Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001408

Physical Location & Seq

Genomic Coordinates Reverse (-)

19329068 .. 19329787

Gene Structure 720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1118700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCCTTCATTAATGTTGCAGAAGGTAATGCAGCTTTTAAATACGAGGGTTATGCACTAACTCTAGGTCTCTTCATTGTGAAAATCTTAGAGTCATTGTCGGAGAGGCAATGGCACTTCAGAACTAGATTGATTGGGCTCCAAGTGAGATCAGTGGTTTCTGCAGCAATATATCAGAAGCAACTACGACTCTCAAATTCGGCCAAGATGACTCACTCTCCTGGGGAGATAGTGAATTATGTAGCGGTGGATGCTTACAAAATTGGCGAATTTCCATTCTGGTTTCATCAGTTATGGTCCACAAGCCTTCAGCTGTGTCTTTCATTACTTATTGTTTACTTCTCTGTTGGTCTGGCAACCATTGCAGCTCTAACTGTACTTATAGTGACTGTGGTGGCAAGCTATCCGTTAAGGATGTTGCAGCACGAGTACCAAAAGAAGCTAATGGCAGCACAAAATAGGAGGCTGAAGGCTATTGCCGAAGCACTAACGAATATGAAGATCTTGAAGCTGTATTCTTGGGAGACAAATTTCAAGAAGGTTATAGAAGGGTTAAGAACAGAAGAAATGAAATGGTTAACTCAGGTATTGAGACAAAAGGGGTATTATACTGTTCTGTTTTGGTCATCTCCTATTTTGGTCGCTGCAGTTACTTTCTGTTTTGGTCATCTCCTATTCTTGGATTTACACTCTCATCTGTTAATGTTTTTACATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

240

Amino Acids

27.52

Weight (kDa)

