Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

48028180 .. 48028998

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG312300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAAGTACATAGTTGGAAAGGATGACAGCTCAAACATGTATGGAGAGAAGCTTGCCTTCGTATTCTTTTTTGCAATGACTTTGGACTCAATTACTCAAAGACAAATGTCTTTTGGTGCTCGGCAAATTGGTCTACAAGTCAGAGCAGCTTTGACCACCTTAATCTACAAGAAGTGCATCTCGATTAAGTACTCTGGTCCAAGCAATGGTGAAATCATAAACTTAATCAACATGGACGTAGAAGTGGTTGGAGAATTCTTCTCTTCTATTCATGGAGCTTGGGTGCTTCCCCTTCAAGTGTTGCTGGCATTGGTTATGTTGTACAGAAATCTCGGTGCTGCCCCTTCTCTGGCTGCCTTTCTGGCCACAGTAGCAGTAGTGGTATGCAACACACCATTGGCTCGAAGGCAACAAATTCTCCAATCAAAAATCATGGAAGCAAAGGATTCAAGAATCAAGAGAACCTCAGAGACTCTAAAGAGCATGAGAGTCATAAAATTCAATTCATGGGATCCTAGTTTCTTAGAGAAGCTACTTCAACTCAGAGAAACTGAGAAAAGTTGGTTAAGGAGATCTTTGTACACTAAGGCGGCAGTGGTATTTCTCTTCTGGACTTCACCAACCATAGTTTCAGTGGTTACTTTTGGTGTTTGTATCATGATGAAAACACCATTAGAACCATATACAGTCCTGTCAGCTTTAGCCACTTTCAGAATCCTTACCGAGCCAATTTACAACCTTCCAGAGTTTATCTCAACGATTATCCAAACAAAGGTTTCGGTTAAGCGAATTCAAGAATTCATCAGATTAATTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

272

Amino Acids

30.87

Weight (kDa)

