Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Reverse (-)

54253635 .. 54258815

Gene Structure 5181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3198 bp

ATGTTGCTTTGTTGCAATGTTTTGAGTTATGTCCAGAAAGACAGTGATCTCAATGAACCATTACTCGAGGAGGAGTATGAAATTCAAACTGATAGTTACACTACTGCTGGAATATGGAGCAAAATAACATTCCAGTGGATGAATCCAATTTTTAAAATGGGACTTCACATCCAAAAACTGGAAGTGTCTCATATACCATCTATTCCTCCTTCAGCAAGAGCCGAGAGTGCTTCTTCTTTGCTCCAGGAATCACTCGAACACTACTCTTCATTATTAAAAGCCATACTGAGGGCTGTTTGGAAATCCCTAGCCATAAATGCAGTTTTTGCAGGTGTCAATGTTGTTGCATCCTATACTGGTCCCTTCATAATCAAAAACTTTATGAAGTACATAGTTGGAAAGGATGACAGCTCAAACATGTATGGAGAGAAGCTTGCCTTCGTATTCTTTTTTGCAATGACTTTGGACTCAATTACTCAAAGACAAATGTCTTTTGGTGCTCGGCAAATTGGTCTACAAGTCAGAGCAGCTCTGACCGCCTTAATCTACAAGAAGTGCATCTCGATTTACTCTGGTCCAAGCAATGGTGAAATCATAAACTTAATCAACATAGACGTAGAAGTGGTTGGAGAATTCTTCTCTTCTATTCATGGAGCTTGGGTGCTTCCCCTTCAAGTGTTGTTCGCATTGATTATCTTGTACAGAAATCTCGGTGCTGCCCCTTCTCTGGCTGCCTTTCTGGCCACAGTAGCAGTAGTGGTATGCAACACACCATTGGCTCGAAGGCAACAAATTCTCCAATCAAAAATCATGGAAGCAAAGGATTCAAGAATCAAGAGAACCTCAGAGACTCTAAAGAGCATGAGAGTCATAAAATTCAATTCATGGGTTCCTAGTTTCTTAGAGAAGCTACTTCAACTCAGAGAAACTGAGAAAAGTTGGTTAAGGAGATTTTTGTACACTAAGGCGGCAGTGGTATTTCTCTTCTGGACTTCACCAACCATAGTTTCAGTGGTTACTTTTGGTGTTTGCATCATGATGAAAACACCATTAGAACCATATACAGTCCTGTCAGCTTTAGCCACTTTCAGAATCCTTACCGAGCCAATTTACAACCTTCCAGAGTTTATCTCCACGATTATCCAAACAAAGGTTTCGGTTAAGCGAATTCAAGAATTCATCAGATTAGATAAACAAGTGGAGCTGATTCCTTGTGATTATTCTTGCACTACATCATCTACTTCAGAAATCAGGGTTGAAATGGAGTCTGGAGAGTTTTCTTGGAAGGCAAGCAATGAACATGTAGAAAGACCTACAATCACAGATTTCAAGATGTGGCCTAACGGAGATTTGACAGTCGTGGGGGAAGGAGGATTAAATCTAAGTGGAGGCCAAAAACAAAGGATTCAACTCGCAAGAGCTGTCTACAATGATGCTGATATATATGTCTTGGACGACCCTTTCAGTGCTGTAGATGCACATACTGGAACACATTTGTTCACGAAATGTATCTTGCAAGAATTGTCTGAAAAAACCGTAATCTATGCTACTCACCAACTAGAGTTTTTGGAAGCAGCAGACTATGTTTTGGTAGTTAAAGATGGTCAAATTGCTCAAGCCGGCACTTACGAGAAGTTGATTAAAGATCCTAATGGCGAACTTGTCAGACAAATGACTGCACATAGAAAATCTCTACACCAAGTTCACAGCAGTCGACCTGATTCTTTAAGCAACACTACAACTACTGGCCTCGTGGATAATGAAATTACTGAAAGAGTATTGGATATTGAAGAAACGGAAAAAGCTTCAACCAATGACCAGATTACTGTCAAAGATATCCGAGGGGAAGAAGAAGAAACACACAATGGTCGGGTAAAATGGAGTGTATATTCTACATTTGTGACTTGTGCTTTTGGAGGTCTACTGCTTCCAGTGATCCTTCTCTGTCACATCCTCTTCCAAGTGCTCCAGATGGCAAGCAACTACTGGATTGCTTGGGCAGCAGGGAAGGAAAACACTGTCACCAGAGGAAACATGTTGTGGATTTTCGCTCTTTTATCTGGTGGAAGCTCTGTCTTCATCTTGGGAAGGGCGGTCTTCCTTTCAGTTATTACTATTGAAACCTCCCAGAATCTCTTTGTTGGGATGATCACTTCAGTTTTCCGAGCGCCTATGACATTTTTCGACTCTACACCTTCTAGTCGAATCCTCACTAGGATCAAAGCACAGTCGACACAGATATTACATTCAGGTTTAGCAGGAGTGGCTGCATCATATGGTCTAAACCTTAGTGTCCTGCAGGCTTGGGTGATTTGGAATCTGTGCAATGTTGAAAACAAAATGATATCTGTTGAGAGAATTCTTCAATTCACTGGATTACAAAGTGAGGCACCACTTGTGATCGAAGCTTCTAGGCCAAACTCTGAATGGCCATATGAAGGACAAATTGAATTTCAAAACGTGCAAGTTCAATATCAGCCTGAGGGTCCAATGGTACTGAAAGGGATCACTTGCACATTCTCTAAAAGGATGAAAATTGGAGTGGTGGGAAGAACAGGAAGTGGAAAGTCCACAATGATCCAAGCCTTGTTTAGAGTTGTTGAGCTCTCAGGAGGGAAAATTCTCATTGATGAACAAGACATTTCTAAAATAGGCCTGCAGGATTTAAGGTCAAGTTTAGGCATTATCCCACAGGACCCAACTTTATTTCAAGGAAGCTTGAGGAATAATCTGGATCCTCTGCAGCAACATTCTGATCCAGAAATACTGGAGGTTGTGAAGAAATGTCGACTTGGGAACTTAGTGAGGCAAGACCAAATGCTCCTGGATGCACCTGTTTCTGAAGATGGAGAAAACTGGAGCGTCGGACAGAGGCAGCTTGTCTGTCTAGCCAGAGTGCTTCTAAACAAGAGGAAAATTCTAGTGCTAGATGAGGCTACTGCATCTGTAGATACAGCAACAGATAATGCAATTCAAGAGGCAATAAGGAAAGAGACAAGCGAATGCACAGTTATCACCGTGGCTCACCGGATTCCTACTGTTATGGACAGTGACATGGTTCTAGTTCTTGATGGAGGTAGGATTGTGGAGTATGAATCTCCCGCTCGGCTGATTAAGGAAAACTCGTCTGCATTTTCGAAGTTAGTTGCGGAATTCTTGAGGAGATCTTCCATAAGAAAGAACAACTGCTCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1065

Amino Acids

118.94

Weight (kDa)

6.31

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	104 - 369	1.9e-20	ABC transporter transmembrane region
ABC_tran	PF00005	452 - 488	1.2e-06	ABC transporter
ABC_membrane	PF00664	647 - 763	2.7e-06	ABC transporter transmembrane region
ABC_tran	PF00005	833 - 981	1.9e-25	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	2389
AccB7I	CCANNNNNTGG	2 cut(s)	178, 584
AccBSI	CCGCTC	1 cut(s)	3104
AccI	GTMKAC	6 cut(s)	514, 1425, 1714, 1921, 2231, 2788
AciI	CCGC	5 cut(s)	537, 968, 2093, 3102, 3149
AclWI	GGATC	8 cut(s)	1640, 1930, 2225, 2513, 2572, 2729, 2742, 2750
AcoI	YGGCCR	2 cut(s)	741, 2429
AcuI	CTGAAG	4 cut(s)	195, 1227, 2139, 2862
AfaI	GTAC	4 cut(s)	389, 701, 959, 2496
AfiI	CCNNNNNNNGG	6 cut(s)	178, 288, 584, 727, 1150, 2438
AflIII	ACRYGT	3 cut(s)	417, 1300, 2034
AjnI	CCWGG	2 cut(s)	243, 2823
AjuI	GAANNNNNNNTTGG	2 cut(s)	991, 1023
Alw21I	GWGCWC	3 cut(s)	502, 1968, 2607
Alw26I	GTCTC	3 cut(s)	192, 842, 2987
AlwI	GGATC	8 cut(s)	1640, 1930, 2225, 2513, 2572, 2729, 2742, 2750
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	7 cut(s)	741, 1337, 1390, 1747, 2414, 2429, 2653
