Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001760

Physical Location & Seq

Genomic Coordinates Reverse (-)

21413082 .. 21413973

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTTTCAGGTGAATCAAACCCTGTTTGAAGAAATTACAGCAATTAACCACCAACTAATAGACACTGTATTAGATGTCAGTGACGAAGATACCCCTCCAACAGTAGTCTCAGCTCAATTTAGAGGTGGTCAAGGAACCATTGTCCGGTGCTCCTTCATTCCCGTGATCATCAATCCCAATCTGAGGTCACAGCACCCTTCAGCTCAAATGCTTCCAATCCAGCCCTTACGATTGCTTGTTCCTGCAAATTATCCATTGTGCTCTCCCATATTTCTAGACAAATTGAGAGTGGAAGTCGGTGATGAGCTAGAAGATCTTTCAGCAAAGGTAAAATCAAAGCTGAATATGTCGCTCCGGAGGCTGACGGATCCCTTGTCACTTGGGGAGATAGCAAGGACGTGGGACATGTGTGTGCGAGCGGTTGTCGCAGAATATGCAGAGCAGAATGGGGGAGGAAACTTGAGTTCCAAGTATGGAGGGTGGGAAGACTGTATGAGTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

169

Amino Acids

18.54

Weight (kDa)

4.87

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med15_C	PF21539	71 - 139	1.7e-08	ARC105/Med15 mediator subunit C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001760)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12010 FvH4_7g04352
malus_domestica	MD02G1272500.v1.1 MD02G1272700.v1.1 MD02G1272800.v1.1 MD03G1032600.v1.1 MD07G1041400.v1.1
prunus_persica	Prupe.2G048200_v2.0.a1 Prupe.2G048200_v2.0.a1 Prupe.6G027400_v2.0.a1 Prupe.6G027400_v2.0.a1 Prupe.6G027400_v2.0.a1 Prupe.6G027400_v2.0.a1
pyrus_communis	pycom02g23330 pycom02g23360 pycom03g02610 pycom07g02890 pycom07g02900
rosa_chinensis	RchiOBHm_Chr4g0390581 RchiOBHm_Chr4g0409611
rosa_laevigata	RLG00000008544 RLG00000008548 RLG00000029895
rosa_multiflora	Rmu_co8074362.1_g000001 Rmu_sc0000652.1_g000023 Rmu_sc0001380.1_g000009 Rmu_sc0008771.1_g000002 Rmu_sc0028975.1_g000001 Rmu_sc0041275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321130 Rroxscaffold_5G00354140
rosa_rugosa	Rorug01G0079300.1 Rorug04G0095100 Rorug04G0095400
rosa_samantha	Rh1AG097800 Rh1AG097900 Rh1BG077900 Rh1DG058200 Rh1DG101100 Rh1DG101200 Rh4AG157100 Rh4BG156200 Rh4BG156500 Rh4CG036300 Rh4CG167000 Rh4DG150300 Rh4DG150700
rosa_wichuraiana	Rw4G012950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	419
AccIII	TCCGGA	1 cut(s)	354
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	2 cut(s)	362, 375
AcuI	CTGAAG	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	144, 183
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	29
AjiI	CACGTC	1 cut(s)	399
AluBI	AGCT	4 cut(s)	113, 203, 307, 340
AluI	AGCT	4 cut(s)	113, 203, 307, 340
Alw21I	GWGCWC	2 cut(s)	152, 263
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	362, 375
Aor13HI	TCCGGA	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	500
AsuHPI	GGTGA	2 cut(s)	22, 311
BamHI	GGATCC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	2 cut(s)	152, 263
BbvI	GCAGC	1 cut(s)	487
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	275, 308
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
BmgBI	CACGTC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	136, 369
BpiI	GAAGAC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	481
BsaWI	WCCGGW	2 cut(s)	144, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 183
BseAI	TCCGGA	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	144, 183
BseMII	CTCAG	2 cut(s)	123, 173
BseXI	GCAGC	1 cut(s)	487
BsiHKAI	GWGCWC	2 cut(s)	152, 263
BsiSI	CCGG	2 cut(s)	145, 355
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	144, 183
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	152, 263
Bsp13I	TCCGGA	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	165, 313, 367
BspACI	CCGC	1 cut(s)	419
BspCNI	CTCAG	2 cut(s)	122, 174
BspEI	TCCGGA	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	136, 369
