Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8343513.1

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

34 .. 929

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8343513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgatcagctatttcgttgattacttggggggaatagagactttcccccatgaagggtatatccttgctgggaccttctttgcagcgaagctagttgagaccttaacaacccggcagtggtatcttggggtggacattttgggtatgcatgtaagatcagctctaacggcaatggtataccgaaagggactcaggctttccagctcagccaagcaaagtcacacaagtggagagattgttaactacatggctgttgatgtgcagagggtaggggactattcctggtatctccatgacatatggatgcttcctctgcaaattgttcttgcccttgcaattttatacaagaatgttggaattgcttctgttgctacattgattgccaccattatctccattgttcttactgttcctttggcaaagatacaagaagattatcaagacaagttgatgacggcaaaggatgaaagaatgaggaagacttctgagtgcctgcggaacatgagaattcttaagttgcaagcttgggaggacagataccgactgatgttagaggagatgcgtagtgtggagtttaagtatctacgcaaagccctctactcgcaagcttttatcacattcatgttctggagctctcctatatttgtttctgctgtcacttttggtacttctgtatttttgggtactcgtctcactgcaggaggaagagttacaggcagatgcaacaattgtcctgccacggggcgtcacaagcacgtcaatagaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004888 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008281 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0023052 GO:0030003 GO:0030004 GO:0030007 GO:0031090 GO:0032870 GO:0033993 GO:0038023 GO:0042221 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:0098588 GO:0098771 GO:0098805 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

256

Amino Acids

29.19

Weight (kDa)