ApeKI	GCWGC	8 cut(s)	527, 716, 731, 1574, 2000, 2267, 2743, 2875
AspLEI	GCGC	1 cut(s)	2170
AspS9I	GGNCC	4 cut(s)	359, 575, 2486, 2695
AsuHPI	GGTGA	7 cut(s)	599, 987, 1544, 2014, 2320, 3007, 3017
AsuII	TTCGAA	1 cut(s)	3137
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	4 cut(s)	359, 575, 2486, 2695
AxyI	CCTNAGG	1 cut(s)	2481
BalI	TGGCCA	2 cut(s)	743, 2431
BamHI	GGATCC	1 cut(s)	2734
BanI	GGYRCC	1 cut(s)	2389
BanII	GRGCYC	1 cut(s)	2607
BauI	CACGAG	1 cut(s)	1751
BbsI	GAAGAC	2 cut(s)	2068, 2089
Bbv12I	GWGCWC	3 cut(s)	502, 1968, 2607
BbvI	GCAGC	8 cut(s)	539, 703, 718, 1586, 2012, 2254, 2755, 2887
BccI	CCATC	5 cut(s)	205, 1595, 1966, 2840, 3065
BciT130I	CCWGG	2 cut(s)	245, 2825
BclI	TGATCA	1 cut(s)	2148
BcoDI	GTCTC	3 cut(s)	192, 842, 2987
BfmI	CTRYAG	5 cut(s)	1470, 2297, 2657, 2741, 2946
BfoI	RGCGCY	1 cut(s)	2171
BfuAI	ACCTGC	1 cut(s)	320
BglI	GCCNNNNNGGC	1 cut(s)	740
BglII	AGATCT	1 cut(s)	3164
BisI	GCNGC	9 cut(s)	528, 717, 732, 969, 1575, 2001, 2268, 2744, 2876
BlsI	GCNGC	9 cut(s)	529, 718, 733, 970, 1576, 2002, 2269, 2745, 2877
Bme1390I	CCNGG	2 cut(s)	245, 2825
Bme18I	GGWCC	4 cut(s)	359, 575, 2486, 2695
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	4 cut(s)	359, 575, 2486, 2695
BmiI	GGNNCC	6 cut(s)	361, 891, 2391, 2487, 2697, 2736
BmrFI	CCNGG	2 cut(s)	245, 2825
BmsI	GCATC	8 cut(s)	356, 567, 1041, 1423, 1465, 2279, 2818, 2951
BoxI	GACNNNNGTC	1 cut(s)	487
BpiI	GAAGAC	2 cut(s)	2068, 2089
BplI	GAGNNNNNCTC	2 cut(s)	1115, 1147
BpmI	CTGGAG	5 cut(s)	227, 1290, 1952, 2789, 2878
Bpu14I	TTCGAA	1 cut(s)	3137
BpuEI	CTTGAG	3 cut(s)	1599, 2740, 3178
BsaJI	CCNNGG	2 cut(s)	1840, 3018
BsaWI	WCCGGW	1 cut(s)	3027
BsaXI	ACNNNNNCTCC	4 cut(s)	645, 675, 780, 810
Bsc4I	CCNNNNNNNGG	6 cut(s)	178, 288, 584, 727, 1150, 2438
Bse118I	RCCGGY	1 cut(s)	1619
Bse21I	CCTNAGG	1 cut(s)	2481
Bse3DI	GCAATG	5 cut(s)	22, 462, 589, 1300, 2332
BseBI	CCWGG	2 cut(s)	245, 2825
BseDI	CCNNGG	2 cut(s)	1840, 3018
BseGI	GGATG	8 cut(s)	144, 168, 347, 409, 1950, 2151, 2535, 2833
BseLI	CCNNNNNNNGG	6 cut(s)	178, 288, 584, 727, 1150, 2438
BseMI	GCAATG	5 cut(s)	22, 462, 589, 1300, 2332
BseMII	CTCAG	6 cut(s)	278, 858, 921, 934, 2472, 2622
BseRI	GAGGAG	3 cut(s)	83, 86, 3175
BseXI	GCAGC	8 cut(s)	539, 703, 718, 1586, 2012, 2254, 2755, 2887