9.84

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	8 - 243	2.4e-19	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	1 cut(s)	590
AclWI	GGATC	2 cut(s)	506, 519
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	5 cut(s)	254, 414, 497, 789, 797
AfaI	GTAC	4 cut(s)	8, 191, 323, 581
AfiI	CCNNNNNNNGG	3 cut(s)	206, 349, 772
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	5 cut(s)	296, 450, 502, 539, 794
AjuI	GAANNNNNNNTTGG	2 cut(s)	613, 645
AluBI	AGCT	6 cut(s)	30, 52, 149, 278, 532, 698
AluI	AGCT	6 cut(s)	30, 52, 149, 278, 532, 698
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	506, 519
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	3 cut(s)	146, 338, 353
ApoI	RAATTY	5 cut(s)	254, 414, 497, 789, 797
AseI	ATTAAT	1 cut(s)	809
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	221, 609
AvaII	GGWCC	1 cut(s)	197
BalI	TGGCCA	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	158, 325, 340
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	1 cut(s)	516
BglI	GCCNNNNNGGC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	572
BisI	GCNGC	4 cut(s)	147, 339, 354, 591
BlsI	GCNGC	4 cut(s)	148, 340, 355, 592
BmcAI	AGTACT	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	513
BmsI	GCATC	1 cut(s)	186
BoxI	GACNNNNGTC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	737, 769
BsaXI	ACNNNNNCTCC	4 cut(s)	267, 297, 402, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 349, 772
Bse3DI	GCAATG	2 cut(s)	81, 211
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	3 cut(s)	206, 349, 772
BseMI	GCAATG	2 cut(s)	81, 211
BseMII	CTCAG	3 cut(s)	480, 543, 556
BseXI	GCAGC	3 cut(s)	158, 325, 340
BshFI	GGCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	206, 349, 772
BsmAI	GTCTC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp1407I	TGTACA	2 cut(s)	321, 579
Bsp143I	GATC	2 cut(s)	511, 572
BspACI	CCGC	1 cut(s)	590
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	3 cut(s)	479, 544, 555
BspHI	TCATGA	1 cut(s)	657
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	2 cut(s)	506, 519
BsrDI	GCAATG	2 cut(s)	81, 211
BsrGI	TGTACA	2 cut(s)	321, 579
BssMI	GATC	2 cut(s)	511, 572
Bst4CI	ACNGT	2 cut(s)	370, 688
Bst6I	CTCTTC	2 cut(s)	268, 611
BstAUI	TGTACA	2 cut(s)	321, 579
BstC8I	GCNNGC	2 cut(s)	54, 306
BstDEI	CTNAG	5 cut(s)	466, 523, 542, 552, 585
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	514, 575
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	2 cut(s)	511, 572
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 371
BstNSI	RCATGY	1 cut(s)	40
BstPAI	GACNNNNGTC	1 cut(s)	106
BstV1I	GCAGC	3 cut(s)	158, 325, 340
BstX2I	RGATCY	2 cut(s)	511, 572
BstYI	RGATCY	2 cut(s)	511, 572
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	2 cut(s)	600, 639
Cac8I	GCNNGC	2 cut(s)	54, 306
CciI	TCATGA	1 cut(s)	657
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	4 cut(s)	7, 190, 322, 580
CviAII	CATG	7 cut(s)	37, 232, 272, 433, 484, 507, 658
CviQI	GTAC	4 cut(s)	7, 190, 322, 580
DdeI	CTNAG	5 cut(s)	466, 523, 542, 552, 585
DpnI	GATC	2 cut(s)	513, 574
DpnII	GATC	2 cut(s)	511, 572
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	268, 611
EarI	CTCTTC	2 cut(s)	268, 611
Eco47I	GGWCC	1 cut(s)	197
EcoRI	GAATTC	3 cut(s)	254, 789, 797
FaeI	CATG	7 cut(s)	40, 235, 275, 436, 487, 510, 661
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 559, 591
FatI	CATG	7 cut(s)	36, 231, 271, 432, 483, 506, 657
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	4 cut(s)	147, 339, 354, 591
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	4 cut(s)	147, 339, 354, 591
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	4 cut(s)	147, 339, 354, 591
HaeIII	GGCC	1 cut(s)	365
Hin1II	CATG	7 cut(s)	40, 235, 275, 436, 487, 510, 661
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	6 cut(s)	86, 446, 453, 472, 489, 714
HphI	GGTGA	2 cut(s)	221, 609
Hpy166II	GTNNAC	2 cut(s)	134, 582
Hpy188I	TCNGA	5 cut(s)	143, 469, 545, 713, 806
Hpy188III	TCNNGA	7 cut(s)	181, 450, 457, 610, 658, 743, 794
Hpy8I	GTNNAC	2 cut(s)	134, 582
HpyAV	CCTTC	5 cut(s)	67, 302, 354, 399, 749
HpyCH4III	ACNGT	2 cut(s)	370, 688
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	3 cut(s)	74, 177, 387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 371
HpyF3I	CTNAG	5 cut(s)	466, 523, 542, 552, 585
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	7 cut(s)	40, 235, 275, 436, 487, 510, 661
Kzo9I	GATC	2 cut(s)	511, 572
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	7 cut(s)	180, 290, 335, 347, 595, 704, 756
Lsp1109I	GCAGC	3 cut(s)	158, 325, 340
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	2 cut(s)	513, 574
MboI	GATC	2 cut(s)	511, 572
MboII	GAAGA	3 cut(s)	250, 255, 598
MflI	RGATCY	2 cut(s)	511, 572
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	365
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	3 cut(s)	80, 466, 498
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	1 cut(s)	475
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	6 cut(s)	161, 186, 224, 566, 783, 809
Msp20I	TGGCCA	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	362, 371
NdeII	GATC	2 cut(s)	511, 572
NlaIII	CATG	7 cut(s)	40, 235, 275, 436, 487, 510, 661
NlaIV	GGNNCC	1 cut(s)	513
NmeAIII	GCCGAG	1 cut(s)	100
NspI	RCATGY	1 cut(s)	40
PagI	TCATGA	1 cut(s)	657
PciI	ACATGT	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	446, 453, 714
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	148, 340, 355, 592
PleI	GAGTC	3 cut(s)	80, 466, 497
PpsI	GAGTC	3 cut(s)	80, 466, 497
PscI	ACATGT	1 cut(s)	36
PshAI	GACNNNNGTC	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	809
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	511, 572
RsaI	GTAC	4 cut(s)	8, 191, 323, 581
RsaNI	GTAC	4 cut(s)	7, 190, 322, 580
SaqAI	TTAA	6 cut(s)	161, 186, 224, 566, 783, 809
SatI	GCNGC	4 cut(s)	147, 339, 354, 591
Sau3AI	GATC	2 cut(s)	511, 572
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	3 cut(s)	80, 466, 498
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	186
SinI	GGWCC	1 cut(s)	197
SsiI	CCGC	1 cut(s)	590
SspMI	CTAG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	370, 688
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	182, 403
TatI	WGTACW	4 cut(s)	6, 189, 321, 579
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	3 cut(s)	446, 453, 714
Tru1I	TTAA	6 cut(s)	161, 186, 224, 566, 783, 809
Tru9I	TTAA	6 cut(s)	161, 186, 224, 566, 783, 809
TscAI	CASTG	2 cut(s)	600, 639
TseI	GCWGC	3 cut(s)	146, 338, 353
TspDTI	ATGAA	5 cut(s)	17, 260, 495, 677, 790
TspRI	CASTG	2 cut(s)	600, 639
Van91I	CCANNNNNTGG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	197
VspI	ATTAAT	1 cut(s)	809
XapI	RAATTY	5 cut(s)	254, 414, 497, 789, 797
XceI	RCATGY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	1 cut(s)	516
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.