Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

48139818 .. 48141233

Gene Structure 1416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG313800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAGAAAGGGTTGCAAGGTGGGAGTCTGCGGTTCTGTTGGCTCAGGCAAGTCTAGCCTACTATGCAGTATACTTCGTGAGATTCCACAAATTTCTGGGCTAGCAACCAAGTGTTATGGAACAAAATCTTATGTTGCACAAAGTCCATGGATCCAAACTGGAACCATAAGGGACAACATCTTGTTTGGTAAGGAGATGAATGAGGGTTTTTATAAGAACATTGTGGAATGTTGTGCTTTGAACCAGGATTTCAAGATGTGGCCTAACGGAGATTTGACAGTCGTGGGGGAAAGAGGAATAAATCTAAGTGGAGGCCAAAAACAAAGGATTCAACTCGCAAGAGCTGTCTACAGTGATGCTGATGTATATATCTTAGACGACCCTTTCAGTGCTGTAGATGCACATACAGGAACACATTTGTTCACGGTAGTTAAAGATGGTCAAATTGGTCAATCTGGCACTTATGGGAAGTTGATTGAAGATCCTAATGGTGAACTTGTCATACAAATGACTGCACATAGAAAATCTCTACACCAAGTTCACAGCAGTCAACGACCGGATTCTTTAAGCAACACCACAACTACTGGCCCCATGAAAAATGGAATTGCTGAAAGAGTATTGGATATTGAAGAAACGGAAAAAGCTTCAACCAATGACCGGATTACTGTCAAAGAGATCCGAGAAGAAGAAGAAGAAGCACACACTGGTCGCGTAAAATGGAGTGTATATTCTACATTTGTGACTTGTGCTTTTAGAGGTCTACTGCTTCCAGTAATCCTTGTCTGTCACGTTCTCTTCCAAGTGCTCCAGATGGCAAGCAACTACTGGATTGCCTGGGCAGTAGGGAAGGAAAACACTGTCACCAGAGGAAACATGATATGGATTTTCGCTCTTTTATCTGGTGCAAGCTCTGTCTTCCTCTTGGGAAGGGCTGTTTTCCTTTCAGTTATCACTATTGAAACTTCCCAGCATCTCTTTGTTGGGATGATTACTTCAGTTTTCCGAGCGCCTATGGCATTTTTCGACTCTACACCTTCTAGTCGAATCCTCACTAGGGTCAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

355

Amino Acids

39.16

Weight (kDa)