BsgI	GTGCAG	1 cut(s)	1662
BshFI	GGCC	7 cut(s)	743, 1339, 1392, 1749, 2416, 2431, 2655
BshNI	GGYRCC	1 cut(s)	2389
BsiHKAI	GWGCWC	3 cut(s)	502, 1968, 2607
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	1620, 3028
BslFI	GGGAC	2 cut(s)	174, 345
BslI	CCNNNNNNNGG	6 cut(s)	178, 288, 584, 727, 1150, 2438
BsmAI	GTCTC	3 cut(s)	192, 842, 2987
BsmFI	GGGAC	2 cut(s)	174, 345
BsmI	GAATGC	1 cut(s)	3008
BsnI	GGCC	7 cut(s)	743, 1339, 1392, 1749, 2416, 2431, 2655
BsoBI	CYCGRG	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	3137
Bsp1286I	GDGCHC	3 cut(s)	502, 1968, 2607
Bsp1407I	TGTACA	2 cut(s)	699, 957
BspACI	CCGC	5 cut(s)	537, 968, 2093, 3102, 3149
BspANI	GGCC	7 cut(s)	743, 1339, 1392, 1749, 2416, 2431, 2655
BspCNI	CTCAG	6 cut(s)	279, 857, 922, 933, 2473, 2621
BspHI	TCATGA	1 cut(s)	1035
BspLI	GGNNCC	6 cut(s)	361, 891, 2391, 2487, 2697, 2736
BspMAI	CTGCAG	3 cut(s)	2301, 2661, 2745
BspMI	ACCTGC	1 cut(s)	320
BspPI	GGATC	8 cut(s)	1640, 1930, 2225, 2513, 2572, 2729, 2742, 2750
BspT104I	TTCGAA	1 cut(s)	3137
BspT107I	GGYRCC	1 cut(s)	2389
BsrBI	CCGCTC	1 cut(s)	3104
BsrDI	GCAATG	5 cut(s)	22, 462, 589, 1300, 2332
BsrFI	RCCGGY	1 cut(s)	1619
BsrGI	TGTACA	2 cut(s)	699, 957
BssAI	RCCGGY	1 cut(s)	1619
BssECI	CCNNGG	2 cut(s)	1840, 3018
BssSI	CACGAG	1 cut(s)	1751
Bst2BI	CACGAG	1 cut(s)	1751
Bst2UI	CCWGG	2 cut(s)	245, 2825
Bst6I	CTCTTC	4 cut(s)	271, 646, 989, 1961
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstAUI	TGTACA	2 cut(s)	699, 957
BstBI	TTCGAA	1 cut(s)	3137
BstC8I	GCNNGC	6 cut(s)	435, 1291, 1621, 1978, 2301, 2657
BstDSI	CCRYGG	1 cut(s)	3018
BstF5I	GGATG	8 cut(s)	144, 168, 347, 409, 1950, 2151, 2535, 2833
BstH2I	RGCGCY	1 cut(s)	2171
BstHHI	GCGC	1 cut(s)	2170
BstMAI	GTCTC	3 cut(s)	192, 842, 2987
BstMWI	GCNNNNNNNGC	9 cut(s)	227, 317, 326, 536, 740, 749, 1475, 2000, 2264
BstNI	CCWGG	2 cut(s)	245, 2825
BstNSI	RCATGY	3 cut(s)	421, 1304, 2038
BstPAI	GACNNNNGTC	1 cut(s)	487
BstSCI	CCNGG	2 cut(s)	243, 2823
BstSFI	CTRYAG	5 cut(s)	1470, 2297, 2657, 2741, 2946
BstV1I	GCAGC	8 cut(s)	539, 703, 718, 1586, 2012, 2254, 2755, 2887
BstV2I	GAAGAC	2 cut(s)	2068, 2089
BstX2I	RGATCY	3 cut(s)	1645, 2734, 3164
BstYI	RGATCY	3 cut(s)	1645, 2734, 3164
Bsu36I	CCTNAGG	1 cut(s)	2481
BsuRI	GGCC	7 cut(s)	743, 1339, 1392, 1749, 2416, 2431, 2655
