Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

31864788 .. 31866269

Gene Structure 1482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31613

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGGGGCTATGCTTTAGTTTCTGCCTTTTTGGTGGCAAAGCTCATGGAGTGCCTCTCTCAGAGGCATTGGTTCTTTAGGGTGCAGCAGATAGGAGTAAGAATAAGAGCTGTACTGGTTGCCATGATCTATAATAAGGGGTTGACCCTGTCTTGCCAGTCGAAGCAGTGCCACACTAGTGGTGAGATTATCAATTTTATGACTGTTGATGTTGAGAGGATTGGTGACTTCACTTGGTTAGGAGAACCTTTTCTCCCTCACTCTCAGCCGCGTTGTCTCTCTCTCCCGACCTCTCGTTCCCTCTCTCTTCTTCTTCCCTCTGCCACCACCGGAAATCCCATCTCCGTCCACCACCTCTTGTCACCGCCACTACCACTCAATCCGGCACCCAAAACCGACCAAACTGGAGCCTCACCTTTCGACATGCATTGCCCACAGCCACTGTACACGACCACCACAGCCGCGACACCACTGCTCCTCCACTATCTTCAATTTTCGGCGATTTCCTCGCCCTTCCGCCACCATAGCTCTACTCAGCAAGCAACAAGGAGCAAAACCCAGAAGTCTCGACACCCACCAAAGCCGGAAAACGACGTACGAGCTTCGCTGGAACCCGTAGCTCTACCTGCCTACGTTCTCCTGTCTCCAGCTCGAATTGAGCTAAACCATCTCCGTAGTTGGAATCAGCACCTCTCCTTTGACCATAATCCCATGGCTCCGACCTCCGACTCCGATCAGAACCACCACACGCGTCGCTGCTGGCGTGTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

257

Amino Acids

28.88

Weight (kDa)

9.57

Isoelectric Point (pI)

