Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002271.1

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Reverse (-)

80401 .. 81003

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002271.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgggcgacgtgagtttgaatatgaggggctatgctttagtttctgcctttttggtggcaaagctcgtggagtggctctctcagaggcattggttctttagggtgcagcagataggagtaagaataagagctgtactggttgccatgatctataataaggggttgaccctttcttgccagtcgaaggaatgccacactagtggtgagattatcaatcttatgactgttgatgttgagaggattggtgacttcacttggtacatgcatgacccatggatgatcgttcttcaagttgctttatccctcttaattttgtataaaaatcttggccttgttgcaattgcgactttagttgcaacaatagttgttatgttggcaaatgttcctttggggaaattgcaagagaagtttcaggacaagttaatggtgtcaaaggacagaaggatgaaggcaacatcggagattttaaggaacatgtggattctcaagctgcaggcatgggagatgaagtttttgtctaagattattgacctcaggaagactgagacaagatggttacgaaagtttgtttatacttcggccatgaccacatttgtcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

200

Amino Acids

23.24

Weight (kDa)

9.88

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	579
AfaI	GTAC	2 cut(s)	135, 260
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	2 cut(s)	19, 290
AhlI	ACTAGT	1 cut(s)	197
AjiI	CACGTC	1 cut(s)	10
AleI	CACNNNNGTG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	64, 131, 490
AluI	AGCT	3 cut(s)	64, 131, 490
Alw26I	GTCTC	1 cut(s)	539
AoxI	GGCC	2 cut(s)	328, 579
ApeKI	GCWGC	2 cut(s)	106, 490
AsuHPI	GGTGA	2 cut(s)	215, 257
AxyI	CCTNAGG	1 cut(s)	533
BauI	CACGAG	1 cut(s)	65
BbsI	GAAGAC	2 cut(s)	545, 589
BbvI	GCAGC	2 cut(s)	118, 477
BccI	CCATC	1 cut(s)	546
BcoDI	GTCTC	1 cut(s)	539
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	2 cut(s)	198, 601
BfmI	CTRYAG	1 cut(s)	491
BisI	GCNGC	2 cut(s)	107, 491
BlsI	GCNGC	2 cut(s)	108, 492
BmgBI	CACGTC	1 cut(s)	10
BpiI	GAAGAC	2 cut(s)	545, 589
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpuEI	CTTGAG	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	141, 178
Bse21I	CCTNAGG	1 cut(s)	533
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	282, 450
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	3 cut(s)	95, 534, 547
BseNI	ACTGG	2 cut(s)	141, 178
BseXI	GCAGC	2 cut(s)	118, 477
BsgI	GTGCAG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	330, 581
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	539
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	330, 581
Bsp143I	GATC	2 cut(s)	147, 279
Bsp19I	CCATGG	1 cut(s)	272
BspANI	GGCC	2 cut(s)	330, 581
BspCNI	CTCAG	3 cut(s)	94, 535, 546
BspMAI	CTGCAG	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	141, 178
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	2 cut(s)	147, 279
BssSI	CACGAG	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	4 cut(s)	81, 519, 533, 543
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	282, 450
BstKTI	GATC	2 cut(s)	150, 282
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	2 cut(s)	147, 279
BstNSI	RCATGY	2 cut(s)	265, 478
BstSFI	CTRYAG	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	118, 477
BstV2I	GAAGAC	2 cut(s)	545, 589
BstXI	CCANNNNNNTGG	1 cut(s)	200
Bsu36I	CCTNAGG	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	330, 581
BtgI	CCRYGG	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	282, 450
Cac8I	GCNNGC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	134, 259
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	7 cut(s)	145, 262, 266, 273, 475, 498, 583
CviJI	RGCY	7 cut(s)	30, 64, 76, 131, 330, 490, 581
CviKI_1	RGCY	7 cut(s)	30, 64, 76, 131, 330, 490, 581
CviQI	GTAC	2 cut(s)	134, 259
DdeI	CTNAG	4 cut(s)	81, 519, 533, 543
DpnI	GATC	2 cut(s)	149, 281
DpnII	GATC	2 cut(s)	147, 279
EaeI	YGGCCR	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	272
EcoT22I	ATGCAT	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	7 cut(s)	148, 265, 269, 276, 478, 501, 586
FatI	CATG	7 cut(s)	144, 261, 265, 272, 474, 497, 582
Fnu4HI	GCNGC	2 cut(s)	107, 491
FokI	GGATG	2 cut(s)	289, 457
Fsp4HI	GCNGC	2 cut(s)	107, 491
FspBI	CTAG	2 cut(s)	198, 601
GluI	GCNGC	2 cut(s)	107, 491
HaeIII	GGCC	2 cut(s)	330, 581
Hin1II	CATG	7 cut(s)	148, 265, 269, 276, 478, 501, 586
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	481
HphI	GGTGA	2 cut(s)	215, 257
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	2 cut(s)	84, 460
Hpy188III	TCNNGA	2 cut(s)	413, 535
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	178, 435, 442
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	6 cut(s)	106, 265, 338, 356, 400, 493
HpyF3I	CTNAG	4 cut(s)	81, 519, 533, 543
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	7 cut(s)	148, 265, 269, 276, 478, 501, 586
Kzo9I	GATC	2 cut(s)	147, 279
LpnPI	CCDG	5 cut(s)	122, 191, 398, 479, 520
Lsp1109I	GCAGC	2 cut(s)	118, 477
MaeI	CTAG	2 cut(s)	198, 601
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	245, 555
MalI	GATC	2 cut(s)	149, 281
MboI	GATC	2 cut(s)	147, 279
MboII	GAAGA	3 cut(s)	278, 550, 589
MfeI	CAATTG	1 cut(s)	339
MluCI	AATT	3 cut(s)	309, 339, 395
MnlI	CCTC	5 cut(s)	18, 78, 231, 314, 542
Mph1103I	ATGCAT	1 cut(s)	267
MseI	TTAA	3 cut(s)	308, 422, 467
MslI	CAYNNNNRTG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	147, 279
NlaIII	CATG	7 cut(s)	148, 265, 269, 276, 478, 501, 586
NmuCI	GTSAC	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	267
NspI	RCATGY	2 cut(s)	265, 478
OliI	CACNNNNGTG	1 cut(s)	198
PciI	ACATGT	1 cut(s)	474
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	108, 492
PscI	ACATGT	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	495
RsaI	GTAC	2 cut(s)	135, 260
RsaNI	GTAC	2 cut(s)	134, 259
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	308, 422, 467
SatI	GCNGC	2 cut(s)	107, 491
Sau3AI	GATC	2 cut(s)	147, 279
SetI	ASST	5 cut(s)	12, 66, 133, 492, 534
SfcI	CTRYAG	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	3 cut(s)	309, 339, 395
SspMI	CTAG	2 cut(s)	198, 601
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	182
TasI	AATT	3 cut(s)	309, 339, 395
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	3 cut(s)	308, 422, 467
Tru9I	TTAA	3 cut(s)	308, 422, 467
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	106, 490
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	461, 521
XceI	RCATGY	2 cut(s)	265, 478
XspI	CTAG	2 cut(s)	198, 601
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.