9.62

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	31 - 226	1.2e-23	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24630
malus_domestica	MD13G1109600.v1.1 MD13G1110900.v1.1 MD14G1118700.v1.1 MD16G1109500.v1.1
prunus_persica	Prupe.1G235800_v2.0.a1 Prupe.1G236100_v2.0.a1
pyrus_communis	pycom11g17660 pycom13g09660
rosa_chinensis	RchiOBHm_Chr2g0131921 RchiOBHm_Chr4g0431141 RchiOBHm_Chr4g0431381 RchiOBHm_Chr4g0431551 RchiOBHm_Chr4g0431711 RchiOBHm_Chr5g0037421 RchiOBHm_Chr6g0306331
rosa_laevigata	RLG00000006895 RLG00000010802
rosa_multiflora	Rmu_co8343513.1_g000001 Rmu_sc0002271.1_g000023 Rmu_sc0002521.1_g000013 Rmu_sc0003473.1_g000005 Rmu_sc0005185.1_g000002 Rmu_sc0005258.1_g000003 Rmu_sc0013042.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259720 Rroxscaffold_5G00372860 Rroxscaffold_5G00372880 Rroxscaffold_5G00372890 Rroxscaffold_5G00372970 Rroxscaffold_5G00373130 Rroxscaffold_7G00161860 Rroxscaffold_7G00161870
rosa_rugosa	Rorug04G0248700 Rorug04G0250100.1 Rorug04G0251800 Rorug04G0251800 Rorug04G0251900 Rorug04G0252000 Rorug04G0252100
rosa_samantha	Rh4AG308400 Rh4BG312300 Rh4BG312400 Rh4BG313800 Rh4BG316200 Rh4CG328600 Rh4DG308800 Rh4DG311000
rosa_wichuraiana	Rw4G026510 Rw4G026750 Rw4G026820 Rw5G016080 Rw6G040190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	3 cut(s)	196, 269, 529
AcuI	CTGAAG	3 cut(s)	103, 293, 488
AfaI	GTAC	2 cut(s)	378, 431
AfiI	CCNNNNNNNGG	1 cut(s)	679
AgsI	TTSAA	2 cut(s)	508, 535
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	6 cut(s)	35, 313, 368, 402, 442, 511
AluI	AGCT	6 cut(s)	35, 313, 368, 402, 442, 511
Alw26I	GTCTC	3 cut(s)	74, 518, 586
AoxI	GGCC	2 cut(s)	3, 201
ApeKI	GCWGC	6 cut(s)	32, 164, 365, 421, 449, 644
ApoI	RAATTY	3 cut(s)	196, 269, 529
AseI	ATTAAT	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	425
BbvI	GCAGC	6 cut(s)	44, 176, 377, 433, 461, 631
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	3 cut(s)	74, 518, 586
BfaI	CTAG	3 cut(s)	65, 126, 718
BfmI	CTRYAG	2 cut(s)	162, 645
BglII	AGATCT	1 cut(s)	501
BisI	GCNGC	6 cut(s)	33, 165, 366, 422, 450, 645
BlsI	GCNGC	6 cut(s)	34, 166, 367, 423, 451, 646
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse3DI	GCAATG	2 cut(s)	116, 360
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	256, 420
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMI	GCAATG	2 cut(s)	116, 360
BseMII	CTCAG	1 cut(s)	596
BseXI	GCAGC	6 cut(s)	44, 176, 377, 433, 461, 631
BshFI	GGCC	2 cut(s)	5, 203
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	3 cut(s)	74, 518, 586
BsnI	GGCC	2 cut(s)	5, 203
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	149, 501
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	2 cut(s)	5, 203
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	1 cut(s)	140
BspMAI	CTGCAG	2 cut(s)	166, 649
BspTNI	GGTCTC	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	116, 360
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	149, 501
BssSI	CACGAG	1 cut(s)	425
Bst2BI	CACGAG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	376, 391, 613
Bst6I	CTCTTC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	2 cut(s)	88, 582
BstF5I	GGATG	2 cut(s)	256, 420
BstKTI	GATC	2 cut(s)	152, 504
BstMAI	GTCTC	3 cut(s)	74, 518, 586
BstMBI	GATC	2 cut(s)	149, 501
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 362
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	2 cut(s)	162, 645
BstV1I	GCAGC	6 cut(s)	44, 176, 377, 433, 461, 631
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	5, 203
BtsCI	GGATG	2 cut(s)	256, 420
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	377, 430
CviQI	GTAC	2 cut(s)	377, 430
DdeI	CTNAG	2 cut(s)	88, 582
DpnI	GATC	2 cut(s)	151, 503
DpnII	GATC	2 cut(s)	149, 501
DraI	TTTAAA	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	297
Eco57I	CTGAAG	3 cut(s)	103, 293, 488
EcoRII	CCWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	141
FaiI	YATR	8 cut(s)	54, 172, 240, 295, 383, 497, 545, 609
Fnu4HI	GCNGC	6 cut(s)	33, 165, 366, 422, 450, 645
FokI	GGATG	2 cut(s)	263, 427
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	6 cut(s)	33, 165, 366, 422, 450, 645
FspBI	CTAG	3 cut(s)	65, 126, 718
GluI	GCNGC	6 cut(s)	33, 165, 366, 422, 450, 645
HaeIII	GGCC	2 cut(s)	5, 203
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	3 cut(s)	92, 189, 211
HpaI	GTTAAC	1 cut(s)	579
Hpy166II	GTNNAC	3 cut(s)	300, 337, 579
Hpy188I	TCNGA	3 cut(s)	103, 122, 177
Hpy188III	TCNNGA	2 cut(s)	505, 535
Hpy8I	GTNNAC	3 cut(s)	300, 337, 579
HpyAV	CCTTC	6 cut(s)	16, 17, 317, 463, 532, 542
HpyCH4III	ACNGT	3 cut(s)	376, 391, 613
HpyCH4V	TGCA	7 cut(s)	20, 32, 56, 164, 365, 421, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 362
HpyF3I	CTNAG	2 cut(s)	88, 582
KspAI	GTTAAC	1 cut(s)	579
Kzo9I	GATC	2 cut(s)	149, 501
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	5 cut(s)	207, 234, 265, 338, 569
Lsp1109I	GCAGC	6 cut(s)	44, 176, 377, 433, 461, 631
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	65, 126, 718
MaeIII	GTNAC	2 cut(s)	385, 649
MalI	GATC	2 cut(s)	151, 503
MboI	GATC	2 cut(s)	149, 501
MboII	GAAGA	3 cut(s)	64, 511, 575
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	5 cut(s)	196, 235, 261, 269, 529
MlyI	GAGTC	3 cut(s)	101, 183, 205
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	3 cut(s)	40, 99, 456
MseI	TTAA	6 cut(s)	12, 39, 410, 554, 578, 701
MspA1I	CMGCKG	1 cut(s)	313
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	251, 362
NdeII	GATC	2 cut(s)	149, 501
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	385
PkrI	GCNGC	6 cut(s)	34, 166, 367, 423, 451, 646
PleI	GAGTC	3 cut(s)	100, 183, 205
PpsI	GAGTC	3 cut(s)	100, 183, 205
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	297
PstI	CTGCAG	2 cut(s)	166, 649
PsuI	RGATCY	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	2 cut(s)	378, 431
RsaNI	GTAC	2 cut(s)	377, 430
SaqAI	TTAA	6 cut(s)	12, 39, 410, 554, 578, 701
SatI	GCNGC	6 cut(s)	33, 165, 366, 422, 450, 645
Sau3AI	GATC	2 cut(s)	149, 501
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	3 cut(s)	101, 183, 205
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	2 cut(s)	162, 645
SinI	GGWCC	1 cut(s)	297
Sse9I	AATT	5 cut(s)	196, 235, 261, 269, 529
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	3 cut(s)	65, 126, 718
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	376, 391, 613
TasI	AATT	5 cut(s)	196, 235, 261, 269, 529
TatI	WGTACW	1 cut(s)	376
Tru1I	TTAA	6 cut(s)	12, 39, 410, 554, 578, 701
Tru9I	TTAA	6 cut(s)	12, 39, 410, 554, 578, 701
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	6 cut(s)	32, 164, 365, 421, 449, 644
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	5 cut(s)	64, 275, 312, 512, 584
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	297
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	3 cut(s)	196, 269, 529
XspI	CTAG	3 cut(s)	65, 126, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.