8.37

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	2 - 129	1.3e-13	ABC transporter
ABC_membrane	PF00664	260 - 355	2.9e-08	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AccI	GTMKAC	3 cut(s)	70, 348, 760
AccII	CGCG	1 cut(s)	711
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	4 cut(s)	145, 158, 476, 670
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	978
AfiI	CCNNNNNNNGG	2 cut(s)	657, 1054
AgsI	TTSAA	7 cut(s)	241, 253, 332, 479, 629, 648, 959
AjnI	CCWGG	2 cut(s)	243, 833
AluBI	AGCT	3 cut(s)	344, 644, 909
AluI	AGCT	3 cut(s)	344, 644, 909
Alw21I	GWGCWC	1 cut(s)	807
AlwI	GGATC	4 cut(s)	145, 158, 476, 670
AoxI	GGCC	3 cut(s)	260, 313, 586
ApoI	RAATTY	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	1009
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	2 cut(s)	503, 853
AsuNHI	GCTAGC	1 cut(s)	100
BamHI	GGATCC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	907
Bbv12I	GWGCWC	1 cut(s)	807
BccI	CCATC	2 cut(s)	431, 805
BciT130I	CCWGG	2 cut(s)	245, 835
BfaI	CTAG	4 cut(s)	54, 101, 1038, 1053
BfmI	CTRYAG	2 cut(s)	349, 393
BfoI	RGCGCY	1 cut(s)	1010
Bme1390I	CCNGG	2 cut(s)	245, 835
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	3 cut(s)	152, 163, 589
BmrFI	CCNGG	2 cut(s)	245, 835
BmsI	GCATC	3 cut(s)	346, 388, 979
BmtI	GCTAGC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	907
BpmI	CTGGAG	1 cut(s)	791
Bpu10I	CCTNAGC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	146, 834
BsaWI	WCCGGW	2 cut(s)	556, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	657, 1054
Bse1I	ACTGG	5 cut(s)	163, 589, 709, 770, 830
BseBI	CCWGG	2 cut(s)	245, 835
BseDI	CCNNGG	2 cut(s)	146, 834
BseGI	GGATG	1 cut(s)	990
BseLI	CCNNNNNNNGG	2 cut(s)	657, 1054
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	5 cut(s)	163, 589, 709, 770, 830
BseYI	CCCAGC	1 cut(s)	966
BsgI	GTGCAG	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	711
Bsh1285I	CGRYCG	1 cut(s)	557
BshFI	GGCC	3 cut(s)	262, 315, 588
BsiEI	CGRYCG	1 cut(s)	557
BsiHKAI	GWGCWC	1 cut(s)	807
BsiSI	CCGG	2 cut(s)	557, 658
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	657, 1054
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	262, 315, 588
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp143I	GATC	3 cut(s)	150, 481, 675
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	3 cut(s)	262, 315, 588
BspCNI	CTCAG	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	711
BspLI	GGNNCC	3 cut(s)	152, 163, 589
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	4 cut(s)	145, 158, 476, 670
BsrI	ACTGG	5 cut(s)	163, 589, 709, 770, 830
BssECI	CCNNGG	2 cut(s)	146, 834
BssMI	GATC	3 cut(s)	150, 481, 675
BssNAI	GTATAC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	146
Bst1107I	GTATAC	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	245, 835
Bst4CI	ACNGT	5 cut(s)	280, 353, 427, 667, 859
Bst6I	CTCTTC	1 cut(s)	800
BstC8I	GCNNGC	3 cut(s)	102, 817, 907
BstDEI	CTNAG	3 cut(s)	43, 305, 373
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	990
BstFNI	CGCG	1 cut(s)	711
BstH2I	RGCGCY	1 cut(s)	1010
BstHHI	GCGC	1 cut(s)	1009
BstKTI	GATC	3 cut(s)	153, 484, 678
BstMBI	GATC	3 cut(s)	150, 481, 675
BstMCI	CGRYCG	1 cut(s)	557
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 63, 398, 1013
BstNI	CCWGG	2 cut(s)	245, 835
BstSCI	CCNGG	2 cut(s)	243, 833
BstSFI	CTRYAG	2 cut(s)	349, 393
BstUI	CGCG	1 cut(s)	711
BstV2I	GAAGAC	1 cut(s)	907
BstX2I	RGATCY	3 cut(s)	150, 481, 675
BstYI	RGATCY	3 cut(s)	150, 481, 675
BstZ17I	GTATAC	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	262, 315, 588
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	990
BtsIMutI	CAGTG	4 cut(s)	358, 394, 702, 855
Cac8I	GCNNGC	3 cut(s)	102, 817, 907
CfoI	GCGC	1 cut(s)	1009
Cfr13I	GGNCC	1 cut(s)	587
CviAII	CATG	3 cut(s)	147, 592, 874
DdeI	CTNAG	3 cut(s)	43, 305, 373
DpnI	GATC	3 cut(s)	152, 483, 677
DpnII	GATC	3 cut(s)	150, 481, 675
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