BtgI	CCRYGG	1 cut(s)	3018
BtsCI	GGATG	8 cut(s)	144, 168, 347, 409, 1950, 2151, 2535, 2833
BtsI	GCAGTG	1 cut(s)	978
BtsIMutI	CAGTG	9 cut(s)	49, 140, 978, 1017, 1471, 1938, 2016, 2370, 3055
BveI	ACCTGC	1 cut(s)	320
Cac8I	GCNNGC	6 cut(s)	435, 1291, 1621, 1978, 2301, 2657
CciI	TCATGA	1 cut(s)	1035
CfoI	GCGC	1 cut(s)	2170
Cfr10I	RCCGGY	1 cut(s)	1619
Cfr13I	GGNCC	4 cut(s)	359, 575, 2486, 2695
CseI	GACGC	1 cut(s)	2851
Csp6I	GTAC	4 cut(s)	388, 700, 958, 2495
CviAII	CATG	9 cut(s)	418, 650, 811, 862, 885, 1036, 1301, 2035, 3055
CviQI	GTAC	4 cut(s)	388, 700, 958, 2495
DraI	TTTAAA	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	741, 2429
Eam1104I	CTCTTC	4 cut(s)	271, 646, 989, 1961
EarI	CTCTTC	4 cut(s)	271, 646, 989, 1961
Ecl136II	GAGCTC	1 cut(s)	2605
Eco147I	AGGCCT	1 cut(s)	2655
Eco24I	GRGCYC	1 cut(s)	2607
Eco32I	GATATC	2 cut(s)	1837, 2346
Eco47I	GGWCC	4 cut(s)	359, 575, 2486, 2695
Eco53kI	GAGCTC	1 cut(s)	2605
Eco57I	CTGAAG	4 cut(s)	195, 1227, 2139, 2862
Eco81I	CCTNAGG	1 cut(s)	2481
Eco88I	CYCGRG	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	2605
EcoO109I	RGGNCCY	1 cut(s)	2695
EcoRI	GAATTC	5 cut(s)	632, 1167, 1175, 2358, 3152
EcoRII	CCWGG	2 cut(s)	243, 2823
EcoRV	GATATC	2 cut(s)	1837, 2346
EcoT38I	GRGCYC	1 cut(s)	2607
FaeI	CATG	9 cut(s)	421, 653, 814, 865, 888, 1039, 1304, 2038, 3058
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	2 cut(s)	174, 345
FatI	CATG	9 cut(s)	417, 649, 810, 861, 884, 1035, 1300, 2034, 3054
FauI	CCCGC	1 cut(s)	3109
FauNDI	CATATG	2 cut(s)	2275, 2434
FbaI	TGATCA	1 cut(s)	2148
FblI	GTMKAC	6 cut(s)	514, 1425, 1714, 1921, 2231, 2788
Fnu4HI	GCNGC	9 cut(s)	528, 717, 732, 969, 1575, 2001, 2268, 2744, 2876
FokI	GGATG	8 cut(s)	151, 155, 334, 416, 1937, 2158, 2542, 2840
FriOI	GRGCYC	1 cut(s)	2607
Fsp4HI	GCNGC	9 cut(s)	528, 717, 732, 969, 1575, 2001, 2268, 2744, 2876
GlaI	GCGC	1 cut(s)	2169
GluI	GCNGC	9 cut(s)	528, 717, 732, 969, 1575, 2001, 2268, 2744, 2876
GsuI	CTGGAG	5 cut(s)	227, 1290, 1952, 2789, 2878
HaeII	RGCGCY	1 cut(s)	2171
HaeIII	GGCC	7 cut(s)	743, 1339, 1392, 1749, 2416, 2431, 2655
HapII	CCGG	2 cut(s)	1620, 3028
HgaI	GACGC	1 cut(s)	2851
HhaI	GCGC	1 cut(s)	2170
Hin1II	CATG	9 cut(s)	421, 653, 814, 865, 888, 1039, 1304, 2038, 3058
Hin6I	GCGC	1 cut(s)	2168
