Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008771.1

Orthogroup ID

OG0001760

Physical Location & Seq

Genomic Coordinates Forward (+)

4430 .. 5176

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008771.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgtgtgaaaagaagaatcttccaacgcttcctaaacctaaatctcctgtcatttcaagaagctcaccgaatgctggaatttcttctttggctcccttagcttcagcacctataccaggggattctgagaaacctatgtctgaaacttcgttggtttcaaatgcagtaaatattggagctcaacaagcacataccaatccagaagccatcgatccatttcaacttcacttgttccccactgttgctctggcgcgcagtgatgatcaagatctttcagcaaaggtaaagtcgaagctcaatttcactttctggaacctgatggaacccttgttacttggggagatagcaaagacatgggatgtatgtgcccgagtggtgatctttgaatatgcagagcagaatggaggaggaagcttcacttctaagtatgacacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

145

Amino Acids

15.64

Weight (kDa)

5.64

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001760)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12010 FvH4_7g04352
malus_domestica	MD02G1272500.v1.1 MD02G1272700.v1.1 MD02G1272800.v1.1 MD03G1032600.v1.1 MD07G1041400.v1.1
prunus_persica	Prupe.2G048200_v2.0.a1 Prupe.2G048200_v2.0.a1 Prupe.6G027400_v2.0.a1 Prupe.6G027400_v2.0.a1 Prupe.6G027400_v2.0.a1 Prupe.6G027400_v2.0.a1
pyrus_communis	pycom02g23330 pycom02g23360 pycom03g02610 pycom07g02890 pycom07g02900
rosa_chinensis	RchiOBHm_Chr4g0390581 RchiOBHm_Chr4g0409611
rosa_laevigata	RLG00000008544 RLG00000008548 RLG00000029895
rosa_multiflora	Rmu_co8074362.1_g000001 Rmu_sc0000652.1_g000023 Rmu_sc0001380.1_g000009 Rmu_sc0008771.1_g000002 Rmu_sc0028975.1_g000001 Rmu_sc0041275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321130 Rroxscaffold_5G00354140
rosa_rugosa	Rorug01G0079300.1 Rorug04G0095100 Rorug04G0095400
rosa_samantha	Rh1AG097800 Rh1AG097900 Rh1BG077900 Rh1DG058200 Rh1DG101100 Rh1DG101200 Rh4AG157100 Rh4BG156200 Rh4BG156500 Rh4CG036300 Rh4CG167000 Rh4DG150300 Rh4DG150700
rosa_wichuraiana	Rw4G012950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	253
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	74, 116
AgsI	TTSAA	4 cut(s)	57, 159, 221, 386
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	5 cut(s)	63, 101, 179, 295, 414
AluI	AGCT	5 cut(s)	63, 101, 179, 295, 414
Alw21I	GWGCWC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	78
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	1 cut(s)	82
AspLEI	GCGC	2 cut(s)	253, 255
AsuHPI	GGTGA	2 cut(s)	57, 388
AvaI	CYCGRG	1 cut(s)	369
BaeGI	GKGCMC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BccI	CCATC	2 cut(s)	215, 313
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	1 cut(s)	436
BglII	AGATCT	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	93, 314, 324
BmrFI	CCNGG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	97
Bsa29I	ATCGAT	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 116
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	74, 116
BseMII	CTCAG	1 cut(s)	117
BsePI	GCGCGC	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	420
BseSI	GKGCMC	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	253
BshVI	ATCGAT	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	74, 116
BsmI	GAATGC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	2 cut(s)	181, 370
Bsp143I	GATC	4 cut(s)	211, 262, 268, 378
BspCNI	CTCAG	1 cut(s)	118
BspDI	ATCGAT	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	93, 314, 324
BspPI	GGATC	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	116
BssHII	GCGCGC	1 cut(s)	251
BssMI	GATC	4 cut(s)	211, 262, 268, 378
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	3 cut(s)	97, 126, 423
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	253, 255
BstKTI	GATC	4 cut(s)	214, 265, 271, 381
BstMBI	GATC	4 cut(s)	211, 262, 268, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 185
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
Bsu15I	ATCGAT	1 cut(s)	210
BsuTUI	ATCGAT	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	237, 262
Cac8I	GCNNGC	1 cut(s)	253
CfoI	GCGC	2 cut(s)	253, 255
ClaI	ATCGAT	1 cut(s)	210
CviAII	CATG	1 cut(s)	354
CviJI	RGCY	7 cut(s)	63, 92, 101, 179, 206, 295, 414
CviKI_1	RGCY	7 cut(s)	63, 92, 101, 179, 206, 295, 414
DdeI	CTNAG	3 cut(s)	97, 126, 423
DpnI	GATC	4 cut(s)	213, 264, 270, 380
DpnII	GATC	4 cut(s)	211, 262, 268, 378
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	1 cut(s)	357
FaiI	YATR	7 cut(s)	113, 137, 192, 355, 364, 390, 429
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FatI	CATG	1 cut(s)	353
FbaI	TGATCA	1 cut(s)	262
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	436
GlaI	GCGC	2 cut(s)	252, 254
HhaI	GCGC	2 cut(s)	253, 255
Hin1II	CATG	1 cut(s)	357
Hin6I	GCGC	2 cut(s)	251, 253
HinP1I	GCGC	2 cut(s)	251, 253
HindIII	AAGCTT	1 cut(s)	412
HinfI	GANTC	2 cut(s)	16, 122
HphI	GGTGA	2 cut(s)	57, 388
Hpy188I	TCNGA	2 cut(s)	127, 142
Hpy188III	TCNNGA	4 cut(s)	57, 200, 266, 310
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	164, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 185
HpyF3I	CTNAG	3 cut(s)	97, 126, 423
Hsp92II	CATG	1 cut(s)	357
HspAI	GCGC	2 cut(s)	251, 253
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	211, 262, 268, 378
LmnI	GCTCC	2 cut(s)	97, 176
LpnPI	CCDG	8 cut(s)	60, 60, 102, 129, 213, 233, 295, 329
MaeI	CTAG	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	4 cut(s)	213, 264, 270, 380
MboI	GATC	4 cut(s)	211, 262, 268, 378
MboII	GAAGA	3 cut(s)	11, 25, 75
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	181, 370
MluCI	AATT	2 cut(s)	78, 298
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	398, 401
MroXI	GAANNNNTTC	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	98, 185
NdeII	GATC	4 cut(s)	211, 262, 268, 378
NlaIII	CATG	1 cut(s)	357
NlaIV	GGNNCC	3 cut(s)	93, 314, 324
PauI	GCGCGC	1 cut(s)	251
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	16, 122
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	93, 314, 324
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PsuI	RGATCY	1 cut(s)	268
PteI	GCGCGC	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	181
Sau3AI	GATC	4 cut(s)	211, 262, 268, 378
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	181, 370
Sse9I	AATT	2 cut(s)	78, 298
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	436
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	210, 290
TasI	AATT	2 cut(s)	78, 298
TfiI	GAWTC	2 cut(s)	16, 122
TscAI	CASTG	2 cut(s)	244, 262
TspRI	CASTG	2 cut(s)	244, 262
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	82
XspI	CTAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.