	ACGT	4 cut(s)	216, 957, 1845, 2475
TaqI	TCGA	7 cut(s)	718, 1188, 1207, 1245, 1507, 1785, 2170
TatI	WGTACW	1 cut(s)	1341
TfiI	GAWTC	8 cut(s)	163, 409, 725, 1135, 1209, 1418, 1441, 1699
Tru1I	TTAA	7 cut(s)	380, 600, 645, 731, 1268, 2048, 2334
Tru9I	TTAA	7 cut(s)	380, 600, 645, 731, 1268, 2048, 2334
TscAI	CASTG	5 cut(s)	475, 942, 1027, 1360, 1759
TseFI	GTSAC	5 cut(s)	904, 950, 1024, 2449, 2473
TseI	GCWGC	4 cut(s)	578, 1004, 1649, 2125
Tsp45I	GTSAC	5 cut(s)	904, 950, 1024, 2449, 2473
TspDTI	ATGAA	6 cut(s)	51, 1072, 1499, 1503, 1508, 1928
TspGWI	ACGGA	3 cut(s)	363, 815, 1537
TspRI	CASTG	5 cut(s)	475, 942, 1027, 1360, 1759
Van91I	CCANNNNNTGG	1 cut(s)	2308
VpaK11BI	GGWCC	3 cut(s)	322, 1868, 2077
XapI	RAATTY	5 cut(s)	171, 1558, 1740, 1832, 2001
XceI	RCATGY	2 cut(s)	44, 1042
XcmI	CCANNNNNNNNNTGG	2 cut(s)	225, 1806
XhoI	CTCGAG	1 cut(s)	1506
XmiI	GTMKAC	6 cut(s)	151, 429, 718, 925, 1245, 2170
XspI	CTAG	6 cut(s)	135, 563, 1203, 1218, 1359, 1794
ZrmI	AGTACT	1 cut(s)	1343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.