HinP1I	GCGC	1 cut(s)	2168
HincII	GTYRAC	3 cut(s)	1715, 2232, 2789
HindII	GTYRAC	3 cut(s)	1715, 2232, 2789
HindIII	AAGCTT	4 cut(s)	431, 1803, 2406, 2716
HpaII	CCGG	2 cut(s)	1620, 3028
HphI	GGTGA	7 cut(s)	599, 987, 1544, 2014, 2320, 3007, 3017
Hpy99I	CGWCG	1 cut(s)	2867
HpyCH4IV	ACGT	2 cut(s)	615, 2460
HpyF10VI	GCNNNNNNNGC	9 cut(s)	227, 317, 326, 536, 740, 749, 1475, 2000, 2264
HpySE526I	ACGT	2 cut(s)	615, 2460
Hsp92II	CATG	9 cut(s)	421, 653, 814, 865, 888, 1039, 1304, 2038, 3058
HspAI	GCGC	1 cut(s)	2168
KroI	GCCGGC	1 cut(s)	1619
KroNI	GCCGGC	1 cut(s)	1621
Ksp22I	TGATCA	1 cut(s)	2148
LmnI	GCTCC	7 cut(s)	117, 246, 653, 1201, 1971, 2826, 2859
Lsp1109I	GCAGC	8 cut(s)	539, 703, 718, 1586, 2012, 2254, 2755, 2887
LweI	GCATC	8 cut(s)	356, 567, 1041, 1423, 1465, 2279, 2818, 2951
MaeII	ACGT	2 cut(s)	615, 2460
MaeIII	GTNAC	6 cut(s)	95, 1015, 1900, 1946, 2020, 3050
MbiI	CCGCTC	1 cut(s)	3104
MflI	RGATCY	3 cut(s)	1645, 2734, 3164
MhlI	GDGCHC	3 cut(s)	502, 1968, 2607
MlsI	TGGCCA	2 cut(s)	743, 2431
MluNI	TGGCCA	2 cut(s)	743, 2431
MlyI	GAGTC	5 cut(s)	461, 844, 876, 1274, 2180
MmeI	TCCRAC	3 cut(s)	376, 607, 2845
Mox20I	TGGCCA	2 cut(s)	743, 2431
MroNI	GCCGGC	1 cut(s)	1619
MscI	TGGCCA	2 cut(s)	743, 2431
MslI	CAYNNNNRTG	2 cut(s)	133, 1037
Msp20I	TGGCCA	2 cut(s)	743, 2431
MspI	CCGG	2 cut(s)	1620, 3028
MspR9I	CCNGG	2 cut(s)	245, 2825
Mva1269I	GAATGC	1 cut(s)	3008
MvaI	CCWGG	2 cut(s)	245, 2825
MwoI	GCNNNNNNNGC	9 cut(s)	227, 317, 326, 536, 740, 749, 1475, 2000, 2264
NaeI	GCCGGC	1 cut(s)	1621
NdeI	CATATG	2 cut(s)	2275, 2434
NgoMIV	GCCGGC	1 cut(s)	1619
NlaIII	CATG	9 cut(s)	421, 653, 814, 865, 888, 1039, 1304, 2038, 3058
NlaIV	GGNNCC	6 cut(s)	361, 891, 2391, 2487, 2697, 2736
NmeAIII	GCCGAG	3 cut(s)	247, 481, 3085
NmuCI	GTSAC	4 cut(s)	1900, 1946, 2020, 3050
NspI	RCATGY	3 cut(s)	421, 1304, 2038
NspV	TTCGAA	1 cut(s)	3137
PaeR7I	CTCGAG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	1035
PaqCI	CACCTGC	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	2655
PciI	ACATGT	3 cut(s)	417, 1300, 2034
PctI	GAATGC	1 cut(s)	3008
PdiI	GCCGGC	1 cut(s)	1621
PflMI	CCANNNNNTGG	2 cut(s)	178, 584
PfoI	TCCNGGA	2 cut(s)	243, 2823
PkrI	GCNGC	9 cut(s)	529, 718, 733, 970, 1576, 2002, 2269, 2745, 2877
PleI	GAGTC	5 cut(s)	461, 844, 875, 1273, 2180
PpsI	GAGTC	5 cut(s)	461, 844, 875, 1273, 2180