64.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	634
AccB1I	GGYRCC	1 cut(s)	385
AccII	CGCG	3 cut(s)	271, 464, 751
AciI	CCGC	4 cut(s)	269, 365, 462, 517
AfaI	GTAC	3 cut(s)	114, 446, 597
AflIII	ACRYGT	1 cut(s)	749
AgsI	TTSAA	1 cut(s)	491
AhlI	ACTAGT	1 cut(s)	176
AleI	CACNNNNGTG	1 cut(s)	177
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	8 cut(s)	43, 110, 528, 602, 620, 650, 661, 771
AluI	AGCT	8 cut(s)	43, 110, 528, 602, 620, 650, 661, 771
Alw26I	GTCTC	3 cut(s)	281, 570, 648
AlwNI	CAGNNNCTG	1 cut(s)	442
ApeKI	GCWGC	2 cut(s)	85, 756
Asp700I	GAANNNNTTC	1 cut(s)	249
AsuHPI	GGTGA	4 cut(s)	194, 236, 354, 405
BanI	GGYRCC	1 cut(s)	385
BbvI	GCAGC	2 cut(s)	97, 743
BccI	CCATC	2 cut(s)	347, 675
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BcoDI	GTCTC	3 cut(s)	281, 570, 648
BcuI	ACTAGT	1 cut(s)	176
BfaI	CTAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	634
BisI	GCNGC	4 cut(s)	86, 269, 462, 757
BlsI	GCNGC	4 cut(s)	87, 270, 463, 758
BmiI	GGNNCC	4 cut(s)	387, 409, 612, 717
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	2 cut(s)	426, 630
BsaJI	CCNNGG	1 cut(s)	711
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	6 cut(s)	237, 267, 459, 462, 489, 492
Bse1I	ACTGG	3 cut(s)	120, 157, 409
Bse3DI	GCAATG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	711
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	74, 278, 548
BseNI	ACTGG	3 cut(s)	120, 157, 409
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	97, 743
BsgI	GTGCAG	1 cut(s)	104
Bsh1236I	CGCG	3 cut(s)	271, 464, 751
BshNI	GGYRCC	1 cut(s)	385
BsiSI	CCGG	3 cut(s)	330, 383, 584
BsiWI	CGTACG	1 cut(s)	595
BsmAI	GTCTC	3 cut(s)	281, 570, 648
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	126, 733
Bsp19I	CCATGG	1 cut(s)	711
BspACI	CCGC	4 cut(s)	269, 365, 462, 517
BspCNI	CTCAG	3 cut(s)	73, 277, 547
BspFNI	CGCG	3 cut(s)	271, 464, 751
BspLI	GGNNCC	4 cut(s)	387, 409, 612, 717
BspMI	ACCTGC	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	3 cut(s)	120, 157, 409
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	2 cut(s)	126, 733
BssT1I	CCWWGG	1 cut(s)	711
Bst4CI	ACNGT	2 cut(s)	205, 444
Bst6I	CTCTTC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	540, 761
BstDEI	CTNAG	3 cut(s)	60, 264, 534
BstDSI	CCRYGG	1 cut(s)	711
BstFNI	CGCG	3 cut(s)	271, 464, 751
BstKTI	GATC	2 cut(s)	129, 736
BstMAI	GTCTC	3 cut(s)	281, 570, 648
BstMBI	GATC	2 cut(s)	126, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	525, 626
BstNSI	RCATGY	1 cut(s)	427
BstUI	CGCG	3 cut(s)	271, 464, 751
BstV1I	GCAGC	2 cut(s)	97, 743
BstXI	CCANNNNNNTGG	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	711
BtsI	GCAGTG	2 cut(s)	173, 470
BtsIMutI	CAGTG	3 cut(s)	173, 440, 470
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	2 cut(s)	540, 761
CaiI	CAGNNNCTG	1 cut(s)	442
CseI	GACGC	1 cut(s)	740
Csp6I	GTAC	3 cut(s)	113, 445, 596
CviAII	CATG	4 cut(s)	46, 124, 424, 712
CviQI	GTAC	3 cut(s)	113, 445, 596
DdeI	CTNAG	3 cut(s)	60, 264, 534
DpnI	GATC	2 cut(s)	128, 735
DpnII	GATC	2 cut(s)	126, 733
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	711
EcoT14I	CCWWGG	1 cut(s)	711
EcoT22I	ATGCAT	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	711
FaeI	CATG	4 cut(s)	49, 127, 427, 715
FaiI	YATR	9 cut(s)	12, 47, 125, 132, 200, 425, 525, 705, 713
FatI	CATG	4 cut(s)	45, 123, 423, 711
Fnu4HI	GCNGC	4 cut(s)	86, 269, 462, 757
Fsp4HI	GCNGC	4 cut(s)	86, 269, 462, 757
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	4 cut(s)	86, 269, 462, 757
GsuI	CTGGAG	2 cut(s)	426, 630
HapII	CCGG	3 cut(s)	330, 383, 584
HgaI	GACGC	1 cut(s)	740
Hin1II	CATG	4 cut(s)	49, 127, 427, 715
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	682, 728
HpaII	CCGG	3 cut(s)	330, 383, 584
HphI	GGTGA	4 cut(s)	194, 236, 354, 405
Hpy166II	GTNNAC	3 cut(s)	144, 349, 447
Hpy188I	TCNGA	5 cut(s)	63, 720, 727, 733, 738
Hpy188III	TCNNGA	2 cut(s)	286, 567
Hpy8I	GTNNAC	3 cut(s)	144, 349, 447
Hpy99I	CGWCG	2 cut(s)	596, 756
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	2 cut(s)	205, 444
HpyCH4IV	ACGT	2 cut(s)	594, 633
HpyCH4V	TGCA	2 cut(s)	85, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	525, 626
HpyF3I	CTNAG	3 cut(s)	60, 264, 534
HpySE526I	ACGT	2 cut(s)	594, 633
Hsp92II	CATG	4 cut(s)	49, 127, 427, 715
Kzo9I	GATC	2 cut(s)	126, 733
LmnI	GCTCC	4 cut(s)	407, 480, 549, 721
Lsp1109I	GCAGC	2 cut(s)	97, 743
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	2 cut(s)	594, 633
MaeIII	GTNAC	2 cut(s)	224, 360
MalI	GATC	2 cut(s)	128, 735
MboI	GATC	2 cut(s)	126, 733
MboII	GAAGA	4 cut(s)	299, 302, 305, 479
MluCI	AATT	3 cut(s)	193, 491, 654
MluI	ACGCGT	1 cut(s)	749
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	3 cut(s)	659, 743, 750
Mph1103I	ATGCAT	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	3 cut(s)	330, 383, 584
MvnI	CGCG	3 cut(s)	271, 464, 751
MwoI	GCNNNNNNNGC	2 cut(s)	525, 626
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	2 cut(s)	126, 733
NlaIII	CATG	4 cut(s)	49, 127, 427, 715
NlaIV	GGNNCC	4 cut(s)	387, 409, 612, 717
NmuCI	GTSAC	2 cut(s)	224, 360
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	682
Pfl23II	CGTACG	1 cut(s)	595
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	87, 270, 463, 758
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PspLI	CGTACG	1 cut(s)	595
PspN4I	GGNNCC	4 cut(s)	387, 409, 612, 717
PstNI	CAGNNNCTG	1 cut(s)	442
PsyI	GACNNNGTC	1 cut(s)	148
RsaI	GTAC	3 cut(s)	114, 446, 597
RsaNI	GTAC	3 cut(s)	113, 445, 596
RseI	CAYNNNNRTG	1 cut(s)	177
SatI	GCNGC	4 cut(s)	86, 269, 462, 757
Sau3AI	GATC	2 cut(s)	126, 733
SchI	GAGTC	1 cut(s)	722
SmiMI	CAYNNNNRTG	1 cut(s)	177
SpeI	ACTAGT	1 cut(s)	176
Sse9I	AATT	3 cut(s)	193, 491, 654
SsiI	CCGC	4 cut(s)	269, 365, 462, 517
SspMI	CTAG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	711
TaaI	ACNGT	2 cut(s)	205, 444
TaiI	ACGT	2 cut(s)	597, 636
TaqI	TCGA	4 cut(s)	161, 420, 568, 652
TasI	AATT	3 cut(s)	193, 491, 654
TatI	WGTACW	2 cut(s)	112, 444
TauI	GCSGC	2 cut(s)	271, 464
TfiI	GAWTC	1 cut(s)	682
TscAI	CASTG	3 cut(s)	173, 447, 477
TseFI	GTSAC	2 cut(s)	224, 360
TseI	GCWGC	2 cut(s)	85, 756
Tsp45I	GTSAC	2 cut(s)	224, 360
TspGWI	ACGGA	2 cut(s)	334, 662
TspRI	CASTG	3 cut(s)	173, 447, 477
Tth111I	GACNNNGTC	1 cut(s)	148
XceI	RCATGY	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.