Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

4509712 .. 4510613

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAAGTATATAGTTGGAAAGTATGGTAGCTCAAACATGTATTATGGTGAGAAGCTTGCCTTCATATTCTTTTTTGCAATGACTTTGGAATCAATTACTCAAAGACAACTGTCTTTTGGTGCTCGACAAATTGGTCTACAAGTAAGAGCAGCTCTGACCGCCTTAATCTACAAGAAGTGCATCTCGATTAAGTACTTTGGTCCAAGCAATGGTAAAGTTGTAAACTTAATCAACATGGATGTAGAAGTGGTTGGAGAATTCTTCTCTTCTATTCATGGAGTTTGGGTGCTTCCCCTTCAAGTGTTTTTGGCATTGGTTATCTTGTATGGAAATCTCGGTGCTGCCCCCCTTCTCTGGCAGCCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

122

Amino Acids

13.68

Weight (kDa)

9.48

Isoelectric Point (pI)

22.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	8 - 113	4.4e-06	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	132
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	136
AciI	CCGC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	209, 354
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	299
AluBI	AGCT	3 cut(s)	30, 55, 152
AluI	AGCT	3 cut(s)	30, 55, 152
Alw21I	GWGCWC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	149, 341, 358
ApoI	RAATTY	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	161, 328
BisI	GCNGC	3 cut(s)	150, 342, 359
BlsI	GCNGC	3 cut(s)	151, 343, 360
BmcAI	AGTACT	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmsI	GCATC	1 cut(s)	189
BoxI	GACNNNNGTC	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 354
Bse3DI	GCAATG	2 cut(s)	84, 214
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	209, 354
BseMI	GCAATG	2 cut(s)	84, 214
BseXI	GCAGC	2 cut(s)	161, 328
BsiHKAI	GWGCWC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	209, 354
Bsp1286I	GDGCHC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	84, 214
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	40
BstPAI	GACNNNNGTC	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	161, 328
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	37, 235, 275
CviJI	RGCY	4 cut(s)	30, 55, 152, 361
CviKI_1	RGCY	4 cut(s)	30, 55, 152, 361
CviQI	GTAC	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	132
DseDI	GACNNNNNNGTC	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	257
FaeI	CATG	3 cut(s)	40, 238, 278
FaiI	YATR	9 cut(s)	9, 11, 24, 38, 45, 65, 236, 276, 327
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	3 cut(s)	36, 234, 274
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	150, 342, 359
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	3 cut(s)	150, 342, 359
GluI	GCNGC	3 cut(s)	150, 342, 359
Hin1II	CATG	3 cut(s)	40, 238, 278
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	137, 223
Hpy188I	TCNGA	2 cut(s)	156, 368
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	2 cut(s)	137, 223
HpyAV	CCTTC	3 cut(s)	70, 305, 359
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	77, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	40, 238, 278
LpnPI	CCDG	1 cut(s)	340
Lsp1109I	GCAGC	2 cut(s)	161, 328
LweI	GCATC	1 cut(s)	189
MboII	GAAGA	2 cut(s)	253, 258
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	3 cut(s)	93, 129, 257
MmeI	TCCRAC	1 cut(s)	232
MseI	TTAA	3 cut(s)	164, 189, 227
MwoI	GCNNNNNNNGC	1 cut(s)	158
NlaIII	CATG	3 cut(s)	40, 238, 278
NspI	RCATGY	1 cut(s)	40
PciI	ACATGT	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	151, 343, 360
PscI	ACATGT	1 cut(s)	36
PshAI	GACNNNNGTC	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SaqAI	TTAA	3 cut(s)	164, 189, 227
SatI	GCNGC	3 cut(s)	150, 342, 359
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	3 cut(s)	32, 57, 154
SfaNI	GCATC	1 cut(s)	189
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	3 cut(s)	93, 129, 257
SsiI	CCGC	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	124, 185
TasI	AATT	3 cut(s)	93, 129, 257
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	164, 189, 227
Tru9I	TTAA	3 cut(s)	164, 189, 227
TseI	GCWGC	3 cut(s)	149, 341, 358
TspDTI	ATGAA	3 cut(s)	17, 52, 263
Van91I	CCANNNNNTGG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	136
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.