PpuMI	RGGWCCY	1 cut(s)	2695
PscI	ACATGT	3 cut(s)	417, 1300, 2034
PshAI	GACNNNNGTC	1 cut(s)	487
Psp124BI	GAGCTC	1 cut(s)	2607
Psp5II	RGGWCCY	1 cut(s)	2695
Psp6I	CCWGG	2 cut(s)	243, 2823
PspGI	CCWGG	2 cut(s)	243, 2823
PspN4I	GGNNCC	6 cut(s)	361, 891, 2391, 2487, 2697, 2736
PspPI	GGNCC	4 cut(s)	359, 575, 2486, 2695
PspPPI	RGGWCCY	1 cut(s)	2695
PspXI	VCTCGAGB	1 cut(s)	65
PstI	CTGCAG	3 cut(s)	2301, 2661, 2745
PsuI	RGATCY	3 cut(s)	1645, 2734, 3164
RsaI	GTAC	4 cut(s)	389, 701, 959, 2496
RsaNI	GTAC	4 cut(s)	388, 700, 958, 2495
RseI	CAYNNNNRTG	2 cut(s)	133, 1037
SacI	GAGCTC	1 cut(s)	2607
SalI	GTCGAC	3 cut(s)	1713, 2230, 2787
SatI	GCNGC	9 cut(s)	528, 717, 732, 969, 1575, 2001, 2268, 2744, 2876
Sau96I	GGNCC	4 cut(s)	359, 575, 2486, 2695
SbfI	CCTGCAGG	2 cut(s)	2301, 2661
SchI	GAGTC	5 cut(s)	461, 844, 876, 1274, 2180
ScrFI	CCNGG	2 cut(s)	245, 2825
SdaI	CCTGCAGG	2 cut(s)	2301, 2661
SduI	GDGCHC	3 cut(s)	502, 1968, 2607
SfaNI	GCATC	8 cut(s)	356, 567, 1041, 1423, 1465, 2279, 2818, 2951
SfcI	CTRYAG	5 cut(s)	1470, 2297, 2657, 2741, 2946
Sfr274I	CTCGAG	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	3137
SinI	GGWCC	4 cut(s)	359, 575, 2486, 2695
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	2 cut(s)	133, 1037
SmlI	CTYRAG	4 cut(s)	65, 1614, 2719, 3157
SmoI	CTYRAG	4 cut(s)	65, 1614, 2719, 3157
Sse8387I	CCTGCAGG	2 cut(s)	2301, 2661
SseBI	AGGCCT	1 cut(s)	2655
SsiI	CCGC	5 cut(s)	537, 968, 2093, 3102, 3149
SstI	GAGCTC	1 cut(s)	2607
StuI	AGGCCT	1 cut(s)	2655
StyD4I	CCNGG	2 cut(s)	243, 2823
TaiI	ACGT	2 cut(s)	618, 2463
TatI	WGTACW	3 cut(s)	387, 699, 957
TauI	GCSGC	1 cut(s)	971
TscAI	CASTG	9 cut(s)	49, 140, 978, 1017, 1471, 1938, 2023, 2377, 3055
TseFI	GTSAC	4 cut(s)	1900, 1946, 2020, 3050
TseI	GCWGC	8 cut(s)	527, 716, 731, 1574, 2000, 2267, 2743, 2875
Tsp45I	GTSAC	4 cut(s)	1900, 1946, 2020, 3050
TspGWI	ACGGA	2 cut(s)	1359, 1811
TspRI	CASTG	9 cut(s)	49, 140, 978, 1017, 1471, 1938, 2023, 2377, 3055
Van91I	CCANNNNNTGG	2 cut(s)	178, 584
VpaK11BI	GGWCC	4 cut(s)	359, 575, 2486, 2695
XceI	RCATGY	3 cut(s)	421, 1304, 2038
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1009, 2424
XhoI	CTCGAG	1 cut(s)	65
XmiI	GTMKAC	6 cut(s)	514, 1425, 1714, 1921, 2231, 2788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.