Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Reverse (-)

42503217 .. 42503558

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0252100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTTGTGGGCATATTACAAGTATCTGAAGGACCAGATGATAGTGTTGACCCTGAAAATGGCAGGGGTGGCCCTCGAGATCACCTGCATCGGAGTAATTATTGTTCTTGGTCCCCCAGATCTTAGGGCTGTGACATTGCCATGGCTCTGTGGCCTGGATTTGGGCATCCCCTCTTGCCATTCTCCTGATTGCTCGCAGGGTTGTGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

70

Amino Acids

7.56

Weight (kDa)

5.45

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	58, 160
AjnI	CCWGG	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	69, 151
AspS9I	GGNCC	4 cut(s)	31, 70, 110, 206
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	3 cut(s)	31, 110, 206
BciT130I	CCWGG	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	3 cut(s)	31, 110, 206
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	4 cut(s)	31, 70, 110, 206
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	96, 174
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 160
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	58, 160
BseMI	GCAATG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	71, 153
BsiHKCI	CYCGRG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	58, 160
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	71, 153
BsoBI	CYCGRG	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	78, 118
Bsp19I	CCATGG	1 cut(s)	140
BspANI	GGCC	2 cut(s)	71, 153
BspLI	GGNNCC	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	2 cut(s)	78, 118
BssT1I	CCWWGG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	81, 121
BstMBI	GATC	2 cut(s)	78, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	71, 153
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	194
Cfr13I	GGNCC	4 cut(s)	31, 70, 110, 206
CviAII	CATG	1 cut(s)	141
CviJI	RGCY	4 cut(s)	71, 128, 145, 153
CviKI_1	RGCY	4 cut(s)	71, 128, 145, 153
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	2 cut(s)	80, 120
DpnII	GATC	2 cut(s)	78, 118
Eco130I	CCWWGG	1 cut(s)	140
Eco47I	GGWCC	3 cut(s)	31, 110, 206
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	1 cut(s)	144
FaiI	YATR	2 cut(s)	13, 142
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	1 cut(s)	140
FokI	GGATG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	71, 153
Hin1II	CATG	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	48, 206
Hpy188I	TCNGA	2 cut(s)	27, 92
Hpy188III	TCNNGA	2 cut(s)	76, 185
Hpy8I	GTNNAC	2 cut(s)	48, 206
HpyAV	CCTTC	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	78, 118
LpnPI	CCDG	9 cut(s)	47, 48, 65, 97, 129, 140, 167, 182, 198
LweI	GCATC	2 cut(s)	96, 174
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	80, 120
MboI	GATC	2 cut(s)	78, 118
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	1 cut(s)	96
MnlI	CCTC	2 cut(s)	83, 181
MslI	CAYNNNNRTG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	2 cut(s)	78, 118
NlaIII	CATG	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	130
PaeR7I	CTCGAG	1 cut(s)	74
PaqCI	CACCTGC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	4 cut(s)	31, 70, 110, 206
PsrI	GAACNNNNNNTAC	2 cut(s)	87, 119
PsuI	RGATCY	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	139
Sau3AI	GATC	2 cut(s)	78, 118
Sau96I	GGNCC	4 cut(s)	31, 70, 110, 206
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	2 cut(s)	86, 211
SfaNI	GCATC	2 cut(s)	96, 174
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	3 cut(s)	31, 110, 206
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	140
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
VpaK11BI	GGWCC	3 cut(s)	31, 110, 206
XhoI	CTCGAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.