Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Forward (+)

54188609 .. 54189583

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAAGGTGGGAGTCTGCGGTTCTGTTGGCTCAGACGACCTTTCAGTGCTGTAGATGCACATACAGGGACACATTTGTTCACGAAATGTATCTTGCAAGAATTGTCTGAAAAAACCGTAATCTATGCTACTCACCAACTAGAATTTTTGGAAGCAGCAGACTATGTTTTGGTAGTTAAAGATGGTCAAATTGCTCAAGCCGGCACTTACGAGAAGTTGATTGAAGATCCTAATGGCGAACTTGTCAGACAAATGACTGCACATAGAAAATCTCTACACCAAGTTCACAGCAGTCTACCGGATTCTTTAAGCAACACCACAACTACTGGCCCCATGAAAAATGGAATTACTGAAAGAGTATTGGATATTGAAGATGATAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

128

Amino Acids

14.37

Weight (kDa)

5.82

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	295
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	224, 371
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	331
BmsI	GCATC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	201, 299
BslFI	GGGAC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	331
BspPI	GGATC	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	200
BssMI	GATC	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	32
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	329
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	3 cut(s)	31, 200, 330
CviKI_1	RGCY	3 cut(s)	31, 200, 330
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
FaeI	CATG	1 cut(s)	337
FaiI	YATR	5 cut(s)	63, 126, 165, 264, 335
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	1 cut(s)	333
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	2 cut(s)	201, 299
Hin1II	CATG	1 cut(s)	337
HinfI	GANTC	2 cut(s)	13, 302
HpaII	CCGG	2 cut(s)	201, 299
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	3 cut(s)	81, 286, 296
Hpy188I	TCNGA	3 cut(s)	35, 109, 248
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	3 cut(s)	81, 286, 296
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	4 cut(s)	4, 59, 97, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	337
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	4 cut(s)	51, 214, 312, 312
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	140
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	236, 383
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	4 cut(s)	101, 143, 189, 345
MlyI	GAGTC	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	200
MseI	TTAA	2 cut(s)	177, 308
MspI	CCGG	2 cut(s)	201, 299
MwoI	GCNNNNNNNGC	1 cut(s)	56
NaeI	GCCGGC	1 cut(s)	202
NdeII	GATC	1 cut(s)	226
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	1 cut(s)	331
PdiI	GCCGGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	177, 308
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	22
SetI	ASST	2 cut(s)	10, 43
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	4 cut(s)	101, 143, 189, 345
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	4 cut(s)	101, 143, 189, 345
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	177, 308
Tru9I	TTAA	2 cut(s)	177, 308
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	295
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.