9.55

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	745
AfaI	GTAC	2 cut(s)	667, 685
AfiI	CCNNNNNNNGG	4 cut(s)	53, 54, 117, 740
AflII	CTTAAG	1 cut(s)	512
AjiI	CACGTC	1 cut(s)	757
AjnI	CCWGG	1 cut(s)	281
AleI	CACNNNNGTG	1 cut(s)	225
AluBI	AGCT	7 cut(s)	9, 91, 161, 204, 524, 608, 633
AluI	AGCT	7 cut(s)	9, 91, 161, 204, 524, 608, 633
Alw21I	GWGCWC	1 cut(s)	635
Alw26I	GTCTC	3 cut(s)	32, 92, 695
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	507
Asp700I	GAANNNNTTC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	72
BaeI	ACNNNNGTAYC	2 cut(s)	657, 690
BanII	GRGCYC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	635
BbvI	GCAGC	1 cut(s)	95
BceAI	ACGGC	2 cut(s)	183, 471
BciT130I	CCWGG	1 cut(s)	283
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	3 cut(s)	32, 92, 695
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	696
BfrI	CTTAAG	1 cut(s)	512
BisI	GCNGC	1 cut(s)	84
BlpI	GCTNAGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	112, 283
Bme18I	GGWCC	1 cut(s)	72
BmgBI	CACGTC	1 cut(s)	757
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	2 cut(s)	112, 283
BmsI	GCATC	3 cut(s)	294, 549, 710
BpiI	GAAGAC	1 cut(s)	485
BpmI	CTGGAG	1 cut(s)	649
Bpu1102I	GCTNAGC	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	745
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	738
BsaXI	ACNNNNNCTCC	6 cut(s)	222, 252, 563, 593, 693, 723
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 54, 117, 740
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	2 cut(s)	309, 469
BseLI	CCNNNNNNNGG	4 cut(s)	53, 54, 117, 740
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	3 cut(s)	205, 219, 477
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	95
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	3 cut(s)	85, 201, 287
BslI	CCNNNNNNNGG	4 cut(s)	53, 54, 117, 740
BsmAI	GTCTC	3 cut(s)	32, 92, 695
BsmBI	CGTCTC	1 cut(s)	695
BsmFI	GGGAC	3 cut(s)	85, 201, 287
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	635
Bsp143I	GATC	2 cut(s)	3, 155
Bsp1720I	GCTNAGC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	496
BspCNI	CTCAG	3 cut(s)	204, 218, 478
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	700
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	2 cut(s)	3, 155
BssNAI	GTATAC	1 cut(s)	178
BssNI	GRCGYC	1 cut(s)	745
Bst1107I	GTATAC	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	700
BstACI	GRCGYC	1 cut(s)	745
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	494, 522, 606
BstDEI	CTNAG	3 cut(s)	191, 205, 486
BstDSI	CCRYGG	1 cut(s)	738
BstF5I	GGATG	2 cut(s)	309, 469
BstKTI	GATC	2 cut(s)	6, 158
BstMAI	GTCTC	3 cut(s)	32, 92, 695
BstMBI	GATC	2 cut(s)	3, 155
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 313, 368, 751
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	110, 281
BstSFI	CTRYAG	1 cut(s)	696
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	485
BstZ17I	GTATAC	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	738
BtrI	CACGTC	1 cut(s)	757
BtsCI	GGATG	2 cut(s)	309, 469
BtsI	GCAGTG	2 cut(s)	122, 693
BtsIMutI	CAGTG	2 cut(s)	122, 693
Cac8I	GCNNGC	3 cut(s)	494, 522, 606
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	2 cut(s)	666, 684
CviAII	CATG	6 cut(s)	50, 149, 247, 293, 502, 622
CviQI	GTAC	2 cut(s)	666, 684
DdeI	CTNAG	3 cut(s)	191, 205, 486
DpnI	GATC	2 cut(s)	5, 157
DpnII	GATC	2 cut(s)	3, 155
Eam1104I	CTCTTC	1 cut(s)	700
EarI	CTCTTC	1 cut(s)	700
Ecl136II	GAGCTC	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	635
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	281
EcoT22I	ATGCAT	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	635
Esp3I	CGTCTC	1 cut(s)	695
FaeI	CATG	6 cut(s)	53, 152, 250, 296, 505, 625
FaqI	GGGAC	3 cut(s)	85, 201, 287
FatI	CATG	6 cut(s)	49, 148, 246, 292, 501, 621
FauNDI	CATATG	1 cut(s)	299
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	316, 476
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	649
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	1 cut(s)	734
Hin1I	GRCGYC	1 cut(s)	745
Hin1II	CATG	6 cut(s)	53, 152, 250, 296, 505, 625
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	2 cut(s)	522, 606
HinfI	GANTC	1 cut(s)	189
HpaI	GTTAAC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	112
Hpy166II	GTNNAC	3 cut(s)	133, 178, 241
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	2 cut(s)	440, 628
Hpy8I	GTNNAC	3 cut(s)	133, 178, 241
HpyAV	CCTTC	2 cut(s)	47, 85
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	8 cut(s)	83, 148, 262, 316, 335, 520, 698, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 313, 368, 751
HpyF3I	CTNAG	3 cut(s)	191, 205, 486
HpySE526I	ACGT	1 cut(s)	756
Hsp92I	GRCGYC	1 cut(s)	745
Hsp92II	CATG	6 cut(s)	53, 152, 250, 296, 505, 625
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	3, 155
LmnI	GCTCC	1 cut(s)	630
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	3 cut(s)	294, 549, 710
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	4 cut(s)	218, 655, 709, 746
MalI	GATC	2 cut(s)	5, 157
MboI	GATC	2 cut(s)	3, 155
MboII	GAAGA	3 cut(s)	443, 490, 717
MfeI	CAATTG	1 cut(s)	727
MhlI	GDGCHC	1 cut(s)	635
MluCI	AATT	6 cut(s)	318, 336, 357, 507, 727, 766
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	7 cut(s)	258, 321, 468, 523, 547, 605, 695
Mph1103I	ATGCAT	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	5 cut(s)	104, 240, 513, 576, 769
MslI	CAYNNNNRTG	3 cut(s)	225, 302, 620
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	112, 283
MunI	CAATTG	1 cut(s)	727
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	4 cut(s)	167, 313, 368, 751
NciI	CCSGG	1 cut(s)	112
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	2 cut(s)	3, 155
NlaIII	CATG	6 cut(s)	53, 152, 250, 296, 505, 625
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	3 cut(s)	218, 655, 746
NsiI	ATGCAT	1 cut(s)	150
NspI	RCATGY	1 cut(s)	152
OliI	CACNNNNGTG	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	72
PspPPI	RGGWCCY	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	700
RsaI	GTAC	2 cut(s)	667, 685
RsaNI	GTAC	2 cut(s)	666, 684
RseI	CAYNNNNRTG	3 cut(s)	225, 302, 620
SacI	GAGCTC	1 cut(s)	635
SaqAI	TTAA	5 cut(s)	104, 240, 513, 576, 769
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	3, 155
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	2 cut(s)	112, 283
SduI	GDGCHC	1 cut(s)	635
SfaNI	GCATC	3 cut(s)	294, 549, 710
SfcI	CTRYAG	1 cut(s)	696
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	3 cut(s)	225, 302, 620
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	6 cut(s)	318, 336, 357, 507, 727, 766
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	635
StyD4I	CCNGG	2 cut(s)	110, 281
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	759
TasI	AATT	6 cut(s)	318, 336, 357, 507, 727, 766
Tru1I	TTAA	5 cut(s)	104, 240, 513, 576, 769
Tru9I	TTAA	5 cut(s)	104, 240, 513, 576, 769
TscAI	CASTG	2 cut(s)	122, 700
TseFI	GTSAC	3 cut(s)	218, 655, 746
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	3 cut(s)	218, 655, 746
TspDTI	ATGAA	3 cut(s)	66, 480, 610
TspRI	CASTG	2 cut(s)	122, 700
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.