Eco130I	CCWWGG	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	978
EcoRII	CCWGG	2 cut(s)	243, 833
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	3 cut(s)	150, 595, 877
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	3 cut(s)	146, 591, 873
FblI	GTMKAC	3 cut(s)	70, 348, 760
FokI	GGATG	1 cut(s)	997
FspBI	CTAG	4 cut(s)	54, 101, 1038, 1053
GlaI	GCGC	1 cut(s)	1008
GsaI	CCCAGC	1 cut(s)	970
GsuI	CTGGAG	1 cut(s)	791
HaeII	RGCGCY	1 cut(s)	1010
HaeIII	GGCC	3 cut(s)	262, 315, 588
HapII	CCGG	2 cut(s)	557, 658
HhaI	GCGC	1 cut(s)	1009
Hin1II	CATG	3 cut(s)	150, 595, 877
Hin6I	GCGC	1 cut(s)	1007
HinP1I	GCGC	1 cut(s)	1007
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HindIII	AAGCTT	1 cut(s)	642
HinfI	GANTC	6 cut(s)	24, 82, 328, 560, 1025, 1044
HpaII	CCGG	2 cut(s)	557, 658
HphI	GGTGA	2 cut(s)	503, 853
Hpy166II	GTNNAC	7 cut(s)	71, 349, 423, 494, 541, 551, 761
Hpy188I	TCNGA	2 cut(s)	680, 1004
Hpy188III	TCNNGA	3 cut(s)	77, 253, 808
Hpy8I	GTNNAC	7 cut(s)	71, 349, 423, 494, 541, 551, 761
HpyAV	CCTTC	3 cut(s)	841, 921, 1044
HpyCH4III	ACNGT	5 cut(s)	280, 353, 427, 667, 859
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	6 cut(s)	15, 66, 137, 401, 515, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 63, 398, 1013
HpyF3I	CTNAG	3 cut(s)	43, 305, 373
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	3 cut(s)	150, 595, 877
HspAI	GCGC	1 cut(s)	1007
Kzo9I	GATC	3 cut(s)	150, 481, 675
LmnI	GCTCC	1 cut(s)	810
LweI	GCATC	3 cut(s)	346, 388, 979
MaeI	CTAG	4 cut(s)	54, 101, 1038, 1053
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	3 cut(s)	739, 785, 859
MalI	GATC	3 cut(s)	152, 483, 677
MboI	GATC	3 cut(s)	150, 481, 675
MboII	GAAGA	8 cut(s)	491, 641, 695, 698, 701, 704, 787, 907
MflI	RGATCY	3 cut(s)	150, 481, 675
MhlI	GDGCHC	1 cut(s)	807
MluCI	AATT	3 cut(s)	90, 444, 603
MlyI	GAGTC	2 cut(s)	33, 1019
MnlI	CCTC	7 cut(s)	196, 287, 305, 749, 860, 929, 1058
MseI	TTAA	2 cut(s)	432, 566
MslI	CAYNNNNRTG	1 cut(s)	506
MspI	CCGG	2 cut(s)	557, 658
MspR9I	CCNGG	2 cut(s)	245, 835
MvaI	CCWGG	2 cut(s)	245, 835
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	4 cut(s)	54, 63, 398, 1013
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	3 cut(s)	150, 481, 675
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	150, 595, 877
NlaIV	GGNNCC	3 cut(s)	152, 163, 589
NmuCI	GTSAC	3 cut(s)	739, 785, 859
PfeI	GAWTC	4 cut(s)	82, 328, 560, 1044
PleI	GAGTC	2 cut(s)	32, 1019
PpsI	GAGTC	2 cut(s)	32, 1019
PsiI	TTATAA	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	243, 833
PspFI	CCCAGC	1 cut(s)	966
PspGI	CCWGG	2 cut(s)	243, 833
PspN4I	GGNNCC	3 cut(s)	152, 163, 589
PspPI	GGNCC	1 cut(s)	587
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PsuI	RGATCY	3 cut(s)	150, 481, 675
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	432, 566
Sau3AI	GATC	3 cut(s)	150, 481, 675
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	2 cut(s)	33, 1019
ScrFI	CCNGG	2 cut(s)	245, 835
SduI	GDGCHC	1 cut(s)	807
SetI	ASST	7 cut(s)	21, 346, 646, 760, 792, 911, 1036
SfaNI	GCATC	3 cut(s)	346, 388, 979
SfcI	CTRYAG	2 cut(s)	349, 393
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	90, 444, 603
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	4 cut(s)	54, 101, 1038, 1053
StyD4I	CCNGG	2 cut(s)	243, 833
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	5 cut(s)	280, 353, 427, 667, 859
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	2 cut(s)	1023, 1042
TasI	AATT	3 cut(s)	90, 444, 603
TfiI	GAWTC	4 cut(s)	82, 328, 560, 1044
Tru1I	TTAA	2 cut(s)	432, 566
Tru9I	TTAA	2 cut(s)	432, 566
TscAI	CASTG	4 cut(s)	358, 394, 709, 862
TseFI	GTSAC	3 cut(s)	739, 785, 859
Tsp45I	GTSAC	3 cut(s)	739, 785, 859
TspDTI	ATGAA	2 cut(s)	212, 608
TspGWI	ACGGA	2 cut(s)	282, 650
TspRI	CASTG	4 cut(s)	358, 394, 709, 862
XapI	RAATTY	1 cut(s)	90
XmiI	GTMKAC	3 cut(s)	70, 348, 760
XspI	CTAG	4 cut(s)	54, 101, 1038, 1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.