BspPI	GGATC	2 cut(s)	362, 375
BsrBI	CCGCTC	1 cut(s)	419
BssMI	GATC	3 cut(s)	165, 313, 367
Bst4CI	ACNGT	3 cut(s)	67, 103, 491
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	109, 182
BstKTI	GATC	3 cut(s)	168, 316, 370
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	3 cut(s)	165, 313, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 425, 434
BstNSI	RCATGY	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	2 cut(s)	313, 367
BstYI	RGATCY	2 cut(s)	313, 367
BtrI	CACGTC	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	63, 85
Cac8I	GCNNGC	1 cut(s)	417
CviAII	CATG	1 cut(s)	406
CviJI	RGCY	6 cut(s)	113, 203, 223, 307, 340, 361
CviKI_1	RGCY	6 cut(s)	113, 203, 223, 307, 340, 361
DdeI	CTNAG	2 cut(s)	109, 182
DpnI	GATC	3 cut(s)	167, 315, 369
DpnII	GATC	3 cut(s)	165, 313, 367
Eco57I	CTGAAG	1 cut(s)	183
FaeI	CATG	1 cut(s)	409
FaiI	YATR	6 cut(s)	269, 347, 407, 435, 474, 494
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	2 cut(s)	275, 308
GluI	GCNGC	1 cut(s)	501
HapII	CCGG	2 cut(s)	145, 355
Hin1II	CATG	1 cut(s)	409
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	145, 355
HphI	GGTGA	2 cut(s)	22, 311
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	275, 355
HpyAV	CCTTC	2 cut(s)	163, 207
HpyCH4III	ACNGT	3 cut(s)	67, 103, 491
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	2 cut(s)	245, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 425, 434
HpyF3I	CTNAG	2 cut(s)	109, 182
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	1 cut(s)	409
Kpn2I	TCCGGA	1 cut(s)	354
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	165, 313, 367
LmnI	GCTCC	2 cut(s)	155, 357
LpnPI	CCDG	5 cut(s)	35, 158, 233, 255, 368
Lsp1109I	GCAGC	1 cut(s)	487
MaeI	CTAG	2 cut(s)	275, 308
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	3 cut(s)	80, 186, 375
MalI	GATC	3 cut(s)	167, 315, 369
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	3 cut(s)	165, 313, 367
MboII	GAAGA	4 cut(s)	41, 98, 323, 497
MflI	RGATCY	2 cut(s)	313, 367
MhlI	GDGCHC	2 cut(s)	152, 263
MluCI	AATT	5 cut(s)	33, 42, 116, 247, 281
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	6 cut(s)	105, 116, 177, 351, 446, 470
MroI	TCCGGA	1 cut(s)	354
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	2 cut(s)	161, 410
MspI	CCGG	2 cut(s)	145, 355
MwoI	GCNNNNNNNGC	3 cut(s)	358, 425, 434
NdeII	GATC	3 cut(s)	165, 313, 367
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	2 cut(s)	136, 369
NmuCI	GTSAC	3 cut(s)	80, 186, 375
NspI	RCATGY	1 cut(s)	409
PciI	ACATGT	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	502
PscI	ACATGT	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	136, 369
PsuI	RGATCY	2 cut(s)	313, 367
RseI	CAYNNNNRTG	2 cut(s)	161, 410
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	3 cut(s)	165, 313, 367
SduI	GDGCHC	2 cut(s)	152, 263
SetI	ASST	9 cut(s)	12, 115, 127, 188, 205, 309, 330, 342, 401
SmiMI	CAYNNNNRTG	2 cut(s)	161, 410
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	5 cut(s)	33, 42, 116, 247, 281
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	2 cut(s)	275, 308
TaaI	ACNGT	3 cut(s)	67, 103, 491
TaiI	ACGT	1 cut(s)	401
TasI	AATT	5 cut(s)	33, 42, 116, 247, 281
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	2 cut(s)	70, 85
TseFI	GTSAC	3 cut(s)	80, 186, 375
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	3 cut(s)	80, 186, 375
TspDTI	ATGAA	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	2 cut(s)	70, 85
XbaI	TCTAGA	1 cut(s)	274
XceI	RCATGY	1 cut(s)	409
XspI	CTAG	2 cut(s)	275, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.