Rmu_sc0002521.1_g000013

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002521.1
Physical Location & Seq
Forward (+)
28468 .. 28803
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002521.1_g000013.1.cds

Sequence Viewer

Length: 336 bp
atgactgttgatgttgagaggattggtgactgcttcacttggtacatacatgacctatggatgatcgttcctcaagttgctttagccctcttaattttgtataaaaatcttggccttgctgcaattgcaactttagttgcaacaatagttgttatgttggaaaatgttcctttagggaaattgcaagagaagtttcaggacaagttaatggtgtcaaagggcagaaggatgaaggcaacatcgaagattttaaggaacatacggattctcaagctgcaggcatgggagatgaagtttttgtctaagattattgacctcaggaagattgagacatga

Protein Analysis

111

Amino Acids

12.83

Weight (kDa)

9.81

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 44
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 323
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 119, 274
Asp700I GAANNNNTTC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 38
AxyI CCTNAGG 1 cut(s) 317
BbvI GCAGC 2 cut(s) 106, 261
BcoDI GTCTC 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 120, 275
BlsI GCNGC 2 cut(s) 121, 276
BpuEI CTTGAG 2 cut(s) 57, 254
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bse21I CCTNAGG 1 cut(s) 317
BseGI GGATG 2 cut(s) 66, 234
BseMII CTCAG 1 cut(s) 331
BseXI GCAGC 2 cut(s) 106, 261
BshFI GGCC 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 323
BsnI GGCC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 63
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 330
BspMAI CTGCAG 1 cut(s) 279
BssMI GATC 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 303, 317
BstF5I GGATG 2 cut(s) 66, 234
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 106, 261
Bsu36I CCTNAGG 1 cut(s) 317
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 66, 234
Cac8I GCNNGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 50, 282, 333
CviJI RGCY 3 cut(s) 86, 114, 274
CviKI_1 RGCY 3 cut(s) 86, 114, 274
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 2 cut(s) 303, 317
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eco81I CCTNAGG 1 cut(s) 317
FaeI CATG 3 cut(s) 53, 285, 336
FaiI YATR 8 cut(s) 47, 51, 58, 102, 155, 260, 283, 334
FatI CATG 3 cut(s) 49, 281, 332
Fnu4HI GCNGC 2 cut(s) 120, 275
FokI GGATG 2 cut(s) 73, 241
Fsp4HI GCNGC 2 cut(s) 120, 275
GluI GCNGC 2 cut(s) 120, 275
HaeIII GGCC 1 cut(s) 114
Hin1II CATG 3 cut(s) 53, 285, 336
HinfI GANTC 1 cut(s) 265
HphI GGTGA 1 cut(s) 38
Hpy188III TCNNGA 2 cut(s) 197, 319
HpyAV CCTTC 2 cut(s) 219, 226
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 5 cut(s) 122, 128, 140, 184, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 303, 317
Hsp92II CATG 3 cut(s) 53, 285, 336
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 3 cut(s) 182, 263, 304
Lsp1109I GCAGC 2 cut(s) 106, 261
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 256, 334
MfeI CAATTG 1 cut(s) 123
MluCI AATT 3 cut(s) 93, 123, 179
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 4 cut(s) 12, 81, 98, 326
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 3 cut(s) 92, 206, 251
MunI CAATTG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 63
NlaIII CATG 3 cut(s) 53, 285, 336
NmuCI GTSAC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 2 cut(s) 121, 276
PstI CTGCAG 1 cut(s) 279
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 3 cut(s) 92, 206, 251
SatI GCNGC 2 cut(s) 120, 275
Sau3AI GATC 1 cut(s) 63
SetI ASST 3 cut(s) 57, 276, 318
SfcI CTRYAG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 72, 269
SmoI CTYRAG 2 cut(s) 72, 269
Sse9I AATT 3 cut(s) 93, 123, 179
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 1 cut(s) 242
TasI AATT 3 cut(s) 93, 123, 179
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 3 cut(s) 92, 206, 251
Tru9I TTAA 3 cut(s) 92, 206, 251
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 2 cut(s) 119, 274
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 245, 305
TspGWI ACGGA 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.