Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

54177024 .. 54178070

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAATCCAATATTTAAAAAGGGACTTGAGATCCAACAACTGGAACTATCTCATATACTGCCATCTATTCCTCCTTCAGTGAGAGCTGAGAGTGCTTCTTCTTTGCTCCAAGAGTCACTCGAACACCACTCTTCATTATTAGAAGCCATAGGGAGGGCTGTATGGAAATCACTAGCCATAAATGCAGTTTTTGCGGGTAACACAACTCACTCAGCTATCATTGAATCAATGTTGTTGCATCCTATACTGGTCCGATCCCTTCTTAATCAGAAACTTTGTGAACTATATAGTTGGAAAGTATGGAAGCGCAAACATGTATTATGGAGAGCAGCTTGCCTTCATATTCTTTCTTGCAATGACTTTAGATTCAATTACTCAAAGGCAACTGCCTTTCGTTCTTGGCAAATTGGTCTACAAGTAAGAGCAGCTTTGACCGCCTTAATCTACAAGAAGTGCATCTCGATTAAGTACTTTGGTCCAAGCAATAGTAAAATCATAAACTTAATCAACATGGATGTAGAGGTGGTTGGAGAATTCTTCTCTTCCATTAATGGAGTTTGGGTGCTTCTCCTTCAAGTTGTTCTGGCATTGGTCATGTTGTACATAAATCTTGGTGCTGCCCCTTCTCTGACAGTCTTTCTGACCACTGTAGTAGTAGTGGTATGCAACACACATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

226

Amino Acids

25.32

Weight (kDa)

9.4

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	412
AciI	CCGC	2 cut(s)	194, 435
AclWI	GGATC	2 cut(s)	25, 249
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	470, 602
AfiI	CCNNNNNNNGG	2 cut(s)	40, 153
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	224, 370, 575
AluBI	AGCT	4 cut(s)	86, 215, 332, 428
AluI	AGCT	4 cut(s)	86, 215, 332, 428
AlwI	GGATC	2 cut(s)	25, 249
ApeKI	GCWGC	3 cut(s)	329, 425, 617
ApoI	RAATTY	1 cut(s)	533
AseI	ATTAAT	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	250, 476
AvaII	GGWCC	2 cut(s)	250, 476
BbvI	GCAGC	3 cut(s)	341, 437, 604
BccI	CCATC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	648
BisI	GCNGC	3 cut(s)	330, 426, 618
BlsI	GCNGC	3 cut(s)	331, 427, 619
BmcAI	AGTACT	1 cut(s)	470
Bme18I	GGWCC	2 cut(s)	250, 476
BmgT120I	GGNCC	2 cut(s)	250, 476
BmsI	GCATC	2 cut(s)	247, 465
BpuEI	CTTGAG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 153
Bse1I	ACTGG	2 cut(s)	45, 252
Bse3DI	GCAATG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	238, 520
BseLI	CCNNNNNNNGG	2 cut(s)	40, 153
BseMI	GCAATG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	78, 225
BseNI	ACTGG	2 cut(s)	45, 252
BseXI	GCAGC	3 cut(s)	341, 437, 604
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	40, 153
BsmFI	GGGAC	1 cut(s)	36
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	2 cut(s)	30, 254
BspACI	CCGC	2 cut(s)	194, 435
BspCNI	CTCAG	2 cut(s)	79, 224
BspPI	GGATC	2 cut(s)	25, 249
BsrDI	GCAATG	1 cut(s)	361
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	45, 252
BssMI	GATC	2 cut(s)	30, 254
Bst4CI	ACNGT	2 cut(s)	634, 649
Bst6I	CTCTTC	2 cut(s)	136, 547
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	600
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	87, 211
BstF5I	GGATG	2 cut(s)	238, 520
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	2 cut(s)	33, 257
BstMBI	GATC	2 cut(s)	30, 254
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 182, 191, 434
BstNSI	RCATGY	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	648
BstV1I	GCAGC	3 cut(s)	341, 437, 604
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	238, 520
BtsIMutI	CAGTG	2 cut(s)	84, 645
Cac8I	GCNNGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	250, 476
Csp6I	GTAC	2 cut(s)	469, 601
CviAII	CATG	3 cut(s)	314, 511, 595
CviJI	RGCY	7 cut(s)	86, 146, 158, 176, 215, 332, 428
CviKI_1	RGCY	7 cut(s)	86, 146, 158, 176, 215, 332, 428
CviQI	GTAC	2 cut(s)	469, 601
DdeI	CTNAG	2 cut(s)	87, 211
DpnI	GATC	2 cut(s)	32, 256
DpnII	GATC	2 cut(s)	30, 254
DraI	TTTAAA	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	136, 547
EarI	CTCTTC	2 cut(s)	136, 547
Eco47I	GGWCC	2 cut(s)	250, 476
Eco57I	CTGAAG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	533
FaeI	CATG	3 cut(s)	317, 514, 598
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	3 cut(s)	313, 510, 594
FauI	CCCGC	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	330, 426, 618
FokI	GGATG	2 cut(s)	225, 527
Fsp4HI	GCNGC	3 cut(s)	330, 426, 618
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	3 cut(s)	330, 426, 618
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	317, 514, 598
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	4 cut(s)	4, 113, 224, 366
Hpy166II	GTNNAC	2 cut(s)	281, 413
Hpy188I	TCNGA	4 cut(s)	254, 270, 630, 642
Hpy188III	TCNNGA	1 cut(s)	460
Hpy8I	GTNNAC	2 cut(s)	281, 413
HpyAV	CCTTC	5 cut(s)	84, 269, 347, 581, 633
HpyCH4III	ACNGT	2 cut(s)	634, 649
HpyCH4V	TGCA	5 cut(s)	185, 238, 354, 456, 666
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 182, 191, 434
HpyF3I	CTNAG	2 cut(s)	87, 211
Hsp92II	CATG	3 cut(s)	317, 514, 598
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	30, 254
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	3 cut(s)	26, 233, 569
Lsp1109I	GCAGC	3 cut(s)	341, 437, 604
LweI	GCATC	2 cut(s)	247, 465
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	114, 197
MalI	GATC	2 cut(s)	32, 256
MboI	GATC	2 cut(s)	30, 254
MboII	GAAGA	4 cut(s)	90, 123, 529, 534
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	3 cut(s)	370, 405, 533
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	3 cut(s)	58, 272, 508
MnlI	CCTC	3 cut(s)	81, 147, 514
MseI	TTAA	6 cut(s)	15, 264, 440, 465, 503, 549
MwoI	GCNNNNNNNGC	4 cut(s)	92, 182, 191, 434
NdeII	GATC	2 cut(s)	30, 254
NlaIII	CATG	3 cut(s)	317, 514, 598
NmuCI	GTSAC	1 cut(s)	114
NspI	RCATGY	1 cut(s)	317
PciI	ACATGT	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	4, 224, 366
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	331, 427, 619
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PscI	ACATGT	1 cut(s)	313
PshBI	ATTAAT	1 cut(s)	549
PspPI	GGNCC	2 cut(s)	250, 476
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	2 cut(s)	470, 602
RsaNI	GTAC	2 cut(s)	469, 601
SaqAI	TTAA	6 cut(s)	15, 264, 440, 465, 503, 549
SatI	GCNGC	3 cut(s)	330, 426, 618
Sau3AI	GATC	2 cut(s)	30, 254
Sau96I	GGNCC	2 cut(s)	250, 476
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	1 cut(s)	122
SetI	ASST	5 cut(s)	88, 217, 334, 430, 525
SfaNI	GCATC	2 cut(s)	247, 465
SfcI	CTRYAG	1 cut(s)	648
SinI	GGWCC	2 cut(s)	250, 476
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	3 cut(s)	370, 405, 533
SsiI	CCGC	2 cut(s)	194, 435
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	634, 649
TaqI	TCGA	2 cut(s)	120, 461
TasI	AATT	3 cut(s)	370, 405, 533
TatI	WGTACW	2 cut(s)	468, 600
TfiI	GAWTC	3 cut(s)	4, 224, 366
Tru1I	TTAA	6 cut(s)	15, 264, 440, 465, 503, 549
Tru9I	TTAA	6 cut(s)	15, 264, 440, 465, 503, 549
TscAI	CASTG	2 cut(s)	84, 652
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	3 cut(s)	329, 425, 617
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	3 cut(s)	17, 123, 329
TspRI	CASTG	2 cut(s)	84, 652
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	250, 476
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	412
XspI